Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0007273

Physical Location & Seq

Genomic Coordinates Reverse (-)

25679739 .. 25684096

Gene Structure 4358 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG227700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGGGGCAAAGAAATATGCTATGCCCTAGTCAGATGATGGATTTGGAAATGTATCAACAAGGTGAAGCTTATCTCTGTCCGCCACCCTCCATCCATTTTGGCGGCTCAACCAGTATCCAACAACCTAATATTCACACAATGGTAACAGCATCAGGGAGCAGTACTAATTTTGACACCCAACATTTACCCGAGCGTTATGATAGTGCCCCATTCTACGGAATGACCCAATACAATGCTCAGCATCATCATAATGTTGATTTGGGTGTTGCAACTCCAGCCAACTTTTATTATTCCTACATGACACCTTCATCTAGCTCTGGGGTATTACCTGTTCCTATGAATCATGGGGCCTCTGATTTGCTGCCTTCTTCTAGCAATTATGGAGTCGTCGGAATTTCTGCAGATGAGTATGGAAGGAATAGTCGCATCATGGATGATCTCAGAGGTCCATGCAAGAGAAAGAATCCTGAATGCCTGCCGGGGAATTTCCAATATTTCAATGCCTCTGCAAGCCCTAGTACTTCTGTGCCTCCTTTGAATATGAGGCATCCTGAAGGGGTAGCTGTAATGGATGCTGTAAACTTTGCCCTACCTCCTCAGTTCGTAGGAACTGGCAATCCACCAATTATGGAAGCTGGACCTCAGATTAGCATGAGGAATCGTTCAGCTACAACTGGGTTGGAATCTGTACCAACACATGACCACAACCATCTGAGTCAAGGAAACTATGTGGGTCAGCGCTTTCAGCCGGCTGGAACACTCTGGTTGGACCAACATTTAAGTAGTAATAGTGGAGATGGAGGAGCTTCAGCCTGGAATCAAGTTCCTATTCCTTTTATGCATGGTGGCAATGTCGGCGGAGGTTCCATGGACAGTGTCAACATGGGTATGCAAAGATATCATGATTCATCTAGCAACAGAAGTTCCTCTATTCTCCGGCATCCTCCTCCGCTCAACCACCGGCATCAAAATCATCACGTAGCTCCACCACCCATGCAAGGATTGAGAGGCCACAACCTGAATCTTCCCCACGTAGCCACAGAACCTTCATATAGACTACCCTCAAGTTCCTCACGCAGCTCCACCAGGAATCCATCTCAGAATGGTCTGGAGATTGGTCGTAGGCAACCAGGACCCATTCCACAAACCGGCTTTAGGATATACAGGCCTCACCAAGGAGTCATTTCTGAGACAGCTCTAAGACACCACAACCTTGCGCATTGGAGAGTTCTTGGGGTTGATGAGGGTGTCATACTAGATGTTCCAGAATTTGGCAACTTTGGTGACCAGCACAGAGATATGCGGTTGGACATAGAGGACATGTCCTATGAGGTAAATTCAGCAACTTCAATAACTAAATTAAATAAAATGATCAGGGGTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

461

Amino Acids

50.52

Weight (kDa)

6.69

Isoelectric Point (pI)

56.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53190 AT1G53190 AT3G15070 AT3G15070
fragaria_vesca	FvH4_3g19090 FvH4_3g19090 FvH4_3g19090
malus_domestica	MD03G1237000.v1.1 MD11G1257600.v1.1
prunus_persica	Prupe.4G172400_v2.0.a1 Prupe.4G172400_v2.0.a1
pyrus_communis	pycom03g18280 pycom03g18290 pycom11g22740
rosa_chinensis	RchiOBHm_Chr5g0031881
rosa_laevigata	RLG00000033355
rosa_multiflora	Rmu_sc0005375.1_g000030
rosa_roxburghii	Rroxscaffold_1G00048380
rosa_rugosa	Rorug05G0128400 Rorug05G0128500
rosa_samantha	Rh5AG222700 Rh5BG222900 Rh5CG246000 Rh5DG227700
rosa_wichuraiana	Rw5G020290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1218
AccB7I	CCANNNNNTGG	1 cut(s)	1271
AccBSI	CCGCTC	1 cut(s)	952
AciI	CCGC	5 cut(s)	80, 102, 858, 950, 1303
AcsI	RAATTY	4 cut(s)	393, 484, 1268, 1336
AcuI	CTGAAG	2 cut(s)	573, 792
AfaI	GTAC	3 cut(s)	163, 520, 690
AfeI	AGCGCT	1 cut(s)	740
AfiI	CCNNNNNNNGG	6 cut(s)	215, 998, 1148, 1155, 1175, 1271
AflIII	ACRYGT	1 cut(s)	1320
AgsI	TTSAA	3 cut(s)	499, 538, 1350
AjnI	CCWGG	3 cut(s)	812, 1085, 1129
AloI	GAACNNNNNNTCC	2 cut(s)	601, 633
AluBI	AGCT	9 cut(s)	68, 315, 563, 635, 668, 806, 983, 1080, 1196
AluI	AGCT	9 cut(s)	68, 315, 563, 635, 668, 806, 983, 1080, 1196
Alw26I	GTCTC	1 cut(s)	1184
Ama87I	CYCGRG	1 cut(s)	188
Aor51HI	AGCGCT	1 cut(s)	740
AoxI	GGCC	3 cut(s)	348, 1009, 1166
ApeKI	GCWGC	2 cut(s)	361, 1077
ApoI	RAATTY	4 cut(s)	393, 484, 1268, 1336
AspLEI	GCGC	2 cut(s)	741, 1219
AspS9I	GGNCC	5 cut(s)	348, 446, 638, 769, 1133
AsuC2I	CCSGG	1 cut(s)	480
AsuHPI	GGTGA	3 cut(s)	74, 1163, 1295
AvaI	CYCGRG	1 cut(s)	188
AvaII	GGWCC	4 cut(s)	446, 638, 769, 1133
BaeGI	GKGCMC	1 cut(s)	208
BbvI	GCAGC	2 cut(s)	348, 1089
BccI	CCATC	5 cut(s)	31, 98, 717, 791, 1102
BciT130I	CCWGG	3 cut(s)	814, 1087, 1131
BciVI	GTATCC	1 cut(s)	125
BclI	TGATCA	1 cut(s)	1371
BcnI	CCSGG	1 cut(s)	480
BcoDI	GTCTC	1 cut(s)	1184
BfaI	CTAG	6 cut(s)	27, 312, 372, 516, 912, 1256
BfmI	CTRYAG	1 cut(s)	399
BfoI	RGCGCY	1 cut(s)	742
BfuI	GTATCC	1 cut(s)	125
BisI	GCNGC	3 cut(s)	103, 362, 1078
BlpI	GCTNAGC	1 cut(s)	237
BlsI	GCNGC	3 cut(s)	104, 363, 1079
BmcAI	AGTACT	2 cut(s)	163, 520
Bme1390I	CCNGG	4 cut(s)	480, 814, 1087, 1131
Bme18I	GGWCC	4 cut(s)	446, 638, 769, 1133
BmeT110I	CYCGRG	1 cut(s)	188
BmgT120I	GGNCC	5 cut(s)	348, 446, 638, 769, 1133
BmiI	GGNNCC	3 cut(s)	349, 865, 1135
BmrFI	CCNGG	4 cut(s)	480, 814, 1087, 1131
BmrI	ACTGGG	1 cut(s)	684
BmsI	GCATC	7 cut(s)	158, 250, 435, 556, 562, 949, 973
BmuI	ACTGGG	1 cut(s)	684
BpmI	CTGGAG	2 cut(s)	258, 1130
Bpu1102I	GCTNAGC	1 cut(s)	237
BpuEI	CTTGAG	1 cut(s)	1048
BpuMI	CCSGG	1 cut(s)	480
BsaAI	YACGTR	2 cut(s)	979, 1033
BsaJI	CCNNGG	3 cut(s)	479, 867, 1174
Bsc4I	CCNNNNNNNGG	6 cut(s)	215, 998, 1148, 1155, 1175, 1271
Bse118I	RCCGGY	3 cut(s)	748, 960, 1148
Bse1I	ACTGG	3 cut(s)	111, 616, 679
Bse3DI	GCAATG	1 cut(s)	856
BseBI	CCWGG	3 cut(s)	814, 1087, 1131
BseDI	CCNNGG	3 cut(s)	479, 867, 1174
BseGI	GGATG	5 cut(s)	90, 439, 547, 577, 940
BseLI	CCNNNNNNNGG	6 cut(s)	215, 998, 1148, 1155, 1175, 1271
BseMI	GCAATG	1 cut(s)	856
BseMII	CTCAG	7 cut(s)	251, 454, 611, 656, 704, 1112, 1179
BseNI	ACTGG	3 cut(s)	111, 616, 679
BseRI	GAGGAG	3 cut(s)	585, 816, 936
BseSI	GKGCMC	1 cut(s)	208
BseXI	GCAGC	2 cut(s)	348, 1089
BshFI	GGCC	3 cut(s)	350, 1011, 1168
BsiHKCI	CYCGRG	1 cut(s)	188
BsiSI	CCGG	5 cut(s)	479, 749, 937, 961, 1149
BslI	CCNNNNNNNGG	6 cut(s)	215, 998, 1148, 1155, 1175, 1271
BsmAI	GTCTC	1 cut(s)	1184
BsmI	GAATGC	1 cut(s)	476
BsnI	GGCC	3 cut(s)	350, 1011, 1168
BsoBI	CYCGRG	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	208
Bsp143I	GATC	2 cut(s)	436, 1371
Bsp1720I	GCTNAGC	1 cut(s)	237
Bsp19I	CCATGG	1 cut(s)	867
BspACI	CCGC	5 cut(s)	80, 102, 858, 950, 1303
BspANI	GGCC	3 cut(s)	350, 1011, 1168
BspCNI	CTCAG	7 cut(s)	250, 453, 610, 655, 705, 1111, 1180
BspHI	TCATGA	1 cut(s)	901
BspLI	GGNNCC	3 cut(s)	349, 865, 1135
BspMAI	CTGCAG	1 cut(s)	403
BsrBI	CCGCTC	1 cut(s)	952
BsrDI	GCAATG	1 cut(s)	856
BsrFI	RCCGGY	3 cut(s)	748, 960, 1148
BsrI	ACTGG	3 cut(s)	111, 616, 679
BssAI	RCCGGY	3 cut(s)	748, 960, 1148
BssECI	CCNNGG	3 cut(s)	479, 867, 1174
BssMI	GATC	2 cut(s)	436, 1371
BssT1I	CCWWGG	2 cut(s)	867, 1174
Bst2UI	CCWGG	3 cut(s)	814, 1087, 1131
Bst4CI	ACNGT	1 cut(s)	875
BstBAI	YACGTR	2 cut(s)	979, 1033
BstC8I	GCNNGC	3 cut(s)	476, 511, 750
BstDEI	CTNAG	8 cut(s)	237, 440, 597, 642, 713, 1098, 1188, 1199
BstDSI	CCRYGG	1 cut(s)	867
BstEII	GGTNACC	1 cut(s)	1283
BstENI	CCTNNNNNAGG	1 cut(s)	1173
BstF5I	GGATG	5 cut(s)	90, 439, 547, 577, 940
BstH2I	RGCGCY	1 cut(s)	742
BstHHI	GCGC	2 cut(s)	741, 1219
BstKTI	GATC	2 cut(s)	439, 1374
BstMAI	GTCTC	1 cut(s)	1184
BstMBI	GATC	2 cut(s)	436, 1371
BstMWI	GCNNNNNNNGC	3 cut(s)	275, 745, 855
BstNI	CCWGG	3 cut(s)	814, 1087, 1131
BstNSI	RCATGY	1 cut(s)	1324
BstPI	GGTNACC	1 cut(s)	1283
BstSCI	CCNGG	4 cut(s)	478, 812, 1085, 1129
BstSFI	CTRYAG	1 cut(s)	399
BstSLI	GKGCMC	1 cut(s)	208
BstV1I	GCAGC	2 cut(s)	348, 1089
BsuI	GTATCC	1 cut(s)	125
BsuRI	GGCC	3 cut(s)	350, 1011, 1168
BtgI	CCRYGG	1 cut(s)	867
BtsCI	GGATG	5 cut(s)	90, 439, 547, 577, 940
BtsIMutI	CAGTG	1 cut(s)	880
Cac8I	GCNNGC	3 cut(s)	476, 511, 750
CciI	TCATGA	1 cut(s)	901
CfoI	GCGC	2 cut(s)	741, 1219
Cfr10I	RCCGGY	3 cut(s)	748, 960, 1148
Cfr13I	GGNCC	5 cut(s)	348, 446, 638, 769, 1133
Csp6I	GTAC	3 cut(s)	162, 519, 689
CviQI	GTAC	3 cut(s)	162, 519, 689
DdeI	CTNAG	8 cut(s)	237, 440, 597, 642, 713, 1098, 1188, 1199
DpnI	GATC	2 cut(s)	438, 1373
DpnII	GATC	2 cut(s)	436, 1371
EciI	GGCGGA	2 cut(s)	69, 873
Eco130I	CCWWGG	2 cut(s)	867, 1174
Eco147I	AGGCCT	1 cut(s)	1168
Eco32I	GATATC	1 cut(s)	899
Eco47I	GGWCC	4 cut(s)	446, 638, 769, 1133
Eco47III	AGCGCT	1 cut(s)	740
Eco57I	CTGAAG	2 cut(s)	573, 792
Eco88I	CYCGRG	1 cut(s)	188
Eco91I	GGTNACC	1 cut(s)	1283
EcoNI	CCTNNNNNAGG	1 cut(s)	1173
EcoO109I	RGGNCCY	2 cut(s)	348, 1133
EcoO65I	GGTNACC	1 cut(s)	1283
EcoRII	CCWGG	3 cut(s)	812, 1085, 1129
EcoRV	GATATC	1 cut(s)	899
EcoT14I	CCWWGG	2 cut(s)	867, 1174
EcoT22I	ATGCAT	1 cut(s)	843
ErhI	CCWWGG	2 cut(s)	867, 1174
FbaI	TGATCA	1 cut(s)	1371
Fnu4HI	GCNGC	3 cut(s)	103, 362, 1078
FokI	GGATG	5 cut(s)	77, 446, 534, 584, 927
Fsp4HI	GCNGC	3 cut(s)	103, 362, 1078
FspBI	CTAG	6 cut(s)	27, 312, 372, 516, 912, 1256
FspI	TGCGCA	1 cut(s)	1218
GlaI	GCGC	2 cut(s)	740, 1218
GluI	GCNGC	3 cut(s)	103, 362, 1078
GsuI	CTGGAG	2 cut(s)	258, 1130
HaeII	RGCGCY	1 cut(s)	742
HaeIII	GGCC	3 cut(s)	350, 1011, 1168
HapII	CCGG	5 cut(s)	479, 749, 937, 961, 1149
HhaI	GCGC	2 cut(s)	741, 1219
Hin6I	GCGC	2 cut(s)	739, 1217
HinP1I	GCGC	2 cut(s)	739, 1217
HincII	GTYRAC	1 cut(s)	880
HindII	GTYRAC	1 cut(s)	880
HindIII	AAGCTT	1 cut(s)	66
HpaII	CCGG	5 cut(s)	479, 749, 937, 961, 1149
HphI	GGTGA	3 cut(s)	74, 1163, 1295
Hpy166II	GTNNAC	2 cut(s)	580, 880
Hpy188I	TCNGA	8 cut(s)	33, 355, 392, 443, 645, 714, 1101, 1189
Hpy188III	TCNNGA	5 cut(s)	467, 551, 902, 1109, 1265
Hpy8I	GTNNAC	2 cut(s)	580, 880
Hpy99I	CGWCG	1 cut(s)	392
HpyAV	CCTTC	5 cut(s)	315, 375, 408, 548, 1056
HpyCH4III	ACNGT	1 cut(s)	875
HpyCH4IV	ACGT	2 cut(s)	978, 1032
HpyCH4V	TGCA	7 cut(s)	269, 401, 453, 509, 841, 892, 997
HpyF10VI	GCNNNNNNNGC	3 cut(s)	275, 745, 855
HpyF3I	CTNAG	8 cut(s)	237, 440, 597, 642, 713, 1098, 1188, 1199
HpySE526I	ACGT	2 cut(s)	978, 1032
HspAI	GCGC	2 cut(s)	739, 1217
KroI	GCCGGC	1 cut(s)	748
KroNI	GCCGGC	1 cut(s)	750
Ksp22I	TGATCA	1 cut(s)	1371
Kzo9I	GATC	2 cut(s)	436, 1371
LmnI	GCTCC	4 cut(s)	156, 803, 988, 1085
Lsp1109I	GCAGC	2 cut(s)	348, 1089
LweI	GCATC	7 cut(s)	158, 250, 435, 556, 562, 949, 973
MaeI	CTAG	6 cut(s)	27, 312, 372, 516, 912, 1256
MaeII	ACGT	2 cut(s)	978, 1032
MaeIII	GTNAC	2 cut(s)	142, 1283
MalI	GATC	2 cut(s)	438, 1373
MbiI	CCGCTC	1 cut(s)	952
MboI	GATC	2 cut(s)	436, 1371
MboII	GAAGA	2 cut(s)	360, 1016
MhlI	GDGCHC	1 cut(s)	208
MluCI	AATT	8 cut(s)	166, 376, 393, 484, 624, 1268, 1336, 1358
MlyI	GAGTC	3 cut(s)	393, 724, 1188
MmeI	TCCRAC	5 cut(s)	142, 370, 660, 747, 1287
Mph1103I	ATGCAT	1 cut(s)	843
MroNI	GCCGGC	1 cut(s)	748
MseI	TTAA	2 cut(s)	779, 1361
MslI	CAYNNNNRTG	2 cut(s)	249, 887
MspI	CCGG	5 cut(s)	479, 749, 937, 961, 1149
MspR9I	CCNGG	4 cut(s)	480, 814, 1087, 1131
Mva1269I	GAATGC	1 cut(s)	476
MvaI	CCWGG	3 cut(s)	814, 1087, 1131
MwoI	GCNNNNNNNGC	3 cut(s)	275, 745, 855
NaeI	GCCGGC	1 cut(s)	750
NciI	CCSGG	1 cut(s)	480
NcoI	CCATGG	1 cut(s)	867
NdeII	GATC	2 cut(s)	436, 1371
NgoMIV	GCCGGC	1 cut(s)	748
NlaIV	GGNNCC	3 cut(s)	349, 865, 1135
NmuCI	GTSAC	1 cut(s)	1283
NsbI	TGCGCA	1 cut(s)	1218
NsiI	ATGCAT	1 cut(s)	843
NspI	RCATGY	1 cut(s)	1324
PagI	TCATGA	1 cut(s)	901
PceI	AGGCCT	1 cut(s)	1168
PciI	ACATGT	1 cut(s)	1320
PctI	GAATGC	1 cut(s)	476
PdiI	GCCGGC	1 cut(s)	750
PfeI	GAWTC	8 cut(s)	340, 463, 658, 683, 817, 905, 1021, 1090
PflFI	GACNNNGTC	1 cut(s)	875
PflMI	CCANNNNNTGG	1 cut(s)	1271
PkrI	GCNGC	3 cut(s)	104, 363, 1079
PleI	GAGTC	3 cut(s)	392, 723, 1187
PpsI	GAGTC	3 cut(s)	392, 723, 1187
Ppu21I	YACGTR	2 cut(s)	979, 1033
PpuMI	RGGWCCY	1 cut(s)	1133
PscI	ACATGT	1 cut(s)	1320
Psp5II	RGGWCCY	1 cut(s)	1133
Psp6I	CCWGG	3 cut(s)	812, 1085, 1129
PspEI	GGTNACC	1 cut(s)	1283
PspGI	CCWGG	3 cut(s)	812, 1085, 1129
PspN4I	GGNNCC	3 cut(s)	349, 865, 1135
PspPI	GGNCC	5 cut(s)	348, 446, 638, 769, 1133
PspPPI	RGGWCCY	1 cut(s)	1133
PsrI	GAACNNNNNNTAC	2 cut(s)	315, 347
PstI	CTGCAG	1 cut(s)	403
PsyI	GACNNNGTC	1 cut(s)	875
RsaI	GTAC	3 cut(s)	163, 520, 690
RsaNI	GTAC	3 cut(s)	162, 519, 689
RseI	CAYNNNNRTG	2 cut(s)	249, 887
SaqAI	TTAA	2 cut(s)	779, 1361
SatI	GCNGC	3 cut(s)	103, 362, 1078
Sau3AI	GATC	2 cut(s)	436, 1371
Sau96I	GGNCC	5 cut(s)	348, 446, 638, 769, 1133
ScaI	AGTACT	2 cut(s)	163, 520
SchI	GAGTC	3 cut(s)	393, 724, 1188
ScrFI	CCNGG	4 cut(s)	480, 814, 1087, 1131
SduI	GDGCHC	1 cut(s)	208
SfaNI	GCATC	7 cut(s)	158, 250, 435, 556, 562, 949, 973
SfcI	CTRYAG	1 cut(s)	399
SinI	GGWCC	4 cut(s)	446, 638, 769, 1133
SmiMI	CAYNNNNRTG	2 cut(s)	249, 887
SmlI	CTYRAG	1 cut(s)	1063
SmoI	CTYRAG	1 cut(s)	1063
Sse9I	AATT	8 cut(s)	166, 376, 393, 484, 624, 1268, 1336, 1358
SseBI	AGGCCT	1 cut(s)	1168
SsiI	CCGC	5 cut(s)	80, 102, 858, 950, 1303
SspI	AATATT	2 cut(s)	130, 494
SspMI	CTAG	6 cut(s)	27, 312, 372, 516, 912, 1256
StuI	AGGCCT	1 cut(s)	1168
StyD4I	CCNGG	4 cut(s)	478, 812, 1085, 1129
StyI	CCWWGG	2 cut(s)	867, 1174
TaaI	ACNGT	1 cut(s)	875
TaiI	ACGT	2 cut(s)	981, 1035
TasI	AATT	8 cut(s)	166, 376, 393, 484, 624, 1268, 1336, 1358
TatI	WGTACW	2 cut(s)	161, 518
TauI	GCSGC	1 cut(s)	105
TfiI	GAWTC	8 cut(s)	340, 463, 658, 683, 817, 905, 1021, 1090
Tru1I	TTAA	2 cut(s)	779, 1361
Tru9I	TTAA	2 cut(s)	779, 1361
TscAI	CASTG	1 cut(s)	880
TseFI	GTSAC	1 cut(s)	1283
TseI	GCWGC	2 cut(s)	361, 1077
Tsp45I	GTSAC	1 cut(s)	1283
TspDTI	ATGAA	4 cut(s)	297, 353, 897, 1038
TspGWI	ACGGA	1 cut(s)	231
TspRI	CASTG	1 cut(s)	880
Tth111I	GACNNNGTC	1 cut(s)	875
Van91I	CCANNNNNTGG	1 cut(s)	1271
VpaK11BI	GGWCC	4 cut(s)	446, 638, 769, 1133
XagI	CCTNNNNNAGG	1 cut(s)	1173
XapI	RAATTY	4 cut(s)	393, 484, 1268, 1336
XceI	RCATGY	1 cut(s)	1324
XspI	CTAG	6 cut(s)	27, 312, 372, 516, 912, 1256
ZrmI	AGTACT	2 cut(s)	163, 520
Zsp2I	ATGCAT	1 cut(s)	843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.