AT3G15070

zinc finger (C3HC4-type RING finger) family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0007273
Physical Location & Seq
Reverse (-)
5070134 .. 5073440
3307 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G15070.1

Sequence Viewer

Length: 1461 bp
ATGCGACAAAGAAATATGATGACTGGTTCAGACATGGAGCAGAATTCTCAAAGCTTTGTTCCCCATCCTGAACCTCGCATTGGAACTAACTATCTGTATCCAGATATCCCACCAGTGAACACTGTTCCTCATTTAGAAGCTCATTCTCTGCAAGAACCTTATGATAACAACTCAATGTTCTACGGGCCTCCACAGTACCATCATCAACATGCTTCAAATCTTGGTTCTGGCATGTCAACCGCACCAAATTTCTATGTCCCTTATGTGAATTATGAAGCTCCACCGAGTTTTCTGTTGTCTCATGGAAGTAATGATGCAGTTGTTGGAGTTACTTCCACTGAACATGAGAGAAATGCCCATTTTATGGATCACGGATTCAAAAGAAAGAGTTCTGAAGTAATACCTGGAAATTCTCAGTATCCAGTTGCTCCTTGTTCTTTCCCTCAATTGAATACATCGGAGACAGCACCTTTTTCATTCCCACATTTTGGTACTTATCCACAACCACTAGATCAGAGAAGTGTGAGGAACAGAGCAGGAGCAGCTACAATGGATCCACTTCTCTCTCATGGTCATAACAACTTCAGTCAAGGAAACTATGCAGCTCATCCTTTTCCACCTCTTGGCTCAATCTGGTATGACCAACACTGTAATGGCAACAGATCTGATGGATCATCTTCGCTTTGGTCTCAAGCACCTGCCGTACCTTATATGCATGGTAACATTGCTACTGGATCTATAGAATCTGGTAATGTTTGCTTCCCAAGATACCATGAAACATCTAGTAGCAGAAACCCCACGCCATCTGTATACCAAAGGAACCACTATATTAGCCATCACCCCGTACCTCCTCCTCCCATCGTATACCCTCACATGCCTTCAGCCTCATACGCTGAGACTTTGCATCCTGCTTCATACAGTCATATGGGACAGGTTCAATCAACCGGATTCAGGATAAACCAATATCCCGGAGAAGATTTTGTACCTGCAGCAATTCTAAGACACCGTGAATTGCCTCACTTTAGAGCAATGCCCGCGAATGAAAATGCATTTTGGGAAGTAGGAGACTTCTACAATGCTGTTAATTATGTCGATCATCATCAAGACATGCGCTTAGACATAGAAGATATGTCATATGAGGAGCTTCTTGCTTTGAGCGACCAGATTGGAACTGTGAAGACAGGCTTGTCATCAGAAGATGTTAAAGAACTTCTGAAAAGAAGAACCTCGACCAGAATTAACCTGGAAGAAGGTCCATCTACTGATCTAGAGACTGATTCTTGCACGATATGCCAGGAAAACTACAAGAACGAAGATAAGATCGCAACGCTGGATTGCATGCACAAATACCATGCAGAATGCTTGAAGAAGTGGTTGGTTATCAAGAACGTTTGCCCAATCTGTAAATCAGAGGCATTGGTCATAGAGAAGAAGAAGAAGCTAAGGTTAAGTAGTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

486

Amino Acids

54.74

Weight (kDa)

6.17

Isoelectric Point (pI)

59.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 426 - 469 1.8e-13 Ring finger domain
zf-rbx1 PF12678 426 - 469 7.6e-09 RING-H2 zinc finger domain
zf-C3HC4 PF00097 428 - 468 4.1e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 428 - 468 9.6e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 428 - 455 9.8e-07 RING-like zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 706
AasI GACNNNNNNGTC 1 cut(s) 1186
Acc36I ACCTGC 2 cut(s) 706, 994
AccB7I CCANNNNNTGG 3 cut(s) 364, 488, 623
AccI GTMKAC 2 cut(s) 810, 864
AccII CGCG 1 cut(s) 1037
AciI CCGC 2 cut(s) 240, 1035
AclI AACGTT 1 cut(s) 1389
AclWI GGATC 5 cut(s) 375, 548, 561, 679, 742
AcsI RAATTY 3 cut(s) 43, 247, 409
AcuI CTGAAG 3 cut(s) 414, 568, 864
AfaI GTAC 5 cut(s) 197, 493, 705, 846, 984
AfiI CCNNNNNNNGG 5 cut(s) 80, 364, 488, 623, 951
AgsI TTSAA 5 cut(s) 216, 379, 451, 938, 1366
AjnI CCWGG 3 cut(s) 403, 1242, 1293
AjuI GAANNNNNNNTTGG 4 cut(s) 63, 95, 1358, 1390
AluBI AGCT 7 cut(s) 54, 140, 278, 545, 605, 1144, 1441
AluI AGCT 7 cut(s) 54, 140, 278, 545, 605, 1144, 1441
Alw26I GTCTC 6 cut(s) 303, 455, 693, 890, 1059, 1265
AlwI GGATC 5 cut(s) 375, 548, 561, 679, 742
AoxI GGCC 1 cut(s) 185
ApeKI GCWGC 3 cut(s) 542, 602, 989
ApoI RAATTY 3 cut(s) 43, 247, 409
Asp700I GAANNNNTTC 1 cut(s) 388
AspLEI GCGC 1 cut(s) 1113
AspS9I GGNCC 2 cut(s) 185, 1253
AsuC2I CCSGG 1 cut(s) 969
AsuHPI GGTGA 1 cut(s) 830
AvaII GGWCC 1 cut(s) 1253
BamHI GGATCC 1 cut(s) 553
BarI GAAGNNNNNNTAC 2 cut(s) 966, 998
BbsI GAAGAC 1 cut(s) 1184
BbvI GCAGC 3 cut(s) 554, 614, 1001
BccI CCATC 7 cut(s) 72, 207, 662, 811, 843, 866, 1264
BceAI ACGGC 1 cut(s) 686
BciT130I CCWGG 3 cut(s) 405, 1244, 1295
BciVI GTATCC 2 cut(s) 108, 429
BcnI CCSGG 1 cut(s) 969
BcoDI GTCTC 6 cut(s) 303, 455, 693, 890, 1059, 1265
BfaI CTAG 3 cut(s) 509, 783, 1268
BfmI CTRYAG 2 cut(s) 738, 987
BfuAI ACCTGC 2 cut(s) 706, 994
BfuI GTATCC 2 cut(s) 108, 429
BglII AGATCT 1 cut(s) 662
BisI GCNGC 3 cut(s) 543, 603, 990
BlsI GCNGC 3 cut(s) 544, 604, 991
Bme1390I CCNGG 4 cut(s) 405, 969, 1244, 1295
Bme18I GGWCC 1 cut(s) 1253
BmgT120I GGNCC 2 cut(s) 185, 1253
BmiI GGNNCC 2 cut(s) 555, 821
BmrFI CCNGG 4 cut(s) 405, 969, 1244, 1295
BmsI GCATC 2 cut(s) 304, 913
BpiI GAAGAC 1 cut(s) 1184
Bpu10I CCTNAGC 1 cut(s) 1442
BpuEI CTTGAG 1 cut(s) 675
BpuMI CCSGG 1 cut(s) 969
BsaBI GATNNNNATC 1 cut(s) 1098
BsaI GGTCTC 1 cut(s) 693
BsaWI WCCGGW 1 cut(s) 944
Bsc4I CCNNNNNNNGG 5 cut(s) 80, 364, 488, 623, 951
Bse1I ACTGG 4 cut(s) 28, 113, 422, 736
Bse3DI GCAATG 2 cut(s) 723, 1035
Bse8I GATNNNNATC 1 cut(s) 1098
BseBI CCWGG 3 cut(s) 405, 1244, 1295
BseGI GGATG 3 cut(s) 64, 607, 904
BseJI GATNNNNATC 1 cut(s) 1098
BseLI CCNNNNNNNGG 5 cut(s) 80, 364, 488, 623, 951
BseMI GCAATG 2 cut(s) 723, 1035
BseMII CTCAG 2 cut(s) 428, 885
BseNI ACTGG 4 cut(s) 28, 113, 422, 736
BseRI GAGGAG 3 cut(s) 840, 843, 1154
BseXI GCAGC 3 cut(s) 554, 614, 1001
Bsh1236I CGCG 1 cut(s) 1037
BshFI GGCC 1 cut(s) 187
BsiSI CCGG 2 cut(s) 945, 969
BslFI GGGAC 2 cut(s) 242, 942
BslI CCNNNNNNNGG 5 cut(s) 80, 364, 488, 623, 951
BsmAI GTCTC 6 cut(s) 303, 455, 693, 890, 1059, 1265
BsmFI GGGAC 2 cut(s) 242, 942
BsmI GAATGC 1 cut(s) 1364
BsnI GGCC 1 cut(s) 187
Bso31I GGTCTC 1 cut(s) 693
Bsp143I GATC 9 cut(s) 367, 511, 553, 662, 671, 734, 1093, 1264, 1320
BspACI CCGC 2 cut(s) 240, 1035
BspANI GGCC 1 cut(s) 187
BspCNI CTCAG 2 cut(s) 427, 886
BspFNI CGCG 1 cut(s) 1037
BspLI GGNNCC 2 cut(s) 555, 821
BspMAI CTGCAG 1 cut(s) 991
BspMI ACCTGC 2 cut(s) 706, 994
BspPI GGATC 5 cut(s) 375, 548, 561, 679, 742
BspTNI GGTCTC 1 cut(s) 693
BsrDI GCAATG 2 cut(s) 723, 1035
BsrI ACTGG 4 cut(s) 28, 113, 422, 736
BssMI GATC 9 cut(s) 367, 511, 553, 662, 671, 734, 1093, 1264, 1320
BssNAI GTATAC 2 cut(s) 811, 865
Bst1107I GTATAC 2 cut(s) 811, 865
Bst2UI CCWGG 3 cut(s) 405, 1244, 1295
Bst4CI ACNGT 6 cut(s) 124, 195, 650, 920, 1007, 1174
BstAPI GCANNNNNTGC 1 cut(s) 1290
BstC8I GCNNGC 2 cut(s) 1035, 1340
BstDEI CTNAG 5 cut(s) 414, 894, 998, 1114, 1442
BstF5I GGATG 3 cut(s) 64, 607, 904
BstFNI CGCG 1 cut(s) 1037
BstHHI GCGC 1 cut(s) 1113
BstKTI GATC 9 cut(s) 370, 514, 556, 665, 674, 737, 1096, 1267, 1323
BstMAI GTCTC 6 cut(s) 303, 455, 693, 890, 1059, 1265
BstMBI GATC 9 cut(s) 367, 511, 553, 662, 671, 734, 1093, 1264, 1320
BstMWI GCNNNNNNNGC 4 cut(s) 542, 890, 1034, 1290
BstNI CCWGG 3 cut(s) 405, 1244, 1295
BstNSI RCATGY 5 cut(s) 212, 235, 877, 1111, 1342
BstSCI CCNGG 4 cut(s) 403, 967, 1242, 1293
BstSFI CTRYAG 2 cut(s) 738, 987
BstUI CGCG 1 cut(s) 1037
BstV1I GCAGC 3 cut(s) 554, 614, 1001
BstV2I GAAGAC 1 cut(s) 1184
BstX2I RGATCY 3 cut(s) 553, 662, 734
BstYI RGATCY 3 cut(s) 553, 662, 734
BstZ17I GTATAC 2 cut(s) 811, 865
BsuI GTATCC 2 cut(s) 108, 429
BsuRI GGCC 1 cut(s) 187
BtsCI GGATG 3 cut(s) 64, 607, 904
BtsIMutI CAGTG 4 cut(s) 120, 120, 336, 646
BveI ACCTGC 2 cut(s) 706, 994
Cac8I GCNNGC 2 cut(s) 1035, 1340
CfoI GCGC 1 cut(s) 1113
Cfr13I GGNCC 2 cut(s) 185, 1253
Csp6I GTAC 5 cut(s) 196, 492, 704, 845, 983
CviQI GTAC 5 cut(s) 196, 492, 704, 845, 983
DdeI CTNAG 5 cut(s) 414, 894, 998, 1114, 1442
DpnI GATC 9 cut(s) 369, 513, 555, 664, 673, 736, 1095, 1266, 1322
DpnII GATC 9 cut(s) 367, 511, 553, 662, 671, 734, 1093, 1264, 1320
DrdI GACNNNNNNGTC 1 cut(s) 1186
DseDI GACNNNNNNGTC 1 cut(s) 1186
Eco31I GGTCTC 1 cut(s) 693
Eco32I GATATC 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 1253
Eco57I CTGAAG 3 cut(s) 414, 568, 864
EcoRI GAATTC 1 cut(s) 43
EcoRII CCWGG 3 cut(s) 403, 1242, 1293
EcoRV GATATC 1 cut(s) 106
EcoT22I ATGCAT 2 cut(s) 717, 1051
FalI AAGNNNNNCTT 2 cut(s) 1169, 1201
FaqI GGGAC 2 cut(s) 242, 942
FauI CCCGC 1 cut(s) 1042
FauNDI CATATG 2 cut(s) 924, 1135
FblI GTMKAC 2 cut(s) 810, 864
Fnu4HI GCNGC 3 cut(s) 543, 603, 990
FokI GGATG 3 cut(s) 51, 594, 891
Fsp4HI GCNGC 3 cut(s) 543, 603, 990
FspBI CTAG 3 cut(s) 509, 783, 1268
GlaI GCGC 1 cut(s) 1112
GluI GCNGC 3 cut(s) 543, 603, 990
HaeIII GGCC 1 cut(s) 187
HapII CCGG 2 cut(s) 945, 969
HhaI GCGC 1 cut(s) 1113
Hin6I GCGC 1 cut(s) 1111
HinP1I GCGC 1 cut(s) 1111
HincII GTYRAC 1 cut(s) 237
HindII GTYRAC 1 cut(s) 237
HindIII AAGCTT 1 cut(s) 52
HinfI GANTC 4 cut(s) 375, 743, 948, 1277
HpaII CCGG 2 cut(s) 945, 969
HphI GGTGA 1 cut(s) 830
Hpy166II GTNNAC 4 cut(s) 118, 237, 811, 865
Hpy188I TCNGA 8 cut(s) 31, 394, 460, 516, 667, 1195, 1215, 1411
Hpy188III TCNNGA 6 cut(s) 68, 101, 952, 1103, 1268, 1384
Hpy8I GTNNAC 4 cut(s) 118, 237, 811, 865
HpyAV CCTTC 2 cut(s) 888, 1244
HpyCH4III ACNGT 6 cut(s) 124, 195, 650, 920, 1007, 1174
HpyCH4IV ACGT 1 cut(s) 1389
HpyF10VI GCNNNNNNNGC 4 cut(s) 542, 890, 1034, 1290
HpyF3I CTNAG 5 cut(s) 414, 894, 998, 1114, 1442
HpySE526I ACGT 1 cut(s) 1389
HspAI GCGC 1 cut(s) 1111
Kzo9I GATC 9 cut(s) 367, 511, 553, 662, 671, 734, 1093, 1264, 1320
LmnI GCTCC 5 cut(s) 37, 283, 433, 539, 1141
Lsp1109I GCAGC 3 cut(s) 554, 614, 1001
LweI GCATC 2 cut(s) 304, 913
MaeI CTAG 3 cut(s) 509, 783, 1268
MaeII ACGT 1 cut(s) 1389
MaeIII GTNAC 2 cut(s) 328, 719
MalI GATC 9 cut(s) 369, 513, 555, 664, 673, 736, 1095, 1266, 1322
MboI GATC 9 cut(s) 367, 511, 553, 662, 671, 734, 1093, 1264, 1320
MfeI CAATTG 1 cut(s) 446
MflI RGATCY 3 cut(s) 553, 662, 734
MluCI AATT 9 cut(s) 43, 247, 268, 409, 446, 993, 1010, 1084, 1236
MmeI TCCRAC 1 cut(s) 304
Mph1103I ATGCAT 2 cut(s) 717, 1051
MroXI GAANNNNTTC 1 cut(s) 388
MseI TTAA 4 cut(s) 1083, 1203, 1239, 1448
MslI CAYNNNNRTG 2 cut(s) 207, 651
MspI CCGG 2 cut(s) 945, 969
MspR9I CCNGG 4 cut(s) 405, 969, 1244, 1295
MunI CAATTG 1 cut(s) 446
Mva1269I GAATGC 1 cut(s) 1364
MvaI CCWGG 3 cut(s) 405, 1244, 1295
MvnI CGCG 1 cut(s) 1037
MwoI GCNNNNNNNGC 4 cut(s) 542, 890, 1034, 1290
NciI CCSGG 1 cut(s) 969
NdeI CATATG 2 cut(s) 924, 1135
NdeII GATC 9 cut(s) 367, 511, 553, 662, 671, 734, 1093, 1264, 1320
NlaIV GGNNCC 2 cut(s) 555, 821
NsiI ATGCAT 2 cut(s) 717, 1051
NspI RCATGY 5 cut(s) 212, 235, 877, 1111, 1342
PaeI GCATGC 1 cut(s) 1342
PaqCI CACCTGC 1 cut(s) 706
PctI GAATGC 1 cut(s) 1364
PdmI GAANNNNTTC 1 cut(s) 388
PfeI GAWTC 4 cut(s) 375, 743, 948, 1277
PflMI CCANNNNNTGG 3 cut(s) 364, 488, 623
PfoI TCCNGGA 1 cut(s) 967
PkrI GCNGC 3 cut(s) 544, 604, 991
Psp1406I AACGTT 1 cut(s) 1389
Psp6I CCWGG 3 cut(s) 403, 1242, 1293
PspGI CCWGG 3 cut(s) 403, 1242, 1293
PspN4I GGNNCC 2 cut(s) 555, 821
PspPI GGNCC 2 cut(s) 185, 1253
PstI CTGCAG 1 cut(s) 991
PsuI RGATCY 3 cut(s) 553, 662, 734
RsaI GTAC 5 cut(s) 197, 493, 705, 846, 984
RsaNI GTAC 5 cut(s) 196, 492, 704, 845, 983
RseI CAYNNNNRTG 2 cut(s) 207, 651
SaqAI TTAA 4 cut(s) 1083, 1203, 1239, 1448
SatI GCNGC 3 cut(s) 543, 603, 990
Sau3AI GATC 9 cut(s) 367, 511, 553, 662, 671, 734, 1093, 1264, 1320
Sau96I GGNCC 2 cut(s) 185, 1253
ScrFI CCNGG 4 cut(s) 405, 969, 1244, 1295
SfaNI GCATC 2 cut(s) 304, 913
SfcI CTRYAG 2 cut(s) 738, 987
SinI GGWCC 1 cut(s) 1253
SmiMI CAYNNNNRTG 2 cut(s) 207, 651
SmlI CTYRAG 1 cut(s) 690
SmoI CTYRAG 1 cut(s) 690
SphI GCATGC 1 cut(s) 1342
Sse9I AATT 9 cut(s) 43, 247, 268, 409, 446, 993, 1010, 1084, 1236
SsiI CCGC 2 cut(s) 240, 1035
SspMI CTAG 3 cut(s) 509, 783, 1268
StyD4I CCNGG 4 cut(s) 403, 967, 1242, 1293
TaaI ACNGT 6 cut(s) 124, 195, 650, 920, 1007, 1174
TaiI ACGT 1 cut(s) 1392
TaqI TCGA 2 cut(s) 1092, 1229
TasI AATT 9 cut(s) 43, 247, 268, 409, 446, 993, 1010, 1084, 1236
TfiI GAWTC 4 cut(s) 375, 743, 948, 1277
Tru1I TTAA 4 cut(s) 1083, 1203, 1239, 1448
Tru9I TTAA 4 cut(s) 1083, 1203, 1239, 1448
TscAI CASTG 4 cut(s) 120, 127, 343, 653
TseI GCWGC 3 cut(s) 542, 602, 989
TspDTI ATGAA 5 cut(s) 288, 465, 789, 903, 1056
TspGWI ACGGA 1 cut(s) 387
TspRI CASTG 4 cut(s) 120, 127, 343, 653
Van91I CCANNNNNTGG 3 cut(s) 364, 488, 623
VpaK11BI GGWCC 1 cut(s) 1253
XapI RAATTY 3 cut(s) 43, 247, 409
XbaI TCTAGA 1 cut(s) 1267
XceI RCATGY 5 cut(s) 212, 235, 877, 1111, 1342
XcmI CCANNNNNNNNNTGG 2 cut(s) 650, 1240
XmiI GTMKAC 2 cut(s) 810, 864
XmnI GAANNNNTTC 1 cut(s) 388
XspI CTAG 3 cut(s) 509, 783, 1268
Zsp2I ATGCAT 2 cut(s) 717, 1051
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.