AT3G15518

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015239
Physical Location & Seq
Forward (+)
5249112 .. 5249754
643 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G15518.1

Sequence Viewer

Length: 321 bp
ATGCAGGTTTCGAGAAGGATCCCATCTGGTGAAGGCGTAGAGATGCCAGGAAGATCCGAGACCAACCGGATCAGACGGAGGAGCCACGGGTCAGGTCTGAGGGTTCGGGTAGCTTGCACTTGCTCAGGACGGCCTGGTTCAACGAAGTGTGCACGGCACGGGTTTGTGGTGCCAAGCGATGAGAGGCTTATGCGGAAGGCGAGTGACGGAAGCAGAGAGGTGTTGCGAAGAGCTTTGACACCTCCGATCCGGCGGATGAATCTCCGGTGGTTAAATTTCCGGCCAACACCTAGCCGTCTCTGTAAAATGTCTTCTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.99

Weight (kDa)

11.88

Isoelectric Point (pI)

91.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015239)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15518
fragaria_vesca FvH4_3g20710
malus_domestica MD03G1222500.v1.1 MD11G1239800.v1.1
prunus_persica Prupe.4G187200_v2.0.a1
pyrus_communis pycom03g17110
rosa_chinensis RchiOBHm_Chr5g0034861
rosa_laevigata RLG00000033581
rosa_multiflora Rmu_sc0002460.1_g000038
rosa_roxburghii Rroxscaffold_1G00045470
rosa_rugosa Rorug05G0148700
rosa_samantha Rh5AG241100 Rh5BG241300 Rh5CG272300 Rh5DG249800
rosa_wichuraiana Rw5G022040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 169
AciI CCGC 2 cut(s) 193, 253
AclWI GGATC 5 cut(s) 13, 26, 48, 77, 241
AcoI YGGCCR 1 cut(s) 281
AcsI RAATTY 1 cut(s) 274
AgsI TTSAA 1 cut(s) 141
AjnI CCWGG 2 cut(s) 46, 133
AluBI AGCT 2 cut(s) 113, 233
AluI AGCT 2 cut(s) 113, 233
Alw21I GWGCWC 1 cut(s) 154
Alw26I GTCTC 2 cut(s) 53, 302
Alw44I GTGCAC 1 cut(s) 150
AlwI GGATC 5 cut(s) 13, 26, 48, 77, 241
AoxI GGCC 2 cut(s) 131, 281
ApaLI GTGCAC 1 cut(s) 150
ApoI RAATTY 1 cut(s) 274
AsuHPI GGTGA 1 cut(s) 41
BaeGI GKGCMC 1 cut(s) 154
BamHI GGATCC 1 cut(s) 18
BanI GGYRCC 1 cut(s) 169
BarI GAAGNNNNNNTAC 1 cut(s) 295
BbsI GAAGAC 1 cut(s) 303
Bbv12I GWGCWC 1 cut(s) 154
BccI CCATC 1 cut(s) 31
BceAI ACGGC 3 cut(s) 146, 170, 279
BciT130I CCWGG 2 cut(s) 48, 135
BcoDI GTCTC 2 cut(s) 53, 302
BfaI CTAG 1 cut(s) 291
Bme1390I CCNGG 2 cut(s) 48, 135
BmiI GGNNCC 3 cut(s) 20, 83, 171
BmrFI CCNGG 2 cut(s) 48, 135
BmsI GCATC 1 cut(s) 33
BpiI GAAGAC 1 cut(s) 303
Bpu10I CCTNAGC 1 cut(s) 124
BsaI GGTCTC 1 cut(s) 53
BsaJI CCNNGG 1 cut(s) 85
BsaWI WCCGGW 2 cut(s) 66, 264
BseBI CCWGG 2 cut(s) 48, 135
BseDI CCNNGG 1 cut(s) 85
BseGI GGATG 1 cut(s) 261
BseMII CTCAG 2 cut(s) 89, 138
BseRI GAGGAG 1 cut(s) 94
BseSI GKGCMC 1 cut(s) 154
BshFI GGCC 2 cut(s) 133, 283
BshNI GGYRCC 1 cut(s) 169
BsiHKAI GWGCWC 1 cut(s) 154
BsiSI CCGG 4 cut(s) 67, 250, 265, 280
BsmAI GTCTC 2 cut(s) 53, 302
BsmBI CGTCTC 1 cut(s) 302
BsnI GGCC 2 cut(s) 133, 283
Bso31I GGTCTC 1 cut(s) 53
Bsp1286I GDGCHC 1 cut(s) 154
Bsp143I GATC 4 cut(s) 18, 53, 69, 246
BspACI CCGC 2 cut(s) 193, 253
BspANI GGCC 2 cut(s) 133, 283
BspCNI CTCAG 2 cut(s) 90, 137
BspLI GGNNCC 3 cut(s) 20, 83, 171
BspPI GGATC 5 cut(s) 13, 26, 48, 77, 241
BspQI GCTCTTC 1 cut(s) 223
BspT107I GGYRCC 1 cut(s) 169
BspTNI GGTCTC 1 cut(s) 53
BssECI CCNNGG 1 cut(s) 85
BssMI GATC 4 cut(s) 18, 53, 69, 246
Bst2UI CCWGG 2 cut(s) 48, 135
Bst6I CTCTTC 1 cut(s) 223
BstC8I GCNNGC 1 cut(s) 115
BstDEI CTNAG 2 cut(s) 98, 124
BstDSI CCRYGG 1 cut(s) 85
BstF5I GGATG 1 cut(s) 261
BstKTI GATC 4 cut(s) 21, 56, 72, 249
BstMAI GTCTC 2 cut(s) 53, 302
BstMBI GATC 4 cut(s) 18, 53, 69, 246
BstNI CCWGG 2 cut(s) 48, 135
BstSCI CCNGG 2 cut(s) 46, 133
BstSLI GKGCMC 1 cut(s) 154
BstV2I GAAGAC 1 cut(s) 303
BstX2I RGATCY 2 cut(s) 18, 53
BstYI RGATCY 2 cut(s) 18, 53
BsuRI GGCC 2 cut(s) 133, 283
BtgI CCRYGG 1 cut(s) 85
BtgZI GCGATG 1 cut(s) 192
BtsCI GGATG 1 cut(s) 261
Cac8I GCNNGC 1 cut(s) 115
CviJI RGCY 7 cut(s) 84, 113, 133, 187, 233, 283, 294
CviKI_1 RGCY 7 cut(s) 84, 113, 133, 187, 233, 283, 294
DdeI CTNAG 2 cut(s) 98, 124
DpnI GATC 4 cut(s) 20, 55, 71, 248
DpnII GATC 4 cut(s) 18, 53, 69, 246
EaeI YGGCCR 1 cut(s) 281
Eam1104I CTCTTC 1 cut(s) 223
EarI CTCTTC 1 cut(s) 223
EciI GGCGGA 1 cut(s) 268
Eco31I GGTCTC 1 cut(s) 53
EcoRII CCWGG 2 cut(s) 46, 133
Esp3I CGTCTC 1 cut(s) 302
FaiI YATR 1 cut(s) 191
FokI GGATG 1 cut(s) 268
FspBI CTAG 1 cut(s) 291
HaeIII GGCC 2 cut(s) 133, 283
HapII CCGG 4 cut(s) 67, 250, 265, 280
HinfI GANTC 1 cut(s) 259
HpaII CCGG 4 cut(s) 67, 250, 265, 280
HphI GGTGA 1 cut(s) 41
Hpy166II GTNNAC 1 cut(s) 152
Hpy188I TCNGA 4 cut(s) 58, 74, 99, 246
Hpy188III TCNNGA 2 cut(s) 12, 126
Hpy8I GTNNAC 1 cut(s) 152
HpyAV CCTTC 3 cut(s) 9, 26, 190
HpyCH4V TGCA 3 cut(s) 4, 117, 152
HpyF3I CTNAG 2 cut(s) 98, 124
Kzo9I GATC 4 cut(s) 18, 53, 69, 246
LguI GCTCTTC 1 cut(s) 223
LmnI GCTCC 1 cut(s) 81
LweI GCATC 1 cut(s) 33
MaeI CTAG 1 cut(s) 291
MaeIII GTNAC 1 cut(s) 203
MalI GATC 4 cut(s) 20, 55, 71, 248
MboI GATC 4 cut(s) 18, 53, 69, 246
MboII GAAGA 3 cut(s) 63, 240, 303
MflI RGATCY 2 cut(s) 18, 53
MhlI GDGCHC 1 cut(s) 154
MluCI AATT 1 cut(s) 274
MnlI CCTC 5 cut(s) 72, 93, 177, 211, 252
MseI TTAA 1 cut(s) 272
MspI CCGG 4 cut(s) 67, 250, 265, 280
MspR9I CCNGG 2 cut(s) 48, 135
MvaI CCWGG 2 cut(s) 48, 135
NdeII GATC 4 cut(s) 18, 53, 69, 246
NlaIV GGNNCC 3 cut(s) 20, 83, 171
NmuCI GTSAC 1 cut(s) 203
PciSI GCTCTTC 1 cut(s) 223
PfeI GAWTC 1 cut(s) 259
Psp6I CCWGG 2 cut(s) 46, 133
PspGI CCWGG 2 cut(s) 46, 133
PspN4I GGNNCC 3 cut(s) 20, 83, 171
PsuI RGATCY 2 cut(s) 18, 53
SapI GCTCTTC 1 cut(s) 223
SaqAI TTAA 1 cut(s) 272
Sau3AI GATC 4 cut(s) 18, 53, 69, 246
ScrFI CCNGG 2 cut(s) 48, 135
SduI GDGCHC 1 cut(s) 154
SetI ASST 7 cut(s) 9, 97, 115, 222, 235, 244, 292
SfaNI GCATC 1 cut(s) 33
Sse9I AATT 1 cut(s) 274
SsiI CCGC 2 cut(s) 193, 253
SspMI CTAG 1 cut(s) 291
StyD4I CCNGG 2 cut(s) 46, 133
TaqI TCGA 1 cut(s) 11
TasI AATT 1 cut(s) 274
TfiI GAWTC 1 cut(s) 259
Tru1I TTAA 1 cut(s) 272
Tru9I TTAA 1 cut(s) 272
TseFI GTSAC 1 cut(s) 203
Tsp45I GTSAC 1 cut(s) 203
TspDTI ATGAA 1 cut(s) 272
TspGWI ACGGA 2 cut(s) 91, 222
VneI GTGCAC 1 cut(s) 150
XapI RAATTY 1 cut(s) 274
XspI CTAG 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.