Rorug05G0148700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0015239
Physical Location & Seq
Reverse (-)
13815163 .. 13816510
1348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0148700.1

Sequence Viewer

Length: 978 bp
ATGTCTCGGTCTGCACTGGATGAGGTCTCACAATCTGGTGCATTTGTGAGAAGTGCTTCTGAATTCCGTAACTTCATTTCACGAGACCCGAATTCGCAATTTCCAGCAGAAGCTGGGAGATATCATCTTTATATATCTTATGCTTGCCCTTGGGCTTCAAGATGCCTTGCATACTTGAATATTAAAGGACTTCAGAAAGCTATCAGCTTTACGTCGGTCAAACCTATATGGGAAAGAACAAAAGAAAGTGATGAGCATATGGGATGGGTTTTTCCTGCTTCAGATAAGGAGCTAGAAGGAGCTGAACCTGACCCTTTGAATGGAGCAAAAAGTATACGAGAACTTTATGAGATTGCTAGTACAAAATACAGTGGAAAGTACACTGTTCCGGTTCTATGGGATAAAAAACTTGGAACAATTGTCAGTAATGAGAGTTCGGAGATTATTCGCATGTTTAATACTGAATTCAACAGTATAGCAGAGAACCCGGCTTTGGACTTGTATCCCGATCACTTGCAATCCCAAGTCAATCAGACTAATGAATGGATATACGACAAGATAAATAACGGTGTCTATAAATGTGGGTTTGCCAAGAAGCAGGAGCCTTACGATGAGGCTGTGAAACAGTTGTATGAAGCTTTGGACAGATGTGAAGAGATACTTAGCAAGCAACGATACCTCTGTGGAAACACATTATCTGAAGCAGATATTCGTTTGTTTGTGACTCTCATAAGATTTGATGAGGTTTATGCAGTCCACTTCAAGTGCAACAAGAAACTCCTGCGAGAGTACCCAAATCTGTTTAACTACACCAAGGACATTTTCCAAGTTCCTGGAATGAGCAGCACAGTCCAGATGGATCACATCAAACGACACTACTATGGAAGCCATCCTTCTATCAATCCTTTCGGGATAGTTCCTTCCGGCCCAAACATCGACTACTCTTCTCCTCATGACAGAAACAAGTTTTCTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

325

Amino Acids

37.29

Weight (kDa)

6.27

Isoelectric Point (pI)

48.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_N_2 PF13409 48 - 154 3.6e-10 Glutathione S-transferase, N-terminal domain
GST_C PF00043 196 - 276 1.9e-09 Glutathione S-transferase, C-terminal domain
GST_C_2 PF13410 202 - 271 1.6e-14 Glutathione S-transferase, C-terminal domain
GST_C_3 PF14497 205 - 279 3e-07 Glutathione S-transferase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015239)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15518
fragaria_vesca FvH4_3g20710
malus_domestica MD03G1222500.v1.1 MD11G1239800.v1.1
prunus_persica Prupe.4G187200_v2.0.a1
pyrus_communis pycom03g17110
rosa_chinensis RchiOBHm_Chr5g0034861
rosa_laevigata RLG00000033581
rosa_multiflora Rmu_sc0002460.1_g000038
rosa_roxburghii Rroxscaffold_1G00045470
rosa_rugosa Rorug05G0148700
rosa_samantha Rh5AG241100 Rh5BG241300 Rh5CG272300 Rh5DG249800
rosa_wichuraiana Rw5G022040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 334
AclWI GGATC 1 cut(s) 867
AcsI RAATTY 3 cut(s) 62, 91, 464
AcuI CTGAAG 3 cut(s) 176, 264, 720
AfaI GTAC 3 cut(s) 361, 380, 791
AfiI CCNNNNNNNGG 2 cut(s) 320, 493
AgsI TTSAA 5 cut(s) 159, 178, 319, 469, 763
AjnI CCWGG 1 cut(s) 832
AjuI GAANNNNNNNTTGG 4 cut(s) 476, 508, 806, 838
AluBI AGCT 6 cut(s) 113, 200, 207, 292, 302, 638
AluI AGCT 6 cut(s) 113, 200, 207, 292, 302, 638
Alw26I GTCTC 3 cut(s) 9, 31, 78
AlwI GGATC 1 cut(s) 867
AlwNI CAGNNNCTG 1 cut(s) 113
AoxI GGCC 1 cut(s) 925
ApeKI GCWGC 1 cut(s) 843
ApoI RAATTY 3 cut(s) 62, 91, 464
Asp700I GAANNNNTTC 1 cut(s) 55
AspS9I GGNCC 1 cut(s) 926
AsuC2I CCSGG 1 cut(s) 488
BaeI ACNNNNGTAYC 2 cut(s) 667, 700
BauI CACGAG 1 cut(s) 81
BbvI GCAGC 1 cut(s) 855
BccI CCATC 3 cut(s) 258, 850, 897
BciT130I CCWGG 1 cut(s) 834
BciVI GTATCC 1 cut(s) 513
BcnI CCSGG 1 cut(s) 488
BcoDI GTCTC 3 cut(s) 9, 31, 78
BfaI CTAG 2 cut(s) 293, 357
BfuI GTATCC 1 cut(s) 513
BisI GCNGC 1 cut(s) 844
BlsI GCNGC 1 cut(s) 845
Bme1390I CCNGG 2 cut(s) 488, 834
BmgT120I GGNCC 1 cut(s) 926
BmiI GGNNCC 1 cut(s) 603
BmrFI CCNGG 2 cut(s) 488, 834
BmsI GCATC 1 cut(s) 152
BpuMI CCSGG 1 cut(s) 488
BsaI GGTCTC 2 cut(s) 31, 78
BsaJI CCNNGG 2 cut(s) 149, 813
BsaWI WCCGGW 1 cut(s) 388
Bsc4I CCNNNNNNNGG 2 cut(s) 320, 493
Bse1I ACTGG 1 cut(s) 21
BseBI CCWGG 1 cut(s) 834
BseDI CCNNGG 2 cut(s) 149, 813
BseGI GGATG 3 cut(s) 25, 269, 889
BseLI CCNNNNNNNGG 2 cut(s) 320, 493
BseNI ACTGG 1 cut(s) 21
BseRI GAGGAG 1 cut(s) 939
BseXI GCAGC 1 cut(s) 855
BseYI CCCAGC 1 cut(s) 113
BshFI GGCC 1 cut(s) 927
BsiSI CCGG 3 cut(s) 389, 488, 924
BslI CCNNNNNNNGG 2 cut(s) 320, 493
BsmAI GTCTC 3 cut(s) 9, 31, 78
BsnI GGCC 1 cut(s) 927
Bso31I GGTCTC 2 cut(s) 31, 78
Bsp143I GATC 2 cut(s) 508, 859
BspANI GGCC 1 cut(s) 927
BspHI TCATGA 1 cut(s) 952
BspLI GGNNCC 1 cut(s) 603
BspPI GGATC 1 cut(s) 867
BspTNI GGTCTC 2 cut(s) 31, 78
BsrI ACTGG 1 cut(s) 21
BssECI CCNNGG 2 cut(s) 149, 813
BssMI GATC 2 cut(s) 508, 859
BssNAI GTATAC 1 cut(s) 335
BssSI CACGAG 1 cut(s) 81
BssT1I CCWWGG 2 cut(s) 149, 813
Bst1107I GTATAC 1 cut(s) 335
Bst2BI CACGAG 1 cut(s) 81
Bst2UI CCWGG 1 cut(s) 834
Bst4CI ACNGT 6 cut(s) 371, 385, 473, 569, 627, 850
Bst6I CTCTTC 2 cut(s) 648, 949
BstC8I GCNNGC 2 cut(s) 145, 668
BstDEI CTNAG 1 cut(s) 662
BstF5I GGATG 3 cut(s) 25, 269, 889
BstKTI GATC 2 cut(s) 511, 862
BstMAI GTCTC 3 cut(s) 9, 31, 78
BstMBI GATC 2 cut(s) 508, 859
BstNI CCWGG 1 cut(s) 834
BstNSI RCATGY 1 cut(s) 454
BstSCI CCNGG 2 cut(s) 486, 832
BstV1I GCAGC 1 cut(s) 855
BstXI CCANNNNNNTGG 1 cut(s) 833
BstZ17I GTATAC 1 cut(s) 335
BsuI GTATCC 1 cut(s) 513
BsuRI GGCC 1 cut(s) 927
BtsCI GGATG 3 cut(s) 25, 269, 889
BtsIMutI CAGTG 3 cut(s) 14, 376, 381
Cac8I GCNNGC 2 cut(s) 145, 668
CaiI CAGNNNCTG 1 cut(s) 113
CciI TCATGA 1 cut(s) 952
Cfr13I GGNCC 1 cut(s) 926
Csp6I GTAC 3 cut(s) 360, 379, 790
CviAII CATG 2 cut(s) 451, 953
CviQI GTAC 3 cut(s) 360, 379, 790
DdeI CTNAG 1 cut(s) 662
DpnI GATC 2 cut(s) 510, 861
DpnII GATC 2 cut(s) 508, 859
Eam1104I CTCTTC 2 cut(s) 648, 949
EarI CTCTTC 2 cut(s) 648, 949
Eco130I CCWWGG 2 cut(s) 149, 813
Eco31I GGTCTC 2 cut(s) 31, 78
Eco32I GATATC 1 cut(s) 122
Eco57I CTGAAG 3 cut(s) 176, 264, 720
EcoRI GAATTC 3 cut(s) 62, 91, 464
EcoRII CCWGG 1 cut(s) 832
EcoRV GATATC 1 cut(s) 122
EcoT14I CCWWGG 2 cut(s) 149, 813
ErhI CCWWGG 2 cut(s) 149, 813
FaeI CATG 2 cut(s) 454, 956
FalI AAGNNNNNCTT 4 cut(s) 645, 677, 877, 909
FatI CATG 2 cut(s) 450, 952
FauNDI CATATG 1 cut(s) 258
FblI GTMKAC 1 cut(s) 334
Fnu4HI GCNGC 1 cut(s) 844
FokI GGATG 3 cut(s) 32, 276, 876
Fsp4HI GCNGC 1 cut(s) 844
FspBI CTAG 2 cut(s) 293, 357
GluI GCNGC 1 cut(s) 844
GsaI CCCAGC 1 cut(s) 117
HaeIII GGCC 1 cut(s) 927
HapII CCGG 3 cut(s) 389, 488, 924
Hin1II CATG 2 cut(s) 454, 956
HindIII AAGCTT 1 cut(s) 636
HinfI GANTC 1 cut(s) 724
HpaII CCGG 3 cut(s) 389, 488, 924
Hpy166II GTNNAC 3 cut(s) 335, 381, 757
Hpy188I TCNGA 6 cut(s) 61, 195, 283, 439, 534, 700
Hpy188III TCNNGA 6 cut(s) 81, 159, 506, 853, 910, 953
Hpy8I GTNNAC 3 cut(s) 335, 381, 757
Hpy99I CGWCG 1 cut(s) 217
HpyAV CCTTC 3 cut(s) 290, 903, 930
HpyCH4III ACNGT 6 cut(s) 371, 385, 473, 569, 627, 850
HpyCH4IV ACGT 1 cut(s) 212
HpyCH4V TGCA 7 cut(s) 14, 41, 170, 517, 752, 768, 974
HpyF3I CTNAG 1 cut(s) 662
HpySE526I ACGT 1 cut(s) 212
Hsp92II CATG 2 cut(s) 454, 956
Kzo9I GATC 2 cut(s) 508, 859
LmnI GCTCC 4 cut(s) 289, 299, 323, 601
Lsp1109I GCAGC 1 cut(s) 855
LweI GCATC 1 cut(s) 152
MaeI CTAG 2 cut(s) 293, 357
MaeII ACGT 1 cut(s) 212
MaeIII GTNAC 2 cut(s) 68, 721
MalI GATC 2 cut(s) 510, 861
MboI GATC 2 cut(s) 508, 859
MboII GAAGA 2 cut(s) 665, 936
MfeI CAATTG 1 cut(s) 417
MluCI AATT 5 cut(s) 62, 91, 98, 417, 464
MlyI GAGTC 1 cut(s) 718
MnlI CCTC 5 cut(s) 16, 607, 689, 736, 960
MroXI GAANNNNTTC 1 cut(s) 55
MseI TTAA 3 cut(s) 183, 456, 804
MslI CAYNNNNRTG 1 cut(s) 879
MspI CCGG 3 cut(s) 389, 488, 924
MspR9I CCNGG 2 cut(s) 488, 834
MunI CAATTG 1 cut(s) 417
MvaI CCWGG 1 cut(s) 834
NciI CCSGG 1 cut(s) 488
NdeI CATATG 1 cut(s) 258
NdeII GATC 2 cut(s) 508, 859
NlaIII CATG 2 cut(s) 454, 956
NlaIV GGNNCC 1 cut(s) 603
NmuCI GTSAC 1 cut(s) 721
NspI RCATGY 1 cut(s) 454
PagI TCATGA 1 cut(s) 952
PdmI GAANNNNTTC 1 cut(s) 55
PfoI TCCNGGA 1 cut(s) 832
PkrI GCNGC 1 cut(s) 845
PleI GAGTC 1 cut(s) 718
PpsI GAGTC 1 cut(s) 718
Psp6I CCWGG 1 cut(s) 832
PspFI CCCAGC 1 cut(s) 113
PspGI CCWGG 1 cut(s) 832
PspN4I GGNNCC 1 cut(s) 603
PspPI GGNCC 1 cut(s) 926
PsrI GAACNNNNNNTAC 2 cut(s) 418, 450
PstNI CAGNNNCTG 1 cut(s) 113
RsaI GTAC 3 cut(s) 361, 380, 791
RsaNI GTAC 3 cut(s) 360, 379, 790
RseI CAYNNNNRTG 1 cut(s) 879
SaqAI TTAA 3 cut(s) 183, 456, 804
SatI GCNGC 1 cut(s) 844
Sau3AI GATC 2 cut(s) 508, 859
Sau96I GGNCC 1 cut(s) 926
SchI GAGTC 1 cut(s) 718
ScrFI CCNGG 2 cut(s) 488, 834
SfaNI GCATC 1 cut(s) 152
SmiMI CAYNNNNRTG 1 cut(s) 879
Sse9I AATT 5 cut(s) 62, 91, 98, 417, 464
SspI AATATT 1 cut(s) 181
SspMI CTAG 2 cut(s) 293, 357
StyD4I CCNGG 2 cut(s) 486, 832
StyI CCWWGG 2 cut(s) 149, 813
TaaI ACNGT 6 cut(s) 371, 385, 473, 569, 627, 850
TaiI ACGT 1 cut(s) 215
TaqI TCGA 1 cut(s) 936
TaqII GACCGA 1 cut(s) 205
TasI AATT 5 cut(s) 62, 91, 98, 417, 464
TatI WGTACW 2 cut(s) 359, 378
Tru1I TTAA 3 cut(s) 183, 456, 804
Tru9I TTAA 3 cut(s) 183, 456, 804
TscAI CASTG 3 cut(s) 21, 376, 388
TseFI GTSAC 1 cut(s) 721
TseI GCWGC 1 cut(s) 843
Tsp45I GTSAC 1 cut(s) 721
TspDTI ATGAA 3 cut(s) 64, 555, 648
TspGWI ACGGA 1 cut(s) 56
TspRI CASTG 3 cut(s) 21, 376, 388
XapI RAATTY 3 cut(s) 62, 91, 464
XceI RCATGY 1 cut(s) 454
XmiI GTMKAC 1 cut(s) 334
XmnI GAANNNNTTC 1 cut(s) 55
XspI CTAG 2 cut(s) 293, 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.