pycom09g10820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0014088
Physical Location & Seq
Forward (+)
8895685 .. 8897303
1619 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g10820.2

Sequence Viewer

Length: 915 bp
ATGGCCATGGAAATCGTAGTCGGAGACCGTACATCAGTTATACTAGAGAAGGGTCAGAAGGCTGTGTTTGGACGAGGAAATGCGTACACCACCGACGACCGAACGGTGTCTCGCCGTCACGTCTCTTTCGTTTCTGAGAATAACCAGACAAAGCCCTGCGTTTCGTTTGAGGTTCTGGGAAAGAATCCCATATGGATCCGGAGCGAAAAAGATGGAGAAGTTAGGGTTTTCAGGAGGTCGGAGAAGGGTGAGGTGGCGGCCGGTGATTGGTTCTGTGTGTCTGGGAAGAAACCCGTTTGGTTTAGAGTGGGAAAGGTTGGGGTAGATGAGAGAGAGAATAGGGTTTTGGAGAGTGAGCTTGAGTTGGCTGAGGGTTCGGGAAGTGGGTCTGAATTGGAGAGTCTCGATGTTTCCGGCATTGACCCTGTTAAAGAGTTTGGTTTTGTTGTAATGGGGCACGAGTTTGATCACTATCCAAAGCAAATGATCCGTGATGTAAAGAAGTGGAACTGGTTCCTCGAGGAACCTGGAAAAGAAGGTGACGATGATGATGGATTTGAGAGGACGGAGAGGAGGGGTGCGCGGAGAAAGAGGGGAAAAGACAAAGAAAATGAGGATGACGAGTGGACAGGGGAGAGTGAAACCGATGAAGAGGCTGTTGCAAAACTAAGAAAGGTAAATACACCAAAATATTCTACAAGATCAAAGGCGTGTAGCAAACCTCAGAAGGATGCAAAGAGGGGTAAATGTTCTGCGCACAAGAAGACTCCGGGTGCGGATGAAGAGGGAATGGAAGATGAAGATGATGAAACGCTCGGAGGCTTCATTGTTGGTGAGGAGGACATGGAAGAAGACGAGCTAGAGGAAACAGAAGACGAGGAGGAATTTGTCGAAGATGATGATGAAGAAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

305

Amino Acids

34.54

Weight (kDa)

4.64

Isoelectric Point (pI)

44.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13780
fragaria_vesca FvH4_6g33680
malus_domestica MD09G1191700.v1.1
prunus_persica Prupe.3G047900_v2.0.a1
pyrus_communis pycom09g10820
rosa_chinensis RchiOBHm_Chr2g0143591
rosa_laevigata RLG00000020049
rosa_multiflora Rmu_sc0002412.1_g000003 Rmu_sc0002412.1_g000004 Rmu_sc0005308.1_g000005
rosa_roxburghii Rroxscaffold_2G00101630
rosa_rugosa Rorug02G0384000
rosa_samantha Rh2AG436000 Rh2BG443600 Rh2CG422100 Rh2DG454000
rosa_wichuraiana Rw2G035530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 518
Acc16I TGCGCA 1 cut(s) 756
AccII CGCG 1 cut(s) 583
AccIII TCCGGA 1 cut(s) 198
AciI CCGC 3 cut(s) 257, 583, 776
AclWI GGATC 3 cut(s) 190, 203, 481
AcoI YGGCCR 2 cut(s) 3, 258
AcsI RAATTY 1 cut(s) 884
AfaI GTAC 2 cut(s) 31, 86
AfiI CCNNNNNNNGG 1 cut(s) 267
AjiI CACGTC 1 cut(s) 121
AjnI CCWGG 1 cut(s) 526
AjuI GAANNNNNNNTTGG 2 cut(s) 329, 361
AluBI AGCT 2 cut(s) 358, 859
AluI AGCT 2 cut(s) 358, 859
Alw26I GTCTC 4 cut(s) 18, 114, 127, 407
AlwI GGATC 3 cut(s) 190, 203, 481
Ama87I CYCGRG 1 cut(s) 518
Aor13HI TCCGGA 1 cut(s) 198
AoxI GGCC 2 cut(s) 3, 258
ApoI RAATTY 1 cut(s) 884
Asp700I GAANNNNTTC 1 cut(s) 512
AspLEI GCGC 2 cut(s) 583, 757
AsuC2I CCSGG 1 cut(s) 771
AsuHPI GGTGA 4 cut(s) 260, 275, 551, 845
AvaI CYCGRG 1 cut(s) 518
BaeGI GKGCMC 1 cut(s) 459
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 195
BauI CACGAG 1 cut(s) 458
BbsI GAAGAC 3 cut(s) 770, 858, 879
BbvCI CCTCAGC 1 cut(s) 369
BccI CCATC 2 cut(s) 206, 545
BceAI ACGGC 1 cut(s) 99
BciT130I CCWGG 1 cut(s) 528
BclI TGATCA 1 cut(s) 466
BcnI CCSGG 1 cut(s) 771
BcoDI GTCTC 4 cut(s) 18, 114, 127, 407
BfaI CTAG 2 cut(s) 44, 860
BisI GCNGC 1 cut(s) 258
BlsI GCNGC 1 cut(s) 259
Bme1390I CCNGG 2 cut(s) 528, 771
BmeT110I CYCGRG 1 cut(s) 518
BmgBI CACGTC 1 cut(s) 121
BmiI GGNNCC 3 cut(s) 197, 515, 525
BmrFI CCNGG 2 cut(s) 528, 771
BmsI GCATC 1 cut(s) 721
BpiI GAAGAC 3 cut(s) 770, 858, 879
Bpu10I CCTNAGC 1 cut(s) 369
BpuEI CTTGAG 1 cut(s) 380
BpuMI CCSGG 1 cut(s) 771
BsaBI GATNNNNATC 1 cut(s) 471
BsaI GGTCTC 1 cut(s) 18
BsaJI CCNNGG 1 cut(s) 6
BsaWI WCCGGW 1 cut(s) 198
Bsc4I CCNNNNNNNGG 1 cut(s) 267
Bse118I RCCGGY 1 cut(s) 260
Bse1I ACTGG 1 cut(s) 515
Bse8I GATNNNNATC 1 cut(s) 471
BseAI TCCGGA 1 cut(s) 198
BseBI CCWGG 1 cut(s) 528
BseDI CCNNGG 1 cut(s) 6
BseGI GGATG 3 cut(s) 622, 736, 784
BseJI GATNNNNATC 1 cut(s) 471
BseLI CCNNNNNNNGG 1 cut(s) 267
BseMII CTCAG 3 cut(s) 126, 360, 737
BseNI ACTGG 1 cut(s) 515
BseRI GAGGAG 3 cut(s) 586, 851, 893
BseSI GKGCMC 1 cut(s) 459
BseX3I CGGCCG 1 cut(s) 258
Bsh1236I CGCG 1 cut(s) 583
Bsh1285I CGRYCG 2 cut(s) 100, 261
BshFI GGCC 2 cut(s) 5, 260
BsiEI CGRYCG 2 cut(s) 100, 261
BsiHKCI CYCGRG 1 cut(s) 518
BsiSI CCGG 4 cut(s) 199, 261, 414, 770
BslI CCNNNNNNNGG 1 cut(s) 267
BsmAI GTCTC 4 cut(s) 18, 114, 127, 407
BsmBI CGTCTC 1 cut(s) 127
BsnI GGCC 2 cut(s) 5, 260
Bso31I GGTCTC 1 cut(s) 18
BsoBI CYCGRG 1 cut(s) 518
Bsp1286I GDGCHC 1 cut(s) 459
Bsp13I TCCGGA 1 cut(s) 198
Bsp143I GATC 4 cut(s) 195, 466, 486, 701
Bsp19I CCATGG 1 cut(s) 6
BspACI CCGC 3 cut(s) 257, 583, 776
BspANI GGCC 2 cut(s) 5, 260
BspCNI CTCAG 3 cut(s) 127, 361, 736
BspEI TCCGGA 1 cut(s) 198
BspFNI CGCG 1 cut(s) 583
BspLI GGNNCC 3 cut(s) 197, 515, 525
BspPI GGATC 3 cut(s) 190, 203, 481
BspTNI GGTCTC 1 cut(s) 18
BsrFI RCCGGY 1 cut(s) 260
BsrI ACTGG 1 cut(s) 515
BssAI RCCGGY 1 cut(s) 260
BssECI CCNNGG 1 cut(s) 6
BssMI GATC 4 cut(s) 195, 466, 486, 701
BssSI CACGAG 1 cut(s) 458
BssT1I CCWWGG 1 cut(s) 6
Bst2BI CACGAG 1 cut(s) 458
Bst2UI CCWGG 1 cut(s) 528
Bst4CI ACNGT 2 cut(s) 29, 106
Bst6I CTCTTC 3 cut(s) 645, 777, 903
BstDEI CTNAG 4 cut(s) 135, 369, 668, 723
BstDSI CCRYGG 1 cut(s) 6
BstF5I GGATG 3 cut(s) 622, 736, 784
BstFNI CGCG 1 cut(s) 583
BstHHI GCGC 2 cut(s) 583, 757
BstKTI GATC 4 cut(s) 198, 469, 489, 704
BstMAI GTCTC 4 cut(s) 18, 114, 127, 407
BstMBI GATC 4 cut(s) 195, 466, 486, 701
BstMCI CGRYCG 2 cut(s) 100, 261
BstNI CCWGG 1 cut(s) 528
BstSCI CCNGG 2 cut(s) 526, 769
BstSLI GKGCMC 1 cut(s) 459
BstUI CGCG 1 cut(s) 583
BstV2I GAAGAC 3 cut(s) 770, 858, 879
BstX2I RGATCY 1 cut(s) 195
BstYI RGATCY 1 cut(s) 195
BstZI CGGCCG 1 cut(s) 258
BsuRI GGCC 2 cut(s) 5, 260
BtgI CCRYGG 1 cut(s) 6
BtrI CACGTC 1 cut(s) 121
BtsCI GGATG 3 cut(s) 622, 736, 784
CfoI GCGC 2 cut(s) 583, 757
Cfr10I RCCGGY 1 cut(s) 260
Csp6I GTAC 2 cut(s) 30, 85
CviAII CATG 2 cut(s) 7, 844
CviJI RGCY 9 cut(s) 5, 62, 154, 260, 358, 368, 656, 822, 859
CviKI_1 RGCY 9 cut(s) 5, 62, 154, 260, 358, 368, 656, 822, 859
CviQI GTAC 2 cut(s) 30, 85
DdeI CTNAG 4 cut(s) 135, 369, 668, 723
DpnI GATC 4 cut(s) 197, 468, 488, 703
DpnII GATC 4 cut(s) 195, 466, 486, 701
EaeI YGGCCR 2 cut(s) 3, 258
EagI CGGCCG 1 cut(s) 258
Eam1104I CTCTTC 3 cut(s) 645, 777, 903
EarI CTCTTC 3 cut(s) 645, 777, 903
EclXI CGGCCG 1 cut(s) 258
Eco130I CCWWGG 1 cut(s) 6
Eco31I GGTCTC 1 cut(s) 18
Eco52I CGGCCG 1 cut(s) 258
Eco88I CYCGRG 1 cut(s) 518
EcoRII CCWGG 1 cut(s) 526
EcoT14I CCWWGG 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 127
FaeI CATG 2 cut(s) 10, 847
FaiI YATR 5 cut(s) 8, 41, 191, 193, 845
FatI CATG 2 cut(s) 6, 843
FauNDI CATATG 1 cut(s) 191
FbaI TGATCA 1 cut(s) 466
Fnu4HI GCNGC 1 cut(s) 258
FokI GGATG 3 cut(s) 629, 743, 791
Fsp4HI GCNGC 1 cut(s) 258
FspBI CTAG 2 cut(s) 44, 860
FspI TGCGCA 1 cut(s) 756
GlaI GCGC 2 cut(s) 582, 756
GluI GCNGC 1 cut(s) 258
HaeIII GGCC 2 cut(s) 5, 260
HapII CCGG 4 cut(s) 199, 261, 414, 770
HhaI GCGC 2 cut(s) 583, 757
Hin1II CATG 2 cut(s) 10, 847
Hin6I GCGC 2 cut(s) 581, 755
HinP1I GCGC 2 cut(s) 581, 755
HinfI GANTC 3 cut(s) 184, 400, 766
HpaII CCGG 4 cut(s) 199, 261, 414, 770
HphI GGTGA 4 cut(s) 260, 275, 551, 845
Hpy166II GTNNAC 2 cut(s) 87, 627
Hpy188I TCNGA 7 cut(s) 23, 57, 136, 241, 391, 726, 818
Hpy188III TCNNGA 4 cut(s) 199, 232, 378, 404
Hpy8I GTNNAC 2 cut(s) 87, 627
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 5 cut(s) 43, 52, 238, 530, 721
HpyCH4III ACNGT 2 cut(s) 29, 106
HpyCH4IV ACGT 1 cut(s) 120
HpyCH4V TGCA 2 cut(s) 662, 734
HpyF3I CTNAG 4 cut(s) 135, 369, 668, 723
HpySE526I ACGT 1 cut(s) 120
Hsp92II CATG 2 cut(s) 10, 847
HspAI GCGC 2 cut(s) 581, 755
Kpn2I TCCGGA 1 cut(s) 198
Ksp22I TGATCA 1 cut(s) 466
Kzo9I GATC 4 cut(s) 195, 466, 486, 701
LmnI GCTCC 1 cut(s) 201
LweI GCATC 1 cut(s) 721
MaeI CTAG 2 cut(s) 44, 860
MaeII ACGT 1 cut(s) 120
MaeIII GTNAC 2 cut(s) 116, 539
MalI GATC 4 cut(s) 197, 468, 488, 703
MboI GATC 4 cut(s) 195, 466, 486, 701
MflI RGATCY 1 cut(s) 195
MhlI GDGCHC 1 cut(s) 459
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 392, 884
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 409, 760
MmeI TCCRAC 1 cut(s) 219
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 198
MroXI GAANNNNTTC 1 cut(s) 512
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 429
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 4 cut(s) 199, 261, 414, 770
MspR9I CCNGG 2 cut(s) 528, 771
MvaI CCWGG 1 cut(s) 528
MvnI CGCG 1 cut(s) 583
NciI CCSGG 1 cut(s) 771
NcoI CCATGG 1 cut(s) 6
NdeI CATATG 1 cut(s) 191
NdeII GATC 4 cut(s) 195, 466, 486, 701
NlaIII CATG 2 cut(s) 10, 847
NlaIV GGNNCC 3 cut(s) 197, 515, 525
NmuCI GTSAC 2 cut(s) 116, 539
NsbI TGCGCA 1 cut(s) 756
PaeR7I CTCGAG 1 cut(s) 518
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PdmI GAANNNNTTC 1 cut(s) 512
PfeI GAWTC 1 cut(s) 184
PkrI GCNGC 1 cut(s) 259
PleI GAGTC 2 cut(s) 408, 760
PpsI GAGTC 2 cut(s) 408, 760
Psp6I CCWGG 1 cut(s) 526
PspGI CCWGG 1 cut(s) 526
PspN4I GGNNCC 3 cut(s) 197, 515, 525
PspXI VCTCGAGB 1 cut(s) 518
PsuI RGATCY 1 cut(s) 195
RsaI GTAC 2 cut(s) 31, 86
RsaNI GTAC 2 cut(s) 30, 85
SaqAI TTAA 1 cut(s) 429
SatI GCNGC 1 cut(s) 258
Sau3AI GATC 4 cut(s) 195, 466, 486, 701
SchI GAGTC 2 cut(s) 409, 760
ScrFI CCNGG 2 cut(s) 528, 771
SduI GDGCHC 1 cut(s) 459
SfaNI GCATC 1 cut(s) 721
Sfr274I CTCGAG 1 cut(s) 518
SlaI CTCGAG 1 cut(s) 518
SmlI CTYRAG 2 cut(s) 359, 518
SmoI CTYRAG 2 cut(s) 359, 518
Sse9I AATT 2 cut(s) 392, 884
SsiI CCGC 3 cut(s) 257, 583, 776
SspI AATATT 1 cut(s) 692
SspMI CTAG 2 cut(s) 44, 860
StyD4I CCNGG 2 cut(s) 526, 769
StyI CCWWGG 1 cut(s) 6
TaaI ACNGT 2 cut(s) 29, 106
TaiI ACGT 1 cut(s) 123
TaqI TCGA 3 cut(s) 405, 519, 891
TaqII GACCGA 1 cut(s) 114
TasI AATT 2 cut(s) 392, 884
TauI GCSGC 1 cut(s) 260
TfiI GAWTC 1 cut(s) 184
Tru1I TTAA 1 cut(s) 429
Tru9I TTAA 1 cut(s) 429
TseFI GTSAC 2 cut(s) 116, 539
Tsp45I GTSAC 2 cut(s) 116, 539
TspDTI ATGAA 5 cut(s) 663, 795, 813, 814, 822
TspGWI ACGGA 2 cut(s) 479, 581
XapI RAATTY 1 cut(s) 884
XhoI CTCGAG 1 cut(s) 518
XmnI GAANNNNTTC 1 cut(s) 512
XspI CTAG 2 cut(s) 44, 860
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.