Rh2CG422100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0014088
Physical Location & Seq
Reverse (-)
57664859 .. 57666899
2041 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG422100.1

Sequence Viewer

Length: 945 bp
ATGGAAATCGAAGTTGAAGACCGCTCAAAACTTGTAGTGGAGAAAGGTCAAAAGGCCGTGTTTGGAAGAGGAAATGGGTTCAACACCACAGACCGAACAGTCTCTCGCCGTCATGTTTTGTTCGAACTCGAGCACAAAAACGCGACCCAAACAGAGCCCAGAATCTCATTCGAGGTTCTGGGGAGGAACCCCGTCTGGGTCCGGAGCCAGAAAGACGGGGAAGTCAGGGTTTTCAGAAGGTCGGAGAAGGGTGAGCTGGCGGCCGGTGATTGGCTCTGCGTGTCTGGGAAGAGACCCATTTGGTTTAAAGTGAGAAATGTTGGGGTTGAAGAGGAAGTTAAGAGGGTTTTGGAGAGTGAGAGTGAAATGGCTGAGGGTTTGCTAAATGGGTCTGAATGGGGAGGTGTTGATGTTTCCGGCATTGACCCTGTTAAAGAGTTTGGTTTCGTTGTAATGGGGAATGAGTTTGATCAGTATCACAAGCAAATGATTTGCGATGTAAAGAACTGGAACTGGTTTCTTGAGGAACCTAGAAAAGAAAGCGACGATGATGAATATGAGGGAAAGGAAAGGAGGGGTGGGAGGAGAAAGAGGAAAAAAGGTGAAGAAAACGATAATGAAGAGTGGACAGGGGATAGTGAAGCTGATGAAGAGCTTGTTGCAAAACTTAGAAAGGTAAATAAGCCAAAATATTCTACAAGATCGAAGGCCCATAGTGAACCTCAGAAGAAAGCAAAGGGTAGTAAACATTCTGATCAAAAGAAGACGGCTGTTGTGGATGAAGAGGGCATAAAAGACAACGATAAAGATGAAGATGATGAAACACTTGGAGGCTTCATTGTTGGCGAGGACGACTTGGAAGAAGAAGACCCTGAAGGAACTGATGAATATGAAGAAGAGGAGGAATTTGTTGAAGAAGATGATGATGATGATGATGATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

314

Amino Acids

36.17

Weight (kDa)

4.63

Isoelectric Point (pI)

51.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13780
fragaria_vesca FvH4_6g33680
malus_domestica MD09G1191700.v1.1
prunus_persica Prupe.3G047900_v2.0.a1
pyrus_communis pycom09g10820
rosa_chinensis RchiOBHm_Chr2g0143591
rosa_laevigata RLG00000020049
rosa_multiflora Rmu_sc0002412.1_g000003 Rmu_sc0002412.1_g000004 Rmu_sc0005308.1_g000005
rosa_roxburghii Rroxscaffold_2G00101630
rosa_rugosa Rorug02G0384000
rosa_samantha Rh2AG436000 Rh2BG443600 Rh2CG422100 Rh2DG454000
rosa_wichuraiana Rw2G035530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 98, 221
AccBSI CCGCTC 1 cut(s) 24
AccII CGCG 1 cut(s) 143
AccIII TCCGGA 1 cut(s) 201
AciI CCGC 2 cut(s) 22, 260
AcoI YGGCCR 1 cut(s) 261
AcsI RAATTY 1 cut(s) 905
AcuI CTGAAG 1 cut(s) 894
AfiI CCNNNNNNNGG 2 cut(s) 196, 270
AgsI TTSAA 4 cut(s) 17, 82, 329, 914
AluBI AGCT 3 cut(s) 256, 644, 655
AluI AGCT 3 cut(s) 256, 644, 655
Alw21I GWGCWC 1 cut(s) 135
Alw26I GTCTC 2 cut(s) 106, 286
Ama87I CYCGRG 1 cut(s) 128
Aor13HI TCCGGA 1 cut(s) 201
AoxI GGCC 3 cut(s) 54, 261, 708
ApoI RAATTY 1 cut(s) 905
AspS9I GGNCC 2 cut(s) 199, 709
AsuHPI GGTGA 3 cut(s) 263, 278, 614
AsuII TTCGAA 1 cut(s) 123
AvaI CYCGRG 1 cut(s) 128
AvaII GGWCC 1 cut(s) 199
BanII GRGCYC 1 cut(s) 159
BbsI GAAGAC 3 cut(s) 24, 770, 873
Bbv12I GWGCWC 1 cut(s) 135
BbvCI CCTCAGC 1 cut(s) 372
BceAI ACGGC 3 cut(s) 41, 93, 783
BclI TGATCA 2 cut(s) 469, 754
BcoDI GTCTC 2 cut(s) 106, 286
BfaI CTAG 1 cut(s) 531
BisI GCNGC 1 cut(s) 261
BlsI GCNGC 1 cut(s) 262
Bme18I GGWCC 1 cut(s) 199
BmeT110I CYCGRG 1 cut(s) 128
BmgT120I GGNCC 2 cut(s) 199, 709
BmiI GGNNCC 4 cut(s) 188, 200, 206, 528
BpiI GAAGAC 3 cut(s) 24, 770, 873
Bpu10I CCTNAGC 1 cut(s) 372
Bpu14I TTCGAA 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 542
BsaBI GATNNNNATC 1 cut(s) 474
BsaI GGTCTC 1 cut(s) 286
BsaWI WCCGGW 1 cut(s) 201
Bsc4I CCNNNNNNNGG 2 cut(s) 196, 270
Bse118I RCCGGY 1 cut(s) 263
Bse1I ACTGG 2 cut(s) 512, 518
Bse8I GATNNNNATC 1 cut(s) 474
BseAI TCCGGA 1 cut(s) 201
BseGI GGATG 1 cut(s) 784
BseJI GATNNNNATC 1 cut(s) 474
BseLI CCNNNNNNNGG 2 cut(s) 196, 270
BseMII CTCAG 2 cut(s) 363, 737
BseNI ACTGG 2 cut(s) 512, 518
BseRI GAGGAG 2 cut(s) 598, 914
BseX3I CGGCCG 1 cut(s) 261
Bsh1236I CGCG 1 cut(s) 143
Bsh1285I CGRYCG 1 cut(s) 264
BshFI GGCC 3 cut(s) 56, 263, 710
BsiEI CGRYCG 1 cut(s) 264
BsiHKAI GWGCWC 1 cut(s) 135
BsiHKCI CYCGRG 1 cut(s) 128
BsiSI CCGG 3 cut(s) 202, 264, 417
BslI CCNNNNNNNGG 2 cut(s) 196, 270
BsmAI GTCTC 2 cut(s) 106, 286
BsnI GGCC 3 cut(s) 56, 263, 710
Bso31I GGTCTC 1 cut(s) 286
BsoBI CYCGRG 1 cut(s) 128
Bsp119I TTCGAA 1 cut(s) 123
Bsp1286I GDGCHC 2 cut(s) 135, 159
Bsp13I TCCGGA 1 cut(s) 201
Bsp143I GATC 3 cut(s) 469, 701, 754
BspACI CCGC 2 cut(s) 22, 260
BspANI GGCC 3 cut(s) 56, 263, 710
BspCNI CTCAG 2 cut(s) 364, 736
BspEI TCCGGA 1 cut(s) 201
BspFNI CGCG 1 cut(s) 143
BspLI GGNNCC 4 cut(s) 188, 200, 206, 528
BspQI GCTCTTC 1 cut(s) 645
BspT104I TTCGAA 1 cut(s) 123
BspTNI GGTCTC 1 cut(s) 286
BsrBI CCGCTC 1 cut(s) 24
BsrFI RCCGGY 1 cut(s) 263
BsrI ACTGG 2 cut(s) 512, 518
BssAI RCCGGY 1 cut(s) 263
BssMI GATC 3 cut(s) 469, 701, 754
Bst4CI ACNGT 1 cut(s) 100
Bst6I CTCTTC 7 cut(s) 61, 284, 324, 615, 645, 777, 891
BstBI TTCGAA 1 cut(s) 123
BstC8I GCNNGC 1 cut(s) 258
BstDEI CTNAG 3 cut(s) 372, 668, 723
BstF5I GGATG 1 cut(s) 784
BstFNI CGCG 1 cut(s) 143
BstKTI GATC 3 cut(s) 472, 704, 757
BstMAI GTCTC 2 cut(s) 106, 286
BstMBI GATC 3 cut(s) 469, 701, 754
BstMCI CGRYCG 1 cut(s) 264
BstUI CGCG 1 cut(s) 143
BstV2I GAAGAC 3 cut(s) 24, 770, 873
BstZI CGGCCG 1 cut(s) 261
BsuRI GGCC 3 cut(s) 56, 263, 710
BtgZI GCGATG 1 cut(s) 510
BtsCI GGATG 1 cut(s) 784
Cac8I GCNNGC 1 cut(s) 258
Cfr10I RCCGGY 1 cut(s) 263
Cfr13I GGNCC 2 cut(s) 199, 709
CviAII CATG 1 cut(s) 113
DdeI CTNAG 3 cut(s) 372, 668, 723
DpnI GATC 3 cut(s) 471, 703, 756
DpnII GATC 3 cut(s) 469, 701, 754
DraI TTTAAA 1 cut(s) 307
DrdI GACNNNNNNGTC 2 cut(s) 98, 221
DseDI GACNNNNNNGTC 2 cut(s) 98, 221
EaeI YGGCCR 1 cut(s) 261
EagI CGGCCG 1 cut(s) 261
Eam1104I CTCTTC 7 cut(s) 61, 284, 324, 615, 645, 777, 891
EarI CTCTTC 7 cut(s) 61, 284, 324, 615, 645, 777, 891
EclXI CGGCCG 1 cut(s) 261
Eco24I GRGCYC 1 cut(s) 159
Eco31I GGTCTC 1 cut(s) 286
Eco47I GGWCC 1 cut(s) 199
Eco52I CGGCCG 1 cut(s) 261
Eco57I CTGAAG 1 cut(s) 894
Eco88I CYCGRG 1 cut(s) 128
EcoT38I GRGCYC 1 cut(s) 159
FaeI CATG 1 cut(s) 116
FaiI YATR 5 cut(s) 114, 558, 714, 791, 891
FatI CATG 1 cut(s) 112
FbaI TGATCA 2 cut(s) 469, 754
Fnu4HI GCNGC 1 cut(s) 261
FokI GGATG 1 cut(s) 791
FriOI GRGCYC 1 cut(s) 159
Fsp4HI GCNGC 1 cut(s) 261
FspBI CTAG 1 cut(s) 531
GluI GCNGC 1 cut(s) 261
HaeIII GGCC 3 cut(s) 56, 263, 710
HapII CCGG 3 cut(s) 202, 264, 417
Hin1II CATG 1 cut(s) 116
HinfI GANTC 1 cut(s) 162
HpaII CCGG 3 cut(s) 202, 264, 417
HphI GGTGA 3 cut(s) 263, 278, 614
Hpy166II GTNNAC 3 cut(s) 627, 719, 746
Hpy188I TCNGA 5 cut(s) 236, 244, 394, 726, 754
Hpy188III TCNNGA 2 cut(s) 202, 521
Hpy8I GTNNAC 3 cut(s) 627, 719, 746
Hpy99I CGWCG 1 cut(s) 548
HpyAV CCTTC 4 cut(s) 231, 241, 700, 869
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4V TGCA 1 cut(s) 662
HpyF3I CTNAG 3 cut(s) 372, 668, 723
Hsp92II CATG 1 cut(s) 116
Kpn2I TCCGGA 1 cut(s) 201
Ksp22I TGATCA 2 cut(s) 469, 754
Kzo9I GATC 3 cut(s) 469, 701, 754
LguI GCTCTTC 1 cut(s) 645
LmnI GCTCC 1 cut(s) 204
MaeI CTAG 1 cut(s) 531
MalI GATC 3 cut(s) 471, 703, 756
MbiI CCGCTC 1 cut(s) 24
MboI GATC 3 cut(s) 469, 701, 754
MhlI GDGCHC 2 cut(s) 135, 159
MluCI AATT 1 cut(s) 905
MmeI TCCRAC 1 cut(s) 222
MroI TCCGGA 1 cut(s) 201
MseI TTAA 3 cut(s) 306, 339, 432
MspI CCGG 3 cut(s) 202, 264, 417
MvnI CGCG 1 cut(s) 143
NdeII GATC 3 cut(s) 469, 701, 754
NlaIII CATG 1 cut(s) 116
NlaIV GGNNCC 4 cut(s) 188, 200, 206, 528
NspV TTCGAA 1 cut(s) 123
PaeR7I CTCGAG 1 cut(s) 128
PciSI GCTCTTC 1 cut(s) 645
PfeI GAWTC 1 cut(s) 162
PkrI GCNGC 1 cut(s) 262
PspN4I GGNNCC 4 cut(s) 188, 200, 206, 528
PspPI GGNCC 2 cut(s) 199, 709
PspXI VCTCGAGB 1 cut(s) 128
SapI GCTCTTC 1 cut(s) 645
SaqAI TTAA 3 cut(s) 306, 339, 432
SatI GCNGC 1 cut(s) 261
Sau3AI GATC 3 cut(s) 469, 701, 754
Sau96I GGNCC 2 cut(s) 199, 709
SduI GDGCHC 2 cut(s) 135, 159
Sfr274I CTCGAG 1 cut(s) 128
SfuI TTCGAA 1 cut(s) 123
SinI GGWCC 1 cut(s) 199
SlaI CTCGAG 1 cut(s) 128
SmlI CTYRAG 2 cut(s) 128, 521
SmoI CTYRAG 2 cut(s) 128, 521
Sse9I AATT 1 cut(s) 905
SsiI CCGC 2 cut(s) 22, 260
SspI AATATT 1 cut(s) 692
SspMI CTAG 1 cut(s) 531
TaaI ACNGT 1 cut(s) 100
TaqI TCGA 5 cut(s) 9, 123, 129, 171, 704
TaqII GACCGA 1 cut(s) 108
TasI AATT 1 cut(s) 905
TauI GCSGC 1 cut(s) 263
TfiI GAWTC 1 cut(s) 162
Tru1I TTAA 3 cut(s) 306, 339, 432
Tru9I TTAA 3 cut(s) 306, 339, 432
TspDTI ATGAA 9 cut(s) 567, 633, 663, 795, 825, 826, 834, 900, 906
VpaK11BI GGWCC 1 cut(s) 199
XapI RAATTY 1 cut(s) 905
XhoI CTCGAG 1 cut(s) 128
XspI CTAG 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.