Prupe.4G187200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0015239
Physical Location & Seq
Forward (+)
11145857 .. 11146604
748 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G187200.1

Sequence Viewer

Length: 351 bp
ATGCAAAGGAGCTCTCACCACTACAAACATAACATTGGAGAAAGGCTACAGACTCTCAGTGTACATTGCAAGACAGAGGGAACAAATCGTGGTCTTAGGCACAGTTGTATGGCCTCCTCATCATCCCCTAGGCCTCGAGTGCAGGCATGCACCTGCACGAATCGTCCCGGGTTGAATCGCTGTAGCCGGCACGGGTATGCAGTGCCGGGGGCTGAGAAGTGGAGGAGGAACTATGCAAACAAGGAGGTTTTAAGGAGGGCGTTGAGATCTACACCAAACCGAAGCTTAAGTCTTCGGTGGTGGAATTTCCAACCAACGCCTAGTCGGCTCTCTAACATGTCTATGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.36

Weight (kDa)

11.52

Isoelectric Point (pI)

101.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015239)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15518
fragaria_vesca FvH4_3g20710
malus_domestica MD03G1222500.v1.1 MD11G1239800.v1.1
prunus_persica Prupe.4G187200_v2.0.a1
pyrus_communis pycom03g17110
rosa_chinensis RchiOBHm_Chr5g0034861
rosa_laevigata RLG00000033581
rosa_multiflora Rmu_sc0002460.1_g000038
rosa_roxburghii Rroxscaffold_1G00045470
rosa_rugosa Rorug05G0148700
rosa_samantha Rh5AG241100 Rh5BG241300 Rh5CG272300 Rh5DG249800
rosa_wichuraiana Rw5G022040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 161
Acc36I ACCTGC 1 cut(s) 161
AcsI RAATTY 1 cut(s) 304
AfaI GTAC 1 cut(s) 63
AflII CTTAAG 1 cut(s) 286
AflIII ACRYGT 1 cut(s) 336
AgsI TTSAA 1 cut(s) 175
AluBI AGCT 2 cut(s) 12, 285
AluI AGCT 2 cut(s) 12, 285
Alw21I GWGCWC 1 cut(s) 14
Ama87I CYCGRG 2 cut(s) 135, 167
AoxI GGCC 2 cut(s) 111, 131
ApoI RAATTY 1 cut(s) 304
ArsI GACNNNNNNTTYG 2 cut(s) 274, 306
AspA2I CCTAGG 1 cut(s) 128
AsuC2I CCSGG 3 cut(s) 168, 169, 207
AsuHPI GGTGA 1 cut(s) 8
AvaI CYCGRG 2 cut(s) 135, 167
AvrII CCTAGG 1 cut(s) 128
BanII GRGCYC 1 cut(s) 14
BbsI GAAGAC 1 cut(s) 284
Bbv12I GWGCWC 1 cut(s) 14
BcnI CCSGG 3 cut(s) 168, 169, 207
BfaI CTAG 2 cut(s) 129, 321
BfmI CTRYAG 2 cut(s) 47, 181
BfrI CTTAAG 1 cut(s) 286
BfuAI ACCTGC 1 cut(s) 161
BglI GCCNNNNNGGC 1 cut(s) 325
BglII AGATCT 1 cut(s) 266
BlnI CCTAGG 1 cut(s) 128
Bme1390I CCNGG 3 cut(s) 168, 169, 207
BmeT110I CYCGRG 2 cut(s) 135, 167
BmrFI CCNGG 3 cut(s) 168, 169, 207
BpiI GAAGAC 1 cut(s) 284
BpuMI CCSGG 3 cut(s) 168, 169, 207
BsaJI CCNNGG 3 cut(s) 128, 167, 206
Bse118I RCCGGY 1 cut(s) 186
Bse3DI GCAATG 1 cut(s) 64
BseDI CCNNGG 3 cut(s) 128, 167, 206
BseGI GGATG 1 cut(s) 122
BseMI GCAATG 1 cut(s) 64
BseMII CTCAG 2 cut(s) 70, 204
BseRI GAGGAG 2 cut(s) 106, 238
BsgI GTGCAG 2 cut(s) 139, 161
BshFI GGCC 2 cut(s) 113, 133
BsiHKAI GWGCWC 1 cut(s) 14
BsiHKCI CYCGRG 2 cut(s) 135, 167
BsiSI CCGG 3 cut(s) 168, 187, 206
BslFI GGGAC 1 cut(s) 150
BsmFI GGGAC 1 cut(s) 150
BsnI GGCC 2 cut(s) 113, 133
BsoBI CYCGRG 2 cut(s) 135, 167
Bsp1286I GDGCHC 1 cut(s) 14
Bsp1407I TGTACA 1 cut(s) 61
Bsp143I GATC 1 cut(s) 266
BspANI GGCC 2 cut(s) 113, 133
BspCNI CTCAG 2 cut(s) 69, 205
BspMI ACCTGC 1 cut(s) 161
BspTI CTTAAG 1 cut(s) 286
BsrDI GCAATG 1 cut(s) 64
BsrFI RCCGGY 1 cut(s) 186
BsrGI TGTACA 1 cut(s) 61
BssAI RCCGGY 1 cut(s) 186
BssECI CCNNGG 3 cut(s) 128, 167, 206
BssMI GATC 1 cut(s) 266
BssT1I CCWWGG 1 cut(s) 128
Bst4CI ACNGT 1 cut(s) 104
BstAFI CTTAAG 1 cut(s) 286
BstAUI TGTACA 1 cut(s) 61
BstC8I GCNNGC 3 cut(s) 144, 148, 188
BstDEI CTNAG 3 cut(s) 56, 95, 213
BstF5I GGATG 1 cut(s) 122
BstKTI GATC 1 cut(s) 269
BstMBI GATC 1 cut(s) 266
BstMWI GCNNNNNNNGC 2 cut(s) 139, 325
BstNSI RCATGY 2 cut(s) 150, 340
BstSCI CCNGG 3 cut(s) 166, 167, 205
BstSFI CTRYAG 2 cut(s) 47, 181
BstV2I GAAGAC 1 cut(s) 284
BstX2I RGATCY 1 cut(s) 266
BstYI RGATCY 1 cut(s) 266
BsuRI GGCC 2 cut(s) 113, 133
BtsCI GGATG 1 cut(s) 122
BtsI GCAGTG 1 cut(s) 207
BtsIMutI CAGTG 2 cut(s) 64, 207
BveI ACCTGC 1 cut(s) 161
Cac8I GCNNGC 3 cut(s) 144, 148, 188
Cfr10I RCCGGY 1 cut(s) 186
Cfr9I CCCGGG 1 cut(s) 167
Csp6I GTAC 1 cut(s) 62
CviAII CATG 2 cut(s) 147, 337
CviJI RGCY 9 cut(s) 12, 46, 113, 133, 186, 212, 285, 328, 347
CviKI_1 RGCY 9 cut(s) 12, 46, 113, 133, 186, 212, 285, 328, 347
CviQI GTAC 1 cut(s) 62
DdeI CTNAG 3 cut(s) 56, 95, 213
DpnI GATC 1 cut(s) 268
DpnII GATC 1 cut(s) 266
Ecl136II GAGCTC 1 cut(s) 12
Eco130I CCWWGG 1 cut(s) 128
Eco147I AGGCCT 1 cut(s) 133
Eco24I GRGCYC 1 cut(s) 14
Eco53kI GAGCTC 1 cut(s) 12
Eco88I CYCGRG 2 cut(s) 135, 167
EcoICRI GAGCTC 1 cut(s) 12
EcoT14I CCWWGG 1 cut(s) 128
EcoT38I GRGCYC 1 cut(s) 14
ErhI CCWWGG 1 cut(s) 128
FaeI CATG 2 cut(s) 150, 340
FaiI YATR 7 cut(s) 30, 110, 148, 198, 234, 338, 344
FaqI GGGAC 1 cut(s) 150
FatI CATG 2 cut(s) 146, 336
FokI GGATG 1 cut(s) 109
FriOI GRGCYC 1 cut(s) 14
FspBI CTAG 2 cut(s) 129, 321
HaeIII GGCC 2 cut(s) 113, 133
HapII CCGG 3 cut(s) 168, 187, 206
Hin1II CATG 2 cut(s) 150, 340
HindIII AAGCTT 1 cut(s) 283
HinfI GANTC 3 cut(s) 52, 160, 175
HpaII CCGG 3 cut(s) 168, 187, 206
HphI GGTGA 1 cut(s) 8
Hpy166II GTNNAC 1 cut(s) 62
Hpy8I GTNNAC 1 cut(s) 62
HpyCH4III ACNGT 1 cut(s) 104
HpyCH4V TGCA 7 cut(s) 4, 69, 142, 150, 156, 200, 236
HpyF10VI GCNNNNNNNGC 2 cut(s) 139, 325
HpyF3I CTNAG 3 cut(s) 56, 95, 213
Hsp92II CATG 2 cut(s) 150, 340
KroI GCCGGC 1 cut(s) 186
KroNI GCCGGC 1 cut(s) 188
Kzo9I GATC 1 cut(s) 266
LmnI GCTCC 1 cut(s) 9
LpnPI CCDG 5 cut(s) 128, 166, 181, 200, 219
MaeI CTAG 2 cut(s) 129, 321
MalI GATC 1 cut(s) 268
MboI GATC 1 cut(s) 266
MboII GAAGA 1 cut(s) 284
MflI RGATCY 1 cut(s) 266
MhlI GDGCHC 1 cut(s) 14
MluCI AATT 1 cut(s) 304
MlyI GAGTC 1 cut(s) 46
MmeI TCCRAC 1 cut(s) 334
MnlI CCTC 8 cut(s) 70, 124, 127, 144, 216, 219, 238, 249
MroNI GCCGGC 1 cut(s) 186
MseI TTAA 3 cut(s) 251, 287, 349
MslI CAYNNNNRTG 2 cut(s) 195, 341
MspCI CTTAAG 1 cut(s) 286
MspI CCGG 3 cut(s) 168, 187, 206
MspR9I CCNGG 3 cut(s) 168, 169, 207
MwoI GCNNNNNNNGC 2 cut(s) 139, 325
NaeI GCCGGC 1 cut(s) 188
NciI CCSGG 3 cut(s) 168, 169, 207
NdeII GATC 1 cut(s) 266
NgoMIV GCCGGC 1 cut(s) 186
NlaIII CATG 2 cut(s) 150, 340
NspI RCATGY 2 cut(s) 150, 340
PaeI GCATGC 1 cut(s) 150
PaeR7I CTCGAG 1 cut(s) 135
PaqCI CACCTGC 1 cut(s) 161
PceI AGGCCT 1 cut(s) 133
PciI ACATGT 1 cut(s) 336
PdiI GCCGGC 1 cut(s) 188
PfeI GAWTC 2 cut(s) 160, 175
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
PscI ACATGT 1 cut(s) 336
Psp124BI GAGCTC 1 cut(s) 14
PspXI VCTCGAGB 1 cut(s) 135
PsuI RGATCY 1 cut(s) 266
RsaI GTAC 1 cut(s) 63
RsaNI GTAC 1 cut(s) 62
RseI CAYNNNNRTG 2 cut(s) 195, 341
SacI GAGCTC 1 cut(s) 14
SaqAI TTAA 3 cut(s) 251, 287, 349
Sau3AI GATC 1 cut(s) 266
SchI GAGTC 1 cut(s) 46
ScrFI CCNGG 3 cut(s) 168, 169, 207
SduI GDGCHC 1 cut(s) 14
SetI ASST 4 cut(s) 14, 155, 249, 287
SfcI CTRYAG 2 cut(s) 47, 181
Sfr274I CTCGAG 1 cut(s) 135
SlaI CTCGAG 1 cut(s) 135
SmaI CCCGGG 1 cut(s) 169
SmiMI CAYNNNNRTG 2 cut(s) 195, 341
SmlI CTYRAG 2 cut(s) 135, 286
SmoI CTYRAG 2 cut(s) 135, 286
SphI GCATGC 1 cut(s) 150
Sse9I AATT 1 cut(s) 304
SseBI AGGCCT 1 cut(s) 133
SspMI CTAG 2 cut(s) 129, 321
SstI GAGCTC 1 cut(s) 14
StuI AGGCCT 1 cut(s) 133
StyD4I CCNGG 3 cut(s) 166, 167, 205
StyI CCWWGG 1 cut(s) 128
TaaI ACNGT 1 cut(s) 104
TaqI TCGA 1 cut(s) 136
TasI AATT 1 cut(s) 304
TatI WGTACW 1 cut(s) 61
TfiI GAWTC 2 cut(s) 160, 175
Tru1I TTAA 3 cut(s) 251, 287, 349
Tru9I TTAA 3 cut(s) 251, 287, 349
TscAI CASTG 2 cut(s) 64, 207
TspMI CCCGGG 1 cut(s) 167
TspRI CASTG 2 cut(s) 64, 207
Vha464I CTTAAG 1 cut(s) 286
XapI RAATTY 1 cut(s) 304
XceI RCATGY 2 cut(s) 150, 340
XhoI CTCGAG 1 cut(s) 135
XmaI CCCGGG 1 cut(s) 167
XmaJI CCTAGG 1 cut(s) 128
XspI CTAG 2 cut(s) 129, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.