Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0007273

Physical Location & Seq

Genomic Coordinates Forward (+)

19284672 .. 19286376

Gene Structure 1705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g18290.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGCAGGGGGGTAATGTTACAGTAGGTTCTATGGACAGCGGGAACATGGGTATGCAAAGATATCATGATTCATCTAGCAATAGAAGTTCCTCTATTCTCCAGCATCCTCCTTCGCTCAGCCACCGCCATCATAATCAGCACGTAGCACCACCCATGCAAGGATTAAGAGGCCACAACCTTAATTTTAACCCCCAGGGTGCCACAGCAGCTTCATATAGATTACCTGCAAGTTCCTCGCGCAGCACCATGAATCCTTCTCAGAATGGTTTGGAGATTGGTCGTAGGCAACCAGATCGATCTATTCCCTCGAATGGCTTTAGGATATACAGGCCACACCAAGGAGTTATTCCCGAGGCAGCTTTAAGACACCAGAACCTTCCCCACTTCAGAGTTCTTCAGGCTGATGAGGGTGTCATAGTAGATGTTCCAAACTTTTATGGCAGCTTTACGGACCAGCACAGAGATATGCGGTTGGACATAGAGGACATGTCATATGAGGAGCTTCTTGCATTGGGGGAGCAGATTGGCCATGATAATTATAAGAACCGCGAGAAGATAGGATTTCTCCGCTGCGGACACGAGTATCATGCAAGTTGCTTGAAGAAGTGGTTGCTTGTGAAAAATGTCTGCCCCATCTGCAAGTCCGAAGCGTTGAACACAGGGAGGAAGAATGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

226

Amino Acids

25.27

Weight (kDa)

9.14

Isoelectric Point (pI)

50.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53190 AT1G53190 AT3G15070 AT3G15070
fragaria_vesca	FvH4_3g19090 FvH4_3g19090 FvH4_3g19090
malus_domestica	MD03G1237000.v1.1 MD11G1257600.v1.1
prunus_persica	Prupe.4G172400_v2.0.a1 Prupe.4G172400_v2.0.a1
pyrus_communis	pycom03g18280 pycom03g18290 pycom11g22740
rosa_chinensis	RchiOBHm_Chr5g0031881
rosa_laevigata	RLG00000033355
rosa_multiflora	Rmu_sc0005375.1_g000030
rosa_roxburghii	Rroxscaffold_1G00048380
rosa_rugosa	Rorug05G0128400 Rorug05G0128500
rosa_samantha	Rh5AG222700 Rh5BG222900 Rh5CG246000 Rh5DG227700
rosa_wichuraiana	Rw5G020290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	540
Acc36I	ACCTGC	1 cut(s)	232
AccB1I	GGYRCC	1 cut(s)	197
AccII	CGCG	2 cut(s)	238, 549
AciI	CCGC	6 cut(s)	39, 124, 469, 547, 568, 573
AcoI	YGGCCR	1 cut(s)	526
AcuI	CTGAAG	2 cut(s)	370, 380
AfiI	CCNNNNNNNGG	3 cut(s)	158, 311, 338
AflIII	ACRYGT	1 cut(s)	486
AgsI	TTSAA	2 cut(s)	601, 655
AjnI	CCWGG	1 cut(s)	192
AjuI	GAANNNNNNNTTGG	2 cut(s)	330, 362
AluBI	AGCT	4 cut(s)	209, 359, 444, 502
AluI	AGCT	4 cut(s)	209, 359, 444, 502
Ama87I	CYCGRG	1 cut(s)	350
AoxI	GGCC	3 cut(s)	169, 329, 526
ApeKI	GCWGC	5 cut(s)	206, 240, 356, 441, 570
AspLEI	GCGC	1 cut(s)	240
AspS9I	GGNCC	1 cut(s)	451
AvaI	CYCGRG	1 cut(s)	350
AvaII	GGWCC	1 cut(s)	451
BaeI	ACNNNNGTAYC	2 cut(s)	566, 599
BalI	TGGCCA	1 cut(s)	528
BanI	GGYRCC	1 cut(s)	197
BauI	CACGAG	1 cut(s)	578
BbvI	GCAGC	5 cut(s)	218, 252, 368, 453, 557
BccI	CCATC	2 cut(s)	135, 641
BcgI	CGANNNNNNTGC	6 cut(s)	216, 250, 275, 309, 569, 603
BciT130I	CCWGG	1 cut(s)	194
BfaI	CTAG	1 cut(s)	75
BfuAI	ACCTGC	1 cut(s)	232
BisI	GCNGC	5 cut(s)	207, 241, 357, 442, 571
BlpI	GCTNAGC	1 cut(s)	116
BlsI	GCNGC	5 cut(s)	208, 242, 358, 443, 572
Bme1390I	CCNGG	1 cut(s)	194
Bme18I	GGWCC	1 cut(s)	451
BmeT110I	CYCGRG	1 cut(s)	350
BmgT120I	GGNCC	1 cut(s)	451
BmiI	GGNNCC	1 cut(s)	199
BmrFI	CCNGG	1 cut(s)	194
BmsI	GCATC	1 cut(s)	112
BpmI	CTGGAG	1 cut(s)	83
Bpu1102I	GCTNAGC	1 cut(s)	116
Bsa29I	ATCGAT	1 cut(s)	295
BsaAI	YACGTR	1 cut(s)	142
BsaJI	CCNNGG	4 cut(s)	192, 193, 337, 351
Bsc4I	CCNNNNNNNGG	3 cut(s)	158, 311, 338
BseBI	CCWGG	1 cut(s)	194
BseCI	ATCGAT	1 cut(s)	295
BseDI	CCNNGG	4 cut(s)	192, 193, 337, 351
BseGI	GGATG	1 cut(s)	103
BseLI	CCNNNNNNNGG	3 cut(s)	158, 311, 338
BseMII	CTCAG	2 cut(s)	130, 272
BseRI	GAGGAG	1 cut(s)	512
BseXI	GCAGC	5 cut(s)	218, 252, 368, 453, 557
Bsh1236I	CGCG	2 cut(s)	238, 549
BshFI	GGCC	3 cut(s)	171, 331, 528
BshNI	GGYRCC	1 cut(s)	197
BshVI	ATCGAT	1 cut(s)	295
BsiHKCI	CYCGRG	1 cut(s)	350
BslI	CCNNNNNNNGG	3 cut(s)	158, 311, 338
BsnI	GGCC	3 cut(s)	171, 331, 528
BsoBI	CYCGRG	1 cut(s)	350
Bsp143I	GATC	2 cut(s)	292, 296
Bsp1720I	GCTNAGC	1 cut(s)	116
BspACI	CCGC	6 cut(s)	39, 124, 469, 547, 568, 573
BspANI	GGCC	3 cut(s)	171, 331, 528
BspCNI	CTCAG	2 cut(s)	129, 271
BspDI	ATCGAT	1 cut(s)	295
BspFNI	CGCG	2 cut(s)	238, 549
BspHI	TCATGA	1 cut(s)	64
BspLI	GGNNCC	1 cut(s)	199
BspMI	ACCTGC	1 cut(s)	232
BspT107I	GGYRCC	1 cut(s)	197
BssECI	CCNNGG	4 cut(s)	192, 193, 337, 351
BssMI	GATC	2 cut(s)	292, 296
BssSI	CACGAG	1 cut(s)	578
BssT1I	CCWWGG	1 cut(s)	337
Bst2BI	CACGAG	1 cut(s)	578
Bst2UI	CCWGG	1 cut(s)	194
Bst4CI	ACNGT	1 cut(s)	22
BstBAI	YACGTR	1 cut(s)	142
BstDEI	CTNAG	2 cut(s)	116, 258
BstF5I	GGATG	1 cut(s)	103
BstFNI	CGCG	2 cut(s)	238, 549
BstHHI	GCGC	1 cut(s)	240
BstKTI	GATC	2 cut(s)	295, 299
BstMBI	GATC	2 cut(s)	292, 296
BstMWI	GCNNNNNNNGC	2 cut(s)	206, 636
BstNI	CCWGG	1 cut(s)	194
BstNSI	RCATGY	1 cut(s)	490
BstSCI	CCNGG	1 cut(s)	192
BstUI	CGCG	2 cut(s)	238, 549
BstV1I	GCAGC	5 cut(s)	218, 252, 368, 453, 557
Bsu15I	ATCGAT	1 cut(s)	295
BsuRI	GGCC	3 cut(s)	171, 331, 528
BsuTUI	ATCGAT	1 cut(s)	295
BtsCI	GGATG	1 cut(s)	103
BveI	ACCTGC	1 cut(s)	232
CciI	TCATGA	1 cut(s)	64
CfoI	GCGC	1 cut(s)	240
Cfr13I	GGNCC	1 cut(s)	451
ClaI	ATCGAT	1 cut(s)	295
CviAII	CATG	7 cut(s)	46, 65, 154, 247, 487, 530, 587
DdeI	CTNAG	2 cut(s)	116, 258
DpnI	GATC	2 cut(s)	294, 298
DpnII	GATC	2 cut(s)	292, 296
EaeI	YGGCCR	1 cut(s)	526
Eco130I	CCWWGG	1 cut(s)	337
Eco32I	GATATC	1 cut(s)	62
Eco47I	GGWCC	1 cut(s)	451
Eco57I	CTGAAG	2 cut(s)	370, 380
Eco88I	CYCGRG	1 cut(s)	350
EcoRII	CCWGG	1 cut(s)	192
EcoRV	GATATC	1 cut(s)	62
EcoT14I	CCWWGG	1 cut(s)	337
ErhI	CCWWGG	1 cut(s)	337
FaeI	CATG	7 cut(s)	49, 68, 157, 250, 490, 533, 590
FatI	CATG	7 cut(s)	45, 64, 153, 246, 486, 529, 586
FauI	CCCGC	1 cut(s)	32
FauNDI	CATATG	1 cut(s)	493
Fnu4HI	GCNGC	5 cut(s)	207, 241, 357, 442, 571
FokI	GGATG	1 cut(s)	90
Fsp4HI	GCNGC	5 cut(s)	207, 241, 357, 442, 571
FspBI	CTAG	1 cut(s)	75
GlaI	GCGC	1 cut(s)	239
GluI	GCNGC	5 cut(s)	207, 241, 357, 442, 571
GsuI	CTGGAG	1 cut(s)	83
HaeIII	GGCC	3 cut(s)	171, 331, 528
HhaI	GCGC	1 cut(s)	240
Hin1II	CATG	7 cut(s)	49, 68, 157, 250, 490, 533, 590
Hin6I	GCGC	1 cut(s)	238
HinP1I	GCGC	1 cut(s)	238
HinfI	GANTC	2 cut(s)	68, 250
Hpy188I	TCNGA	3 cut(s)	261, 389, 646
Hpy188III	TCNNGA	2 cut(s)	65, 350
HpyAV	CCTTC	3 cut(s)	120, 264, 386
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	7 cut(s)	4, 55, 157, 227, 509, 590, 639
HpyF10VI	GCNNNNNNNGC	2 cut(s)	206, 636
HpyF3I	CTNAG	2 cut(s)	116, 258
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	7 cut(s)	49, 68, 157, 250, 490, 533, 590
HspAI	GCGC	1 cut(s)	238
Kzo9I	GATC	2 cut(s)	292, 296
LmnI	GCTCC	2 cut(s)	499, 517
Lsp1109I	GCAGC	5 cut(s)	218, 252, 368, 453, 557
LweI	GCATC	1 cut(s)	112
MaeI	CTAG	1 cut(s)	75
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	2 cut(s)	294, 298
MboI	GATC	2 cut(s)	292, 296
MboII	GAAGA	3 cut(s)	386, 565, 613
MlsI	TGGCCA	1 cut(s)	528
MluCI	AATT	2 cut(s)	181, 535
MluNI	TGGCCA	1 cut(s)	528
MmeI	TCCRAC	1 cut(s)	453
Mox20I	TGGCCA	1 cut(s)	528
MscI	TGGCCA	1 cut(s)	528
MseI	TTAA	4 cut(s)	164, 180, 186, 362
MslI	CAYNNNNRTG	1 cut(s)	50
Msp20I	TGGCCA	1 cut(s)	528
MspA1I	CMGCKG	2 cut(s)	39, 570
MspR9I	CCNGG	1 cut(s)	194
MvaI	CCWGG	1 cut(s)	194
MvnI	CGCG	2 cut(s)	238, 549
MwoI	GCNNNNNNNGC	2 cut(s)	206, 636
NdeI	CATATG	1 cut(s)	493
NdeII	GATC	2 cut(s)	292, 296
NlaIII	CATG	7 cut(s)	49, 68, 157, 250, 490, 533, 590
NlaIV	GGNNCC	1 cut(s)	199
NspI	RCATGY	1 cut(s)	490
PagI	TCATGA	1 cut(s)	64
PasI	CCCWGGG	1 cut(s)	193
PciI	ACATGT	1 cut(s)	486
PfeI	GAWTC	2 cut(s)	68, 250
PkrI	GCNGC	5 cut(s)	208, 242, 358, 443, 572
Ppu21I	YACGTR	1 cut(s)	142
PscI	ACATGT	1 cut(s)	486
PsiI	TTATAA	1 cut(s)	540
Psp6I	CCWGG	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	192
PspN4I	GGNNCC	1 cut(s)	199
PspPI	GGNCC	1 cut(s)	451
RseI	CAYNNNNRTG	1 cut(s)	50
SaqAI	TTAA	4 cut(s)	164, 180, 186, 362
SatI	GCNGC	5 cut(s)	207, 241, 357, 442, 571
Sau3AI	GATC	2 cut(s)	292, 296
Sau96I	GGNCC	1 cut(s)	451
ScrFI	CCNGG	1 cut(s)	194
SetI	ASST	9 cut(s)	28, 144, 180, 211, 226, 361, 378, 446, 504
SfaNI	GCATC	1 cut(s)	112
SinI	GGWCC	1 cut(s)	451
SmiMI	CAYNNNNRTG	1 cut(s)	50
Sse9I	AATT	2 cut(s)	181, 535
SsiI	CCGC	6 cut(s)	39, 124, 469, 547, 568, 573
SspMI	CTAG	1 cut(s)	75
StyD4I	CCNGG	1 cut(s)	192
StyI	CCWWGG	1 cut(s)	337
TaaI	ACNGT	1 cut(s)	22
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	2 cut(s)	295, 308
TasI	AATT	2 cut(s)	181, 535
TfiI	GAWTC	2 cut(s)	68, 250
Tru1I	TTAA	4 cut(s)	164, 180, 186, 362
Tru9I	TTAA	4 cut(s)	164, 180, 186, 362
TseI	GCWGC	5 cut(s)	206, 240, 356, 441, 570
TspDTI	ATGAA	3 cut(s)	60, 201, 263
TspGWI	ACGGA	1 cut(s)	464
VpaK11BI	GGWCC	1 cut(s)	451
XceI	RCATGY	1 cut(s)	490
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.