Rh5CG246000

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0007273
Physical Location & Seq
Reverse (-)
25707770 .. 25710175
2406 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG246000.1

Sequence Viewer

Length: 1509 bp
ATGGTAACAGCTTCAGGGAGCAGTACTAATTTTGACACCCAACATTTACCCGAGCGTTATGATAGTGCCCCATTCTACGGAATGACCCAATACAATGGTCAGCATCATCATAATCTTGATTTGGGTGTTGCAACTCCAGCCAACTTTTATTATTCCTACATGACACCTTCATCTAGCTCTGGGGTATTACCTGTTCCTATGAATCATGGGGCCTCTGATTCGCTGCCTTCTTCTAGCAATTATGGAGTCGTCGGAATTTCTGCAGATGAGTATGGAAGGAATAGTCGCATCATGGATGATCTCAGAGGTCCATGCAAGAGAAAGAATCCTGAATGCCTGCCAGGGAATTTCCAATATTTCAATGCCTCTGCAAGCCCTAGTACTTCTGTGCCTCCTTTGAATATGAGGCATCCTGAAGGGGTAGCTGTAATGGATGCTGTAAACTTTGCCCTACCTCCTCAGTTCGTAGGAACTGGTAATCCACCAATCATGGAAGCTGGACCTCAGATTAGCATGAGGAATCGTTCAGCTACAACTGGGTTGGAATCTGTACCAACACATGACCACAACCATCTAAGTCAAGGAAACTATGTGGGTCAGCGCTTTCAGCCGGCTGGAACACTCTGGTTGGACCAACATTTAAGTAGTAATAGTGGAGATGGAGGAGCTTCAGCCTGGAATCAAGTTCCTATTCCTTTTATGCATGGTGGCAATGTCGGCGGAGGTTCCATGGACAGTGTCAACATGGGTATGCAAAGATATCATGATTCATCTAGCAACAGAAGTTCCTCTATTCTCCGGCATCCTCCTCCGCTCAACCACCGGCATCAAAATCATCACGTAGCTCCACCACCCATGCAAGGATTGAGAGGCCACAACCTGAATCTTCCCCACGTAGCCACAGAACCTTCATATAGACTACCCTCAAGTTCCTCACGCAGCTCCACCAGGAATCCATCTCAGAATGGTCTGGAGATTGGTCGTAGGCAACCAGGACCCATTCCACAAACCGGCTTTAGGATATACAGGCCTCACCAAGGAGTCATTTCTGAGACAGCTCTAAGACACCACAACCTTGCGCATTGGAGAGTTCTTGGGGTTGATGAGGGTGTCATACTAGATGTTCCAGAATTTGGCAACTTTGGTGACCAGCACAGAGATATGCGGTTGGACATAGAGGACATGTCCTATGAGGAGCTTCTTGCATTGGGGGAACAAATTGGCCATGTAAACACTGGGTTGTCGGAGGATAGCATTAGCAAACAACTAAGGACAAGGAGTTATTTATCATCTGGTACAGTTATAAATCTGGAAGAAGCTGGATGTCCAGAGAAGGAAGTTGATTTTTGCATAATATGCCAGGATTATTATAAGAACCAGGAGAAGATAGGGACTCTTCATTGTGGACATGAGTATCATGCAGATTGCTTAAAGAAGTGGTTGCTTGTGAAAAATGTCTGCCCCATCTGCAAATCCGAAGCACTTATCACAGGGAAGAAGGATGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

502

Amino Acids

55.13

Weight (kDa)

6.39

Isoelectric Point (pI)

52.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 442 - 491 4.3e-08 RING-H2 zinc finger domain
zf-RING_2 PF13639 450 - 491 1.9e-11 Ring finger domain
zf-C3HC4_2 PF13923 450 - 490 1.8e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 450 - 490 1.9e-07 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1304, 1371
Acc16I TGCGCA 1 cut(s) 1080
AccB7I CCANNNNNTGG 1 cut(s) 1133
AccBSI CCGCTC 1 cut(s) 814
AciI CCGC 3 cut(s) 720, 812, 1165
AcoI YGGCCR 1 cut(s) 1222
AcsI RAATTY 3 cut(s) 255, 346, 1130
AcuI CTGAAG 2 cut(s) 435, 654
AfaI GTAC 4 cut(s) 25, 382, 552, 1297
AfeI AGCGCT 1 cut(s) 602
AfiI CCNNNNNNNGG 6 cut(s) 77, 860, 1010, 1017, 1037, 1133
AflIII ACRYGT 1 cut(s) 1182
AgsI TTSAA 2 cut(s) 361, 400
AjnI CCWGG 6 cut(s) 340, 674, 947, 991, 1359, 1377
AloI GAACNNNNNNTCC 2 cut(s) 463, 495
Alw26I GTCTC 1 cut(s) 1046
Ama87I CYCGRG 1 cut(s) 50
Aor51HI AGCGCT 1 cut(s) 602
AoxI GGCC 4 cut(s) 210, 871, 1028, 1222
ApeKI GCWGC 2 cut(s) 223, 939
ApoI RAATTY 3 cut(s) 255, 346, 1130
AspLEI GCGC 2 cut(s) 603, 1081
AspS9I GGNCC 5 cut(s) 210, 308, 500, 631, 995
AsuHPI GGTGA 2 cut(s) 1025, 1157
AvaI CYCGRG 1 cut(s) 50
AvaII GGWCC 4 cut(s) 308, 500, 631, 995
BaeGI GKGCMC 1 cut(s) 70
BaeI ACNNNNGTAYC 2 cut(s) 1397, 1430
BalI TGGCCA 1 cut(s) 1224
BbvI GCAGC 2 cut(s) 210, 951
BccI CCATC 4 cut(s) 579, 653, 964, 1472
BciT130I CCWGG 6 cut(s) 342, 676, 949, 993, 1361, 1379
BcoDI GTCTC 1 cut(s) 1046
BfaI CTAG 5 cut(s) 174, 234, 378, 774, 1118
BfmI CTRYAG 1 cut(s) 261
BfoI RGCGCY 1 cut(s) 604
BisI GCNGC 2 cut(s) 224, 940
BlsI GCNGC 2 cut(s) 225, 941
BmcAI AGTACT 2 cut(s) 25, 382
Bme1390I CCNGG 6 cut(s) 342, 676, 949, 993, 1361, 1379
Bme18I GGWCC 4 cut(s) 308, 500, 631, 995
BmeT110I CYCGRG 1 cut(s) 50
BmgT120I GGNCC 5 cut(s) 210, 308, 500, 631, 995
BmiI GGNNCC 3 cut(s) 211, 727, 997
BmrFI CCNGG 6 cut(s) 342, 676, 949, 993, 1361, 1379
BmrI ACTGGG 2 cut(s) 546, 1245
BmsI GCATC 6 cut(s) 112, 297, 418, 424, 811, 835
BmuI ACTGGG 2 cut(s) 546, 1245
BpmI CTGGAG 2 cut(s) 120, 992
BpuEI CTTGAG 1 cut(s) 910
BsaAI YACGTR 2 cut(s) 841, 895
BsaJI CCNNGG 3 cut(s) 341, 729, 1036
Bsc4I CCNNNNNNNGG 6 cut(s) 77, 860, 1010, 1017, 1037, 1133
Bse118I RCCGGY 3 cut(s) 610, 822, 1010
Bse1I ACTGG 3 cut(s) 478, 541, 1240
Bse3DI GCAATG 1 cut(s) 718
BseBI CCWGG 6 cut(s) 342, 676, 949, 993, 1361, 1379
BseDI CCNNGG 3 cut(s) 341, 729, 1036
BseGI GGATG 6 cut(s) 301, 409, 439, 802, 1328, 1507
BseLI CCNNNNNNNGG 6 cut(s) 77, 860, 1010, 1017, 1037, 1133
BseMI GCAATG 1 cut(s) 718
BseMII CTCAG 5 cut(s) 316, 473, 518, 974, 1041
BseNI ACTGG 3 cut(s) 478, 541, 1240
BseRI GAGGAG 4 cut(s) 447, 678, 798, 1208
BseSI GKGCMC 1 cut(s) 70
BseXI GCAGC 2 cut(s) 210, 951
BshFI GGCC 4 cut(s) 212, 873, 1030, 1224
BsiHKCI CYCGRG 1 cut(s) 50
BsiSI CCGG 4 cut(s) 611, 799, 823, 1011
BslFI GGGAC 1 cut(s) 1405
BslI CCNNNNNNNGG 6 cut(s) 77, 860, 1010, 1017, 1037, 1133
BsmAI GTCTC 1 cut(s) 1046
BsmFI GGGAC 1 cut(s) 1405
BsmI GAATGC 1 cut(s) 338
BsnI GGCC 4 cut(s) 212, 873, 1030, 1224
BsoBI CYCGRG 1 cut(s) 50
Bsp1286I GDGCHC 1 cut(s) 70
Bsp143I GATC 1 cut(s) 298
Bsp19I CCATGG 1 cut(s) 729
BspACI CCGC 3 cut(s) 720, 812, 1165
BspANI GGCC 4 cut(s) 212, 873, 1030, 1224
BspCNI CTCAG 5 cut(s) 315, 472, 517, 973, 1042
BspHI TCATGA 1 cut(s) 763
BspLI GGNNCC 3 cut(s) 211, 727, 997
BspMAI CTGCAG 1 cut(s) 265
BsrBI CCGCTC 1 cut(s) 814
BsrDI GCAATG 1 cut(s) 718
BsrFI RCCGGY 3 cut(s) 610, 822, 1010
BsrI ACTGG 3 cut(s) 478, 541, 1240
BssAI RCCGGY 3 cut(s) 610, 822, 1010
BssECI CCNNGG 3 cut(s) 341, 729, 1036
BssMI GATC 1 cut(s) 298
BssT1I CCWWGG 2 cut(s) 729, 1036
Bst2UI CCWGG 6 cut(s) 342, 676, 949, 993, 1361, 1379
Bst4CI ACNGT 2 cut(s) 737, 1300
Bst6I CTCTTC 1 cut(s) 1401
BstAPI GCANNNNNTGC 1 cut(s) 1356
BstBAI YACGTR 2 cut(s) 841, 895
BstC8I GCNNGC 3 cut(s) 338, 373, 612
BstDEI CTNAG 8 cut(s) 302, 459, 504, 575, 960, 1050, 1061, 1268
BstDSI CCRYGG 1 cut(s) 729
BstEII GGTNACC 1 cut(s) 1145
BstENI CCTNNNNNAGG 1 cut(s) 1035
BstF5I GGATG 6 cut(s) 301, 409, 439, 802, 1328, 1507
BstH2I RGCGCY 1 cut(s) 604
BstHHI GCGC 2 cut(s) 603, 1081
BstKTI GATC 1 cut(s) 301
BstMAI GTCTC 1 cut(s) 1046
BstMBI GATC 1 cut(s) 298
BstMWI GCNNNNNNNGC 5 cut(s) 137, 607, 717, 1356, 1467
BstNI CCWGG 6 cut(s) 342, 676, 949, 993, 1361, 1379
BstNSI RCATGY 1 cut(s) 1186
BstPI GGTNACC 1 cut(s) 1145
BstSCI CCNGG 6 cut(s) 340, 674, 947, 991, 1359, 1377
BstSFI CTRYAG 1 cut(s) 261
BstSLI GKGCMC 1 cut(s) 70
BstV1I GCAGC 2 cut(s) 210, 951
BstXI CCANNNNNNTGG 1 cut(s) 95
BsuRI GGCC 4 cut(s) 212, 873, 1030, 1224
BtgI CCRYGG 1 cut(s) 729
BtsCI GGATG 6 cut(s) 301, 409, 439, 802, 1328, 1507
BtsIMutI CAGTG 2 cut(s) 742, 1233
Cac8I GCNNGC 3 cut(s) 338, 373, 612
CciI TCATGA 1 cut(s) 763
CfoI GCGC 2 cut(s) 603, 1081
Cfr10I RCCGGY 3 cut(s) 610, 822, 1010
Cfr13I GGNCC 5 cut(s) 210, 308, 500, 631, 995
Csp6I GTAC 4 cut(s) 24, 381, 551, 1296
CviQI GTAC 4 cut(s) 24, 381, 551, 1296
DdeI CTNAG 8 cut(s) 302, 459, 504, 575, 960, 1050, 1061, 1268
DpnI GATC 1 cut(s) 300
DpnII GATC 1 cut(s) 298
EaeI YGGCCR 1 cut(s) 1222
Eam1104I CTCTTC 1 cut(s) 1401
EarI CTCTTC 1 cut(s) 1401
EciI GGCGGA 1 cut(s) 735
Eco130I CCWWGG 2 cut(s) 729, 1036
Eco147I AGGCCT 1 cut(s) 1030
Eco32I GATATC 1 cut(s) 761
Eco47I GGWCC 4 cut(s) 308, 500, 631, 995
Eco47III AGCGCT 1 cut(s) 602
Eco57I CTGAAG 2 cut(s) 435, 654
Eco88I CYCGRG 1 cut(s) 50
Eco91I GGTNACC 1 cut(s) 1145
EcoNI CCTNNNNNAGG 1 cut(s) 1035
EcoO109I RGGNCCY 2 cut(s) 210, 995
EcoO65I GGTNACC 1 cut(s) 1145
EcoRII CCWGG 6 cut(s) 340, 674, 947, 991, 1359, 1377
EcoRV GATATC 1 cut(s) 761
EcoT14I CCWWGG 2 cut(s) 729, 1036
EcoT22I ATGCAT 1 cut(s) 705
ErhI CCWWGG 2 cut(s) 729, 1036
FaqI GGGAC 1 cut(s) 1405
Fnu4HI GCNGC 2 cut(s) 224, 940
FokI GGATG 5 cut(s) 308, 396, 446, 789, 1335
Fsp4HI GCNGC 2 cut(s) 224, 940
FspBI CTAG 5 cut(s) 174, 234, 378, 774, 1118
FspI TGCGCA 1 cut(s) 1080
GlaI GCGC 2 cut(s) 602, 1080
GluI GCNGC 2 cut(s) 224, 940
GsuI CTGGAG 2 cut(s) 120, 992
HaeII RGCGCY 1 cut(s) 604
HaeIII GGCC 4 cut(s) 212, 873, 1030, 1224
HapII CCGG 4 cut(s) 611, 799, 823, 1011
HhaI GCGC 2 cut(s) 603, 1081
Hin6I GCGC 2 cut(s) 601, 1079
HinP1I GCGC 2 cut(s) 601, 1079
HincII GTYRAC 1 cut(s) 742
HindII GTYRAC 1 cut(s) 742
HpaII CCGG 4 cut(s) 611, 799, 823, 1011
HphI GGTGA 2 cut(s) 1025, 1157
Hpy166II GTNNAC 4 cut(s) 442, 742, 1231, 1406
Hpy188I TCNGA 8 cut(s) 217, 254, 305, 507, 963, 1051, 1246, 1477
Hpy188III TCNNGA 8 cut(s) 116, 329, 413, 764, 971, 1127, 1310, 1328
Hpy8I GTNNAC 4 cut(s) 442, 742, 1231, 1406
Hpy99I CGWCG 1 cut(s) 254
HpyAV CCTTC 7 cut(s) 177, 237, 270, 410, 918, 1327, 1492
HpyCH4III ACNGT 2 cut(s) 737, 1300
HpyCH4IV ACGT 2 cut(s) 840, 894
HpyF10VI GCNNNNNNNGC 5 cut(s) 137, 607, 717, 1356, 1467
HpyF3I CTNAG 8 cut(s) 302, 459, 504, 575, 960, 1050, 1061, 1268
HpySE526I ACGT 2 cut(s) 840, 894
HspAI GCGC 2 cut(s) 601, 1079
KroI GCCGGC 1 cut(s) 610
KroNI GCCGGC 1 cut(s) 612
Kzo9I GATC 1 cut(s) 298
LmnI GCTCC 5 cut(s) 18, 665, 850, 947, 1195
Lsp1109I GCAGC 2 cut(s) 210, 951
LweI GCATC 6 cut(s) 112, 297, 418, 424, 811, 835
MaeI CTAG 5 cut(s) 174, 234, 378, 774, 1118
MaeII ACGT 2 cut(s) 840, 894
MaeIII GTNAC 2 cut(s) 4, 1145
MalI GATC 1 cut(s) 300
MbiI CCGCTC 1 cut(s) 814
MboI GATC 1 cut(s) 298
MboII GAAGA 6 cut(s) 222, 878, 1325, 1388, 1396, 1507
MhlI GDGCHC 1 cut(s) 70
MlsI TGGCCA 1 cut(s) 1224
MluCI AATT 6 cut(s) 28, 238, 255, 346, 1130, 1218
MluNI TGGCCA 1 cut(s) 1224
MlyI GAGTC 3 cut(s) 255, 1050, 1387
MmeI TCCRAC 5 cut(s) 232, 522, 609, 1149, 1224
Mox20I TGGCCA 1 cut(s) 1224
Mph1103I ATGCAT 1 cut(s) 705
MroNI GCCGGC 1 cut(s) 610
MscI TGGCCA 1 cut(s) 1224
MseI TTAA 2 cut(s) 641, 1430
MslI CAYNNNNRTG 1 cut(s) 749
Msp20I TGGCCA 1 cut(s) 1224
MspI CCGG 4 cut(s) 611, 799, 823, 1011
MspR9I CCNGG 6 cut(s) 342, 676, 949, 993, 1361, 1379
Mva1269I GAATGC 1 cut(s) 338
MvaI CCWGG 6 cut(s) 342, 676, 949, 993, 1361, 1379
MwoI GCNNNNNNNGC 5 cut(s) 137, 607, 717, 1356, 1467
NaeI GCCGGC 1 cut(s) 612
NcoI CCATGG 1 cut(s) 729
NdeII GATC 1 cut(s) 298
NgoMIV GCCGGC 1 cut(s) 610
NlaIV GGNNCC 3 cut(s) 211, 727, 997
NmuCI GTSAC 1 cut(s) 1145
NsbI TGCGCA 1 cut(s) 1080
NsiI ATGCAT 1 cut(s) 705
NspI RCATGY 1 cut(s) 1186
PagI TCATGA 1 cut(s) 763
PceI AGGCCT 1 cut(s) 1030
PciI ACATGT 1 cut(s) 1182
PctI GAATGC 1 cut(s) 338
PdiI GCCGGC 1 cut(s) 612
PfeI GAWTC 9 cut(s) 202, 218, 325, 520, 545, 679, 767, 883, 952
PflFI GACNNNGTC 1 cut(s) 737
PflMI CCANNNNNTGG 1 cut(s) 1133
PkrI GCNGC 2 cut(s) 225, 941
PleI GAGTC 3 cut(s) 254, 1049, 1387
PpsI GAGTC 3 cut(s) 254, 1049, 1387
Ppu21I YACGTR 2 cut(s) 841, 895
PpuMI RGGWCCY 1 cut(s) 995
PscI ACATGT 1 cut(s) 1182
PsiI TTATAA 2 cut(s) 1304, 1371
Psp5II RGGWCCY 1 cut(s) 995
Psp6I CCWGG 6 cut(s) 340, 674, 947, 991, 1359, 1377
PspEI GGTNACC 1 cut(s) 1145
PspGI CCWGG 6 cut(s) 340, 674, 947, 991, 1359, 1377
PspN4I GGNNCC 3 cut(s) 211, 727, 997
PspPI GGNCC 5 cut(s) 210, 308, 500, 631, 995
PspPPI RGGWCCY 1 cut(s) 995
PsrI GAACNNNNNNTAC 2 cut(s) 177, 209
PstI CTGCAG 1 cut(s) 265
PsyI GACNNNGTC 1 cut(s) 737
RsaI GTAC 4 cut(s) 25, 382, 552, 1297
RsaNI GTAC 4 cut(s) 24, 381, 551, 1296
RseI CAYNNNNRTG 1 cut(s) 749
SaqAI TTAA 2 cut(s) 641, 1430
SatI GCNGC 2 cut(s) 224, 940
Sau3AI GATC 1 cut(s) 298
Sau96I GGNCC 5 cut(s) 210, 308, 500, 631, 995
ScaI AGTACT 2 cut(s) 25, 382
SchI GAGTC 3 cut(s) 255, 1050, 1387
ScrFI CCNGG 6 cut(s) 342, 676, 949, 993, 1361, 1379
SduI GDGCHC 1 cut(s) 70
SfaNI GCATC 6 cut(s) 112, 297, 418, 424, 811, 835
SfcI CTRYAG 1 cut(s) 261
SinI GGWCC 4 cut(s) 308, 500, 631, 995
SmiMI CAYNNNNRTG 1 cut(s) 749
SmlI CTYRAG 1 cut(s) 925
SmoI CTYRAG 1 cut(s) 925
Sse9I AATT 6 cut(s) 28, 238, 255, 346, 1130, 1218
SseBI AGGCCT 1 cut(s) 1030
SsiI CCGC 3 cut(s) 720, 812, 1165
SspI AATATT 1 cut(s) 356
SspMI CTAG 5 cut(s) 174, 234, 378, 774, 1118
StuI AGGCCT 1 cut(s) 1030
StyD4I CCNGG 6 cut(s) 340, 674, 947, 991, 1359, 1377
StyI CCWWGG 2 cut(s) 729, 1036
TaaI ACNGT 2 cut(s) 737, 1300
TaiI ACGT 2 cut(s) 843, 897
TasI AATT 6 cut(s) 28, 238, 255, 346, 1130, 1218
TatI WGTACW 2 cut(s) 23, 380
TfiI GAWTC 9 cut(s) 202, 218, 325, 520, 545, 679, 767, 883, 952
Tru1I TTAA 2 cut(s) 641, 1430
Tru9I TTAA 2 cut(s) 641, 1430
TscAI CASTG 2 cut(s) 742, 1240
TseFI GTSAC 1 cut(s) 1145
TseI GCWGC 2 cut(s) 223, 939
Tsp45I GTSAC 1 cut(s) 1145
TspDTI ATGAA 5 cut(s) 159, 215, 759, 900, 1388
TspGWI ACGGA 1 cut(s) 93
TspRI CASTG 2 cut(s) 742, 1240
Tth111I GACNNNGTC 1 cut(s) 737
Van91I CCANNNNNTGG 1 cut(s) 1133
VpaK11BI GGWCC 4 cut(s) 308, 500, 631, 995
XagI CCTNNNNNAGG 1 cut(s) 1035
XapI RAATTY 3 cut(s) 255, 346, 1130
XceI RCATGY 1 cut(s) 1186
XcmI CCANNNNNNNNNTGG 1 cut(s) 1232
XspI CTAG 5 cut(s) 174, 234, 378, 774, 1118
ZrmI AGTACT 2 cut(s) 25, 382
Zsp2I ATGCAT 1 cut(s) 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.