Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0007273

Physical Location & Seq

Genomic Coordinates Forward (+)

19283827 .. 19284525

Gene Structure 699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g18280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGGGCAAAGAAATATGCTATGCCCTAGTCAGATGATTGATTTGGAAATGAGTCAACAAGGGGAAGATTATCTCTGCCCCCCACCCTCTGTCCATTTTGGGGGCGCTTCTAGTATCCAACAGCACAATGTTCACACAATGGTAACAGCTTCAGGGAGCACTACTAGTTTTGATGCCCAACATTTACCGGAGCGTTATGATAATGCCGCATTCTATAGGATGACCCAGTACAGTGTTCAGCATCATCAACATAATGTTTATTTGGGTGTTGCAACTCCAGCCAACTATTACTATTCATACATGACCCCTTCGTCTAGTACTGGGGTGTTACCTGTTCCTCTTAGTCACGGGGCTTCTGATCCTTCGCCATCTTCTGGCCATTATGGAGTCCTTGGAATTTCTGCAGATGAGTATGATAGAAATAGTCGCATCATGGATGATCCCAGAGGTCCGTACAAGAGAAAAAACCCTGAAGGCCTACCAGGGAATTTTCAATATTTTAATGCCTCTGCAACCCCTAGTTCTTCAGTGCCTCCTTTGAATATGAGGAATCCTGATGGAGTTGCTGTAATGGATGCTGTAAATTATGCCTTGCCTCAGTATGCGGGAACTGGGAATCCACCAATTATGGAAGCAGGACCTCAGAGTAGTATGAGGAACACGATCGATCAGCTACAACTGGGCTTGATTCTGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

233

Amino Acids

25.28

Weight (kDa)

5.61

Isoelectric Point (pI)

53.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53190 AT1G53190 AT3G15070 AT3G15070
fragaria_vesca	FvH4_3g19090 FvH4_3g19090 FvH4_3g19090
malus_domestica	MD03G1237000.v1.1 MD11G1257600.v1.1
prunus_persica	Prupe.4G172400_v2.0.a1 Prupe.4G172400_v2.0.a1
pyrus_communis	pycom03g18280 pycom03g18290 pycom11g22740
rosa_chinensis	RchiOBHm_Chr5g0031881
rosa_laevigata	RLG00000033355
rosa_multiflora	Rmu_sc0005375.1_g000030
rosa_roxburghii	Rroxscaffold_1G00048380
rosa_rugosa	Rorug05G0128400 Rorug05G0128500
rosa_samantha	Rh5AG222700 Rh5BG222900 Rh5CG246000 Rh5DG227700
rosa_wichuraiana	Rw5G020290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	310
AccB7I	CCANNNNNTGG	1 cut(s)	374
AciI	CCGC	2 cut(s)	207, 605
AclWI	GGATC	2 cut(s)	353, 434
AcoI	YGGCCR	1 cut(s)	376
AcsI	RAATTY	2 cut(s)	396, 487
AcuI	CTGAAG	3 cut(s)	135, 492, 510
AfaI	GTAC	3 cut(s)	230, 319, 455
AfiI	CCNNNNNNNGG	2 cut(s)	100, 374
AgsI	TTSAA	2 cut(s)	494, 541
AhlI	ACTAGT	1 cut(s)	164
AjnI	CCWGG	1 cut(s)	481
AloI	GAACNNNNNNTCC	2 cut(s)	601, 633
AluBI	AGCT	2 cut(s)	149, 673
AluI	AGCT	2 cut(s)	149, 673
Alw21I	GWGCWC	1 cut(s)	161
AlwI	GGATC	2 cut(s)	353, 434
AoxI	GGCC	2 cut(s)	376, 475
ApoI	RAATTY	2 cut(s)	396, 487
AspLEI	GCGC	1 cut(s)	107
AspS9I	GGNCC	2 cut(s)	449, 638
AvaII	GGWCC	2 cut(s)	449, 638
BalI	TGGCCA	1 cut(s)	378
Bbv12I	GWGCWC	1 cut(s)	161
BccI	CCATC	2 cut(s)	376, 551
BciT130I	CCWGG	1 cut(s)	483
BciVI	GTATCC	1 cut(s)	125
BcuI	ACTAGT	1 cut(s)	164
BfaI	CTAG	5 cut(s)	27, 111, 165, 315, 519
BfmI	CTRYAG	2 cut(s)	214, 402
BfoI	RGCGCY	1 cut(s)	108
BfuI	GTATCC	1 cut(s)	125
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
BmcAI	AGTACT	1 cut(s)	319
Bme1390I	CCNGG	1 cut(s)	483
Bme18I	GGWCC	2 cut(s)	449, 638
BmgT120I	GGNCC	2 cut(s)	449, 638
BmrFI	CCNGG	1 cut(s)	483
BmrI	ACTGGG	4 cut(s)	220, 330, 621, 689
BmsI	GCATC	4 cut(s)	163, 250, 438, 565
BmuI	ACTGGG	4 cut(s)	220, 330, 621, 689
BpmI	CTGGAG	1 cut(s)	261
Bsa29I	ATCGAT	1 cut(s)	666
BsaJI	CCNNGG	2 cut(s)	391, 482
BsaWI	WCCGGW	1 cut(s)	187
BsaXI	ACNNNNNCTCC	2 cut(s)	552, 582
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 374
Bse1I	ACTGG	4 cut(s)	226, 325, 616, 684
BseBI	CCWGG	1 cut(s)	483
BseCI	ATCGAT	1 cut(s)	666
BseDI	CCNNGG	2 cut(s)	391, 482
BseGI	GGATG	3 cut(s)	225, 442, 580
BseLI	CCNNNNNNNGG	2 cut(s)	100, 374
BseMII	CTCAG	2 cut(s)	611, 656
BseNI	ACTGG	4 cut(s)	226, 325, 616, 684
Bsh1285I	CGRYCG	1 cut(s)	666
BshFI	GGCC	2 cut(s)	378, 477
BshVI	ATCGAT	1 cut(s)	666
BsiEI	CGRYCG	1 cut(s)	666
BsiHKAI	GWGCWC	1 cut(s)	161
BsiSI	CCGG	1 cut(s)	188
BslI	CCNNNNNNNGG	2 cut(s)	100, 374
BsmI	GAATGC	1 cut(s)	209
BsnI	GGCC	2 cut(s)	378, 477
Bsp1286I	GDGCHC	1 cut(s)	161
Bsp143I	GATC	4 cut(s)	358, 439, 663, 667
BspACI	CCGC	2 cut(s)	207, 605
BspANI	GGCC	2 cut(s)	378, 477
BspCNI	CTCAG	2 cut(s)	610, 655
BspDI	ATCGAT	1 cut(s)	666
BspMAI	CTGCAG	1 cut(s)	406
BspPI	GGATC	2 cut(s)	353, 434
BsrI	ACTGG	4 cut(s)	226, 325, 616, 684
BssECI	CCNNGG	2 cut(s)	391, 482
BssMI	GATC	4 cut(s)	358, 439, 663, 667
BssT1I	CCWWGG	1 cut(s)	391
Bst2UI	CCWGG	1 cut(s)	483
Bst4CI	ACNGT	1 cut(s)	233
BstDEI	CTNAG	3 cut(s)	341, 597, 642
BstF5I	GGATG	3 cut(s)	225, 442, 580
BstH2I	RGCGCY	1 cut(s)	108
BstHHI	GCGC	1 cut(s)	107
BstKTI	GATC	4 cut(s)	361, 442, 666, 670
BstMBI	GATC	4 cut(s)	358, 439, 663, 667
BstMCI	CGRYCG	1 cut(s)	666
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstNI	CCWGG	1 cut(s)	483
BstSCI	CCNGG	1 cut(s)	481
BstSFI	CTRYAG	2 cut(s)	214, 402
Bsu15I	ATCGAT	1 cut(s)	666
BsuI	GTATCC	1 cut(s)	125
BsuRI	GGCC	2 cut(s)	378, 477
BsuTUI	ATCGAT	1 cut(s)	666
BtsCI	GGATG	3 cut(s)	225, 442, 580
BtsIMutI	CAGTG	2 cut(s)	238, 534
CfoI	GCGC	1 cut(s)	107
Cfr13I	GGNCC	2 cut(s)	449, 638
ClaI	ATCGAT	1 cut(s)	666
Csp6I	GTAC	3 cut(s)	229, 318, 454
CviAII	CATG	2 cut(s)	301, 433
CviJI	RGCY	7 cut(s)	149, 281, 353, 378, 477, 673, 684
CviKI_1	RGCY	7 cut(s)	149, 281, 353, 378, 477, 673, 684
CviQI	GTAC	3 cut(s)	229, 318, 454
DdeI	CTNAG	3 cut(s)	341, 597, 642
DpnI	GATC	4 cut(s)	360, 441, 665, 669
DpnII	GATC	4 cut(s)	358, 439, 663, 667
DrdI	GACNNNNNNGTC	1 cut(s)	310
DseDI	GACNNNNNNGTC	1 cut(s)	310
EaeI	YGGCCR	1 cut(s)	376
Eco130I	CCWWGG	1 cut(s)	391
Eco147I	AGGCCT	1 cut(s)	477
Eco47I	GGWCC	2 cut(s)	449, 638
Eco57I	CTGAAG	3 cut(s)	135, 492, 510
EcoO109I	RGGNCCY	1 cut(s)	638
EcoRII	CCWGG	1 cut(s)	481
EcoT14I	CCWWGG	1 cut(s)	391
ErhI	CCWWGG	1 cut(s)	391
FaeI	CATG	2 cut(s)	304, 436
FatI	CATG	2 cut(s)	300, 432
FauI	CCCGC	1 cut(s)	598
Fnu4HI	GCNGC	1 cut(s)	207
FokI	GGATG	3 cut(s)	232, 449, 587
Fsp4HI	GCNGC	1 cut(s)	207
FspBI	CTAG	5 cut(s)	27, 111, 165, 315, 519
GlaI	GCGC	1 cut(s)	106
GluI	GCNGC	1 cut(s)	207
GsuI	CTGGAG	1 cut(s)	261
HaeII	RGCGCY	1 cut(s)	108
HaeIII	GGCC	2 cut(s)	378, 477
HapII	CCGG	1 cut(s)	188
HhaI	GCGC	1 cut(s)	107
Hin1II	CATG	2 cut(s)	304, 436
Hin6I	GCGC	1 cut(s)	105
HinP1I	GCGC	1 cut(s)	105
HincII	GTYRAC	1 cut(s)	56
HindII	GTYRAC	1 cut(s)	56
HinfI	GANTC	5 cut(s)	52, 387, 550, 616, 688
HpaII	CCGG	1 cut(s)	188
Hpy166II	GTNNAC	2 cut(s)	56, 133
Hpy188I	TCNGA	3 cut(s)	33, 358, 645
Hpy188III	TCNNGA	1 cut(s)	554
Hpy8I	GTNNAC	2 cut(s)	56, 133
HpyAV	CCTTC	3 cut(s)	318, 372, 467
HpyCH4III	ACNGT	1 cut(s)	233
HpyCH4V	TGCA	3 cut(s)	272, 404, 512
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpyF3I	CTNAG	3 cut(s)	341, 597, 642
Hsp92II	CATG	2 cut(s)	304, 436
HspAI	GCGC	1 cut(s)	105
Kzo9I	GATC	4 cut(s)	358, 439, 663, 667
LmnI	GCTCC	2 cut(s)	156, 190
LweI	GCATC	4 cut(s)	163, 250, 438, 565
MaeI	CTAG	5 cut(s)	27, 111, 165, 315, 519
MaeIII	GTNAC	3 cut(s)	142, 327, 344
MalI	GATC	4 cut(s)	360, 441, 665, 669
MboI	GATC	4 cut(s)	358, 439, 663, 667
MboII	GAAGA	3 cut(s)	77, 363, 516
MhlI	GDGCHC	1 cut(s)	161
MlsI	TGGCCA	1 cut(s)	378
MluCI	AATT	4 cut(s)	396, 487, 583, 624
MluNI	TGGCCA	1 cut(s)	378
MlyI	GAGTC	2 cut(s)	61, 396
MmeI	TCCRAC	1 cut(s)	142
MnlI	CCTC	9 cut(s)	97, 348, 440, 517, 540, 543, 606, 648, 651
Mox20I	TGGCCA	1 cut(s)	378
MscI	TGGCCA	1 cut(s)	378
MseI	TTAA	1 cut(s)	501
Msp20I	TGGCCA	1 cut(s)	378
MspI	CCGG	1 cut(s)	188
MspR9I	CCNGG	1 cut(s)	483
Mva1269I	GAATGC	1 cut(s)	209
MvaI	CCWGG	1 cut(s)	483
MwoI	GCNNNNNNNGC	1 cut(s)	278
NdeII	GATC	4 cut(s)	358, 439, 663, 667
NlaIII	CATG	2 cut(s)	304, 436
NmuCI	GTSAC	1 cut(s)	344
PceI	AGGCCT	1 cut(s)	477
PctI	GAATGC	1 cut(s)	209
PfeI	GAWTC	3 cut(s)	550, 616, 688
PflMI	CCANNNNNTGG	1 cut(s)	374
PkrI	GCNGC	1 cut(s)	208
Ple19I	CGATCG	1 cut(s)	666
PleI	GAGTC	2 cut(s)	60, 395
PpsI	GAGTC	2 cut(s)	60, 395
PpuMI	RGGWCCY	1 cut(s)	638
Psp5II	RGGWCCY	1 cut(s)	638
Psp6I	CCWGG	1 cut(s)	481
PspGI	CCWGG	1 cut(s)	481
PspPI	GGNCC	2 cut(s)	449, 638
PspPPI	RGGWCCY	1 cut(s)	638
PstI	CTGCAG	1 cut(s)	406
PvuI	CGATCG	1 cut(s)	666
RsaI	GTAC	3 cut(s)	230, 319, 455
RsaNI	GTAC	3 cut(s)	229, 318, 454
SaqAI	TTAA	1 cut(s)	501
SatI	GCNGC	1 cut(s)	207
Sau3AI	GATC	4 cut(s)	358, 439, 663, 667
Sau96I	GGNCC	2 cut(s)	449, 638
ScaI	AGTACT	1 cut(s)	319
SchI	GAGTC	2 cut(s)	61, 396
ScrFI	CCNGG	1 cut(s)	483
SduI	GDGCHC	1 cut(s)	161
SetI	ASST	5 cut(s)	151, 334, 451, 643, 675
SfaNI	GCATC	4 cut(s)	163, 250, 438, 565
SfcI	CTRYAG	2 cut(s)	214, 402
SinI	GGWCC	2 cut(s)	449, 638
SpeI	ACTAGT	1 cut(s)	164
Sse9I	AATT	4 cut(s)	396, 487, 583, 624
SseBI	AGGCCT	1 cut(s)	477
SsiI	CCGC	2 cut(s)	207, 605
SspI	AATATT	1 cut(s)	497
SspMI	CTAG	5 cut(s)	27, 111, 165, 315, 519
StuI	AGGCCT	1 cut(s)	477
StyD4I	CCNGG	1 cut(s)	481
StyI	CCWWGG	1 cut(s)	391
TaaI	ACNGT	1 cut(s)	233
TaqI	TCGA	1 cut(s)	666
TasI	AATT	4 cut(s)	396, 487, 583, 624
TatI	WGTACW	2 cut(s)	228, 317
TauI	GCSGC	1 cut(s)	209
TfiI	GAWTC	3 cut(s)	550, 616, 688
Tru1I	TTAA	1 cut(s)	501
Tru9I	TTAA	1 cut(s)	501
TscAI	CASTG	2 cut(s)	238, 534
TseFI	GTSAC	1 cut(s)	344
Tsp45I	GTSAC	1 cut(s)	344
TspDTI	ATGAA	1 cut(s)	285
TspGWI	ACGGA	1 cut(s)	441
TspRI	CASTG	2 cut(s)	238, 534
Van91I	CCANNNNNTGG	1 cut(s)	374
VpaK11BI	GGWCC	2 cut(s)	449, 638
XapI	RAATTY	2 cut(s)	396, 487
XspI	CTAG	5 cut(s)	27, 111, 165, 315, 519
ZrmI	AGTACT	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.