Prupe.3G047900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0014088
Physical Location & Seq
Forward (+)
3389116 .. 3390696
1581 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G047900.1

Sequence Viewer

Length: 969 bp
ATGGAAATTGAAGTGGAAGACCATTCGAAATTCATACTAGAGAAGGGTCATAAGGCTGTGTTTGGAAGAGGAAATGGGTGCAGCACCAACGACCGTACAGTGTCTCGTCGTCACGTTTTGTTCGAATTTGAACACAAAAGCGCGAACCAAACAGAACCCAGCGTTTCATTTGAGGTTCTAGGGAAGAATCCCATATGGGTCCGGAGCCAAAAGGATGGGGGAGTTAGGGTTTTCAGGAGGTCGGAGAAGGGTGAGGTGGCGGCCGGTGATTGGTTCTGCGTGTCTGGGAAGAGACCCGTTTGGTTCAGAGTGAGAAATGTTGAGGTGGAAGAGAGAGAGAAAAGGGTTTTGGAGAGTGAGAGTGAGTTGGCTGAGGATTTGCAAAGTGGGTCTGAATTGGAAGGTCTTGATGTCTCAGGCATTGACCCTGTCAAAGAATTACCAGTTATGCTTGTGATGATAATGTCACACTCTTTCTGGAATGCAGAGTTTGGTTTTGTTGTAATGGGGCATGAGTTTGATCCCTATCCCAAACAAATGATCCGTGATGTAAAGAAGTGGAACTGGTTTCTTGAGGAACCTAGAAAAGAAAGCGAAAATGATGACGAATTTGAGCAGAAGGAGAGGGAGGGTGCGCCGAGAAAGAGGAAAAAAGGCGAAGAAAATGAGGATGAGGAGTGGACAGGGGAGAGTGAAGCTGATGAGGAGCTTGTTGCAAAGTTTAGAAAGGTAAATAAGACAAAATATTCTACAAGATCGAAGGCCAGTTTCAAACCTCAGAAGGATACAAAATGTGGTAGTAAAAGCTCTGCGCAGAAGAAGAAGACTACTAGTTTGGGTGAAGAAGATGAAACACTTGGAGGCTTCATTGTTGGTGAGGAGGACTTGGAAGAAGAAGAACTAGAAGAAACCGATGAAGACGACGAAGAAGAGGAATTTGTTGAAGAAGATGATGATGAAGAAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

323

Amino Acids

37.26

Weight (kDa)

4.68

Isoelectric Point (pI)

59.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13780
fragaria_vesca FvH4_6g33680
malus_domestica MD09G1191700.v1.1
prunus_persica Prupe.3G047900_v2.0.a1
pyrus_communis pycom09g10820
rosa_chinensis RchiOBHm_Chr2g0143591
rosa_laevigata RLG00000020049
rosa_multiflora Rmu_sc0002412.1_g000003 Rmu_sc0002412.1_g000004 Rmu_sc0005308.1_g000005
rosa_roxburghii Rroxscaffold_2G00101630
rosa_rugosa Rorug02G0384000
rosa_samantha Rh2AG436000 Rh2BG443600 Rh2CG422100 Rh2DG454000
rosa_wichuraiana Rw2G035530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 813
AccII CGCG 1 cut(s) 143
AccIII TCCGGA 1 cut(s) 201
AciI CCGC 1 cut(s) 260
AclWI GGATC 2 cut(s) 515, 535
AcoI YGGCCR 1 cut(s) 261
AcsI RAATTY 4 cut(s) 29, 125, 608, 935
AfaI GTAC 1 cut(s) 97
AfiI CCNNNNNNNGG 1 cut(s) 270
AgsI TTSAA 4 cut(s) 11, 131, 772, 944
AhlI ACTAGT 1 cut(s) 830
AjuI GAANNNNNNNTTGG 2 cut(s) 332, 364
AluBI AGCT 3 cut(s) 698, 709, 807
AluI AGCT 3 cut(s) 698, 709, 807
Alw26I GTCTC 3 cut(s) 108, 286, 418
AlwI GGATC 2 cut(s) 515, 535
Aor13HI TCCGGA 1 cut(s) 201
AoxI GGCC 2 cut(s) 261, 762
ApeKI GCWGC 1 cut(s) 81
ApoI RAATTY 4 cut(s) 29, 125, 608, 935
ArsI GACNNNNNNTTYG 2 cut(s) 817, 849
AspLEI GCGC 3 cut(s) 143, 637, 814
AspS9I GGNCC 1 cut(s) 199
AsuHPI GGTGA 4 cut(s) 263, 278, 851, 887
AsuII TTCGAA 2 cut(s) 26, 123
AvaII GGWCC 1 cut(s) 199
BbsI GAAGAC 3 cut(s) 24, 830, 924
BbvCI CCTCAGC 1 cut(s) 372
BbvI GCAGC 1 cut(s) 93
BccI CCATC 1 cut(s) 209
BciVI GTATCC 1 cut(s) 778
BcoDI GTCTC 3 cut(s) 108, 286, 418
BcuI ACTAGT 1 cut(s) 830
BfaI CTAG 5 cut(s) 38, 179, 582, 831, 902
BfuI GTATCC 1 cut(s) 778
BisI GCNGC 2 cut(s) 82, 261
BlsI GCNGC 2 cut(s) 83, 262
Bme18I GGWCC 1 cut(s) 199
BmgT120I GGNCC 1 cut(s) 199
BmiI GGNNCC 3 cut(s) 200, 206, 579
BpiI GAAGAC 3 cut(s) 24, 830, 924
Bpu10I CCTNAGC 1 cut(s) 372
Bpu14I TTCGAA 2 cut(s) 26, 123
BpuEI CTTGAG 1 cut(s) 593
BsaBI GATNNNNATC 1 cut(s) 525
BsaI GGTCTC 1 cut(s) 286
BsaWI WCCGGW 1 cut(s) 201
BsaXI ACNNNNNCTCC 2 cut(s) 213, 243
Bsc4I CCNNNNNNNGG 1 cut(s) 270
Bse118I RCCGGY 1 cut(s) 263
Bse1I ACTGG 3 cut(s) 443, 569, 765
Bse8I GATNNNNATC 1 cut(s) 525
BseAI TCCGGA 1 cut(s) 201
BseGI GGATG 2 cut(s) 220, 676
BseJI GATNNNNATC 1 cut(s) 525
BseLI CCNNNNNNNGG 1 cut(s) 270
BseMII CTCAG 3 cut(s) 363, 429, 791
BseNI ACTGG 3 cut(s) 443, 569, 765
BseRI GAGGAG 3 cut(s) 689, 719, 893
BseX3I CGGCCG 1 cut(s) 261
BseXI GCAGC 1 cut(s) 93
BseYI CCCAGC 1 cut(s) 158
BsgI GTGCAG 1 cut(s) 100
Bsh1236I CGCG 1 cut(s) 143
Bsh1285I CGRYCG 2 cut(s) 94, 264
BshFI GGCC 2 cut(s) 263, 764
BsiEI CGRYCG 2 cut(s) 94, 264
BsiSI CCGG 2 cut(s) 202, 264
BslI CCNNNNNNNGG 1 cut(s) 270
BsmAI GTCTC 3 cut(s) 108, 286, 418
BsmI GAATGC 1 cut(s) 487
BsnI GGCC 2 cut(s) 263, 764
Bso31I GGTCTC 1 cut(s) 286
Bsp119I TTCGAA 2 cut(s) 26, 123
Bsp13I TCCGGA 1 cut(s) 201
Bsp143I GATC 3 cut(s) 520, 540, 755
BspACI CCGC 1 cut(s) 260
BspANI GGCC 2 cut(s) 263, 764
BspCNI CTCAG 3 cut(s) 364, 428, 790
BspEI TCCGGA 1 cut(s) 201
BspFNI CGCG 1 cut(s) 143
BspLI GGNNCC 3 cut(s) 200, 206, 579
BspPI GGATC 2 cut(s) 515, 535
BspT104I TTCGAA 2 cut(s) 26, 123
BspTNI GGTCTC 1 cut(s) 286
BsrFI RCCGGY 1 cut(s) 263
BsrI ACTGG 3 cut(s) 443, 569, 765
BssAI RCCGGY 1 cut(s) 263
BssMI GATC 3 cut(s) 520, 540, 755
Bst4CI ACNGT 2 cut(s) 95, 100
Bst6I CTCTTC 5 cut(s) 61, 284, 324, 924, 957
BstBI TTCGAA 2 cut(s) 26, 123
BstDEI CTNAG 3 cut(s) 372, 415, 777
BstF5I GGATG 2 cut(s) 220, 676
BstFNI CGCG 1 cut(s) 143
BstHHI GCGC 3 cut(s) 143, 637, 814
BstKTI GATC 3 cut(s) 523, 543, 758
BstMAI GTCTC 3 cut(s) 108, 286, 418
BstMBI GATC 3 cut(s) 520, 540, 755
BstMCI CGRYCG 2 cut(s) 94, 264
BstUI CGCG 1 cut(s) 143
BstV1I GCAGC 1 cut(s) 93
BstV2I GAAGAC 3 cut(s) 24, 830, 924
BstXI CCANNNNNNTGG 1 cut(s) 215
BstZI CGGCCG 1 cut(s) 261
BsuI GTATCC 1 cut(s) 778
BsuRI GGCC 2 cut(s) 263, 764
BtsCI GGATG 2 cut(s) 220, 676
BtsIMutI CAGTG 1 cut(s) 105
CfoI GCGC 3 cut(s) 143, 637, 814
Cfr10I RCCGGY 1 cut(s) 263
Cfr13I GGNCC 1 cut(s) 199
Csp6I GTAC 1 cut(s) 96
CviAII CATG 1 cut(s) 512
CviJI RGCY 9 cut(s) 56, 207, 263, 371, 698, 709, 764, 807, 864
CviKI_1 RGCY 9 cut(s) 56, 207, 263, 371, 698, 709, 764, 807, 864
CviQI GTAC 1 cut(s) 96
DdeI CTNAG 3 cut(s) 372, 415, 777
DpnI GATC 3 cut(s) 522, 542, 757
DpnII GATC 3 cut(s) 520, 540, 755
EaeI YGGCCR 1 cut(s) 261
EagI CGGCCG 1 cut(s) 261
Eam1104I CTCTTC 5 cut(s) 61, 284, 324, 924, 957
EarI CTCTTC 5 cut(s) 61, 284, 324, 924, 957
EclXI CGGCCG 1 cut(s) 261
Eco31I GGTCTC 1 cut(s) 286
Eco47I GGWCC 1 cut(s) 199
Eco52I CGGCCG 1 cut(s) 261
FaeI CATG 1 cut(s) 515
FaiI YATR 6 cut(s) 35, 51, 194, 196, 449, 513
FatI CATG 1 cut(s) 511
FauNDI CATATG 1 cut(s) 194
Fnu4HI GCNGC 2 cut(s) 82, 261
FokI GGATG 2 cut(s) 227, 683
Fsp4HI GCNGC 2 cut(s) 82, 261
FspBI CTAG 5 cut(s) 38, 179, 582, 831, 902
FspI TGCGCA 1 cut(s) 813
GlaI GCGC 3 cut(s) 142, 636, 813
GluI GCNGC 2 cut(s) 82, 261
GsaI CCCAGC 1 cut(s) 162
HaeIII GGCC 2 cut(s) 263, 764
HapII CCGG 2 cut(s) 202, 264
HhaI GCGC 3 cut(s) 143, 637, 814
Hin1II CATG 1 cut(s) 515
Hin6I GCGC 3 cut(s) 141, 635, 812
HinP1I GCGC 3 cut(s) 141, 635, 812
HinfI GANTC 1 cut(s) 187
HpaII CCGG 2 cut(s) 202, 264
HphI GGTGA 4 cut(s) 263, 278, 851, 887
Hpy166II GTNNAC 1 cut(s) 681
Hpy188I TCNGA 4 cut(s) 244, 308, 394, 780
Hpy188III TCNNGA 5 cut(s) 202, 235, 407, 478, 572
Hpy8I GTNNAC 1 cut(s) 681
Hpy99I CGWCG 2 cut(s) 111, 926
HpyAV CCTTC 6 cut(s) 37, 241, 395, 613, 754, 775
HpyCH4III ACNGT 2 cut(s) 95, 100
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 4 cut(s) 81, 382, 485, 716
HpyF3I CTNAG 3 cut(s) 372, 415, 777
HpySE526I ACGT 1 cut(s) 114
Hsp92II CATG 1 cut(s) 515
HspAI GCGC 3 cut(s) 141, 635, 812
Kpn2I TCCGGA 1 cut(s) 201
Kzo9I GATC 3 cut(s) 520, 540, 755
LmnI GCTCC 2 cut(s) 204, 706
Lsp1109I GCAGC 1 cut(s) 93
MaeI CTAG 5 cut(s) 38, 179, 582, 831, 902
MaeII ACGT 1 cut(s) 114
MaeIII GTNAC 2 cut(s) 110, 465
MalI GATC 3 cut(s) 522, 542, 757
MboI GATC 3 cut(s) 520, 540, 755
MluCI AATT 7 cut(s) 6, 29, 125, 395, 437, 608, 935
MmeI TCCRAC 1 cut(s) 222
MroI TCCGGA 1 cut(s) 201
MspI CCGG 2 cut(s) 202, 264
Mva1269I GAATGC 1 cut(s) 487
MvnI CGCG 1 cut(s) 143
NdeI CATATG 1 cut(s) 194
NdeII GATC 3 cut(s) 520, 540, 755
NlaIII CATG 1 cut(s) 515
NlaIV GGNNCC 3 cut(s) 200, 206, 579
NmeAIII GCCGAG 1 cut(s) 663
NmuCI GTSAC 2 cut(s) 110, 465
NsbI TGCGCA 1 cut(s) 813
NspV TTCGAA 2 cut(s) 26, 123
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PctI GAATGC 1 cut(s) 487
PfeI GAWTC 1 cut(s) 187
PflFI GACNNNGTC 1 cut(s) 428
PkrI GCNGC 2 cut(s) 83, 262
PspFI CCCAGC 1 cut(s) 158
PspN4I GGNNCC 3 cut(s) 200, 206, 579
PspPI GGNCC 1 cut(s) 199
PsyI GACNNNGTC 1 cut(s) 428
RsaI GTAC 1 cut(s) 97
RsaNI GTAC 1 cut(s) 96
SatI GCNGC 2 cut(s) 82, 261
Sau3AI GATC 3 cut(s) 520, 540, 755
Sau96I GGNCC 1 cut(s) 199
SfuI TTCGAA 2 cut(s) 26, 123
SinI GGWCC 1 cut(s) 199
SmlI CTYRAG 1 cut(s) 572
SmoI CTYRAG 1 cut(s) 572
SpeI ACTAGT 1 cut(s) 830
Sse9I AATT 7 cut(s) 6, 29, 125, 395, 437, 608, 935
SsiI CCGC 1 cut(s) 260
SspI AATATT 1 cut(s) 746
SspMI CTAG 5 cut(s) 38, 179, 582, 831, 902
TaaI ACNGT 2 cut(s) 95, 100
TaiI ACGT 1 cut(s) 117
TaqI TCGA 3 cut(s) 26, 123, 758
TasI AATT 7 cut(s) 6, 29, 125, 395, 437, 608, 935
TauI GCSGC 1 cut(s) 263
TfiI GAWTC 1 cut(s) 187
TscAI CASTG 1 cut(s) 105
TseFI GTSAC 2 cut(s) 110, 465
TseI GCWGC 1 cut(s) 81
Tsp45I GTSAC 2 cut(s) 110, 465
TspDTI ATGAA 5 cut(s) 22, 156, 856, 864, 930
TspGWI ACGGA 1 cut(s) 533
TspRI CASTG 1 cut(s) 105
Tth111I GACNNNGTC 1 cut(s) 428
VpaK11BI GGWCC 1 cut(s) 199
XapI RAATTY 4 cut(s) 29, 125, 608, 935
XspI CTAG 5 cut(s) 38, 179, 582, 831, 902
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.