FvH4_3g20710

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0015239
Physical Location & Seq
Forward (+)
13767699 .. 13768897
1199 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g20710.t1

Sequence Viewer

Length: 372 bp
ATGCAAAAGAGCTCTCATCAGTGCAGGCAAGTCGGAGAAAGGCTACAAGGGATTCCGGCAAGGCCCCCACTCAGTACCGGAAACAAGGCTGAGGGAACTAGTAACCATCGTGGTCTTAGGCACGGCTATATGGTATCGTCTCCGAGGACTAGAATGACATGTACGTGCGGCAATAGGCCTGGGTTGAACCGGTGTAACCGCCACGGGTTTGCCGTGCCCGGCGGGGAAAAGTGGAGGAGGAACTACGCAAACAAGGAGATATTGAGGAGAGCACTGAGGACTGGACAGACGCGAGGCTTAAGTCTTCGGTGGTGGAACTTTCAGCCTACTCCTAGTCGGCTATCTAACATGTCTATGGCTGAGAGTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.92

Weight (kDa)

11.71

Isoelectric Point (pI)

68.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015239)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15518
fragaria_vesca FvH4_3g20710
malus_domestica MD03G1222500.v1.1 MD11G1239800.v1.1
prunus_persica Prupe.4G187200_v2.0.a1
pyrus_communis pycom03g17110
rosa_chinensis RchiOBHm_Chr5g0034861
rosa_laevigata RLG00000033581
rosa_multiflora Rmu_sc0002460.1_g000038
rosa_roxburghii Rroxscaffold_1G00045470
rosa_rugosa Rorug05G0148700
rosa_samantha Rh5AG241100 Rh5BG241300 Rh5CG272300 Rh5DG249800
rosa_wichuraiana Rw5G022040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 292
AciI CCGC 3 cut(s) 168, 199, 222
AfaI GTAC 2 cut(s) 76, 163
AflII CTTAAG 1 cut(s) 298
AflIII ACRYGT 2 cut(s) 158, 348
AgeI ACCGGT 1 cut(s) 189
AgsI TTSAA 1 cut(s) 187
AhlI ACTAGT 1 cut(s) 98
AjnI CCWGG 1 cut(s) 178
AluBI AGCT 2 cut(s) 12, 369
AluI AGCT 2 cut(s) 12, 369
Alw21I GWGCWC 2 cut(s) 14, 274
Alw26I GTCTC 1 cut(s) 144
AoxI GGCC 2 cut(s) 62, 176
AsiGI ACCGGT 1 cut(s) 189
AspS9I GGNCC 1 cut(s) 63
AsuC2I CCSGG 1 cut(s) 219
BaeGI GKGCMC 1 cut(s) 219
BanII GRGCYC 1 cut(s) 14
BbsI GAAGAC 1 cut(s) 296
Bbv12I GWGCWC 2 cut(s) 14, 274
BbvCI CCTCAGC 1 cut(s) 90
BccI CCATC 1 cut(s) 114
BceAI ACGGC 2 cut(s) 139, 197
BcgI CGANNNNNNTGC 2 cut(s) 13, 47
BciT130I CCWGG 1 cut(s) 180
BcnI CCSGG 1 cut(s) 219
BcoDI GTCTC 1 cut(s) 144
BcuI ACTAGT 1 cut(s) 98
BfaI CTAG 4 cut(s) 99, 150, 333, 370
BfrI CTTAAG 1 cut(s) 298
BisI GCNGC 1 cut(s) 169
BlsI GCNGC 1 cut(s) 170
Bme1390I CCNGG 2 cut(s) 180, 219
BmgT120I GGNCC 1 cut(s) 63
BmiI GGNNCC 1 cut(s) 65
BmrFI CCNGG 2 cut(s) 180, 219
BpiI GAAGAC 1 cut(s) 296
Bpu10I CCTNAGC 1 cut(s) 90
BpuMI CCSGG 1 cut(s) 219
BsaAI YACGTR 1 cut(s) 165
BsaJI CCNNGG 3 cut(s) 143, 179, 202
BsaWI WCCGGW 2 cut(s) 77, 189
Bse118I RCCGGY 1 cut(s) 189
Bse1I ACTGG 1 cut(s) 286
BseBI CCWGG 1 cut(s) 180
BseDI CCNNGG 3 cut(s) 143, 179, 202
BseMII CTCAG 4 cut(s) 81, 85, 266, 351
BseNI ACTGG 1 cut(s) 286
BseRI GAGGAG 2 cut(s) 250, 280
BseSI GKGCMC 1 cut(s) 219
BsgI GTGCAG 1 cut(s) 43
Bsh1236I CGCG 1 cut(s) 292
BshFI GGCC 2 cut(s) 64, 178
BshTI ACCGGT 1 cut(s) 189
BsiHKAI GWGCWC 2 cut(s) 14, 274
BsiSI CCGG 4 cut(s) 56, 78, 190, 219
BsmAI GTCTC 1 cut(s) 144
BsmBI CGTCTC 1 cut(s) 144
BsnI GGCC 2 cut(s) 64, 178
Bsp1286I GDGCHC 3 cut(s) 14, 219, 274
BspACI CCGC 3 cut(s) 168, 199, 222
BspANI GGCC 2 cut(s) 64, 178
BspCNI CTCAG 4 cut(s) 82, 84, 267, 352
BspFNI CGCG 1 cut(s) 292
BspLI GGNNCC 1 cut(s) 65
BspTI CTTAAG 1 cut(s) 298
BsrFI RCCGGY 1 cut(s) 189
BsrI ACTGG 1 cut(s) 286
BssAI RCCGGY 1 cut(s) 189
BssECI CCNNGG 3 cut(s) 143, 179, 202
Bst2UI CCWGG 1 cut(s) 180
BstAFI CTTAAG 1 cut(s) 298
BstBAI YACGTR 1 cut(s) 165
BstC8I GCNNGC 1 cut(s) 26
BstDEI CTNAG 5 cut(s) 71, 90, 116, 275, 360
BstDSI CCRYGG 1 cut(s) 202
BstFNI CGCG 1 cut(s) 292
BstMAI GTCTC 1 cut(s) 144
BstNI CCWGG 1 cut(s) 180
BstNSI RCATGY 2 cut(s) 162, 352
BstSCI CCNGG 2 cut(s) 178, 217
BstSLI GKGCMC 1 cut(s) 219
BstUI CGCG 1 cut(s) 292
BstV2I GAAGAC 1 cut(s) 296
BsuRI GGCC 2 cut(s) 64, 178
BtgI CCRYGG 1 cut(s) 202
BtsIMutI CAGTG 2 cut(s) 26, 272
Cac8I GCNNGC 1 cut(s) 26
Cfr10I RCCGGY 1 cut(s) 189
Cfr13I GGNCC 1 cut(s) 63
CseI GACGC 1 cut(s) 298
Csp6I GTAC 2 cut(s) 75, 162
CspAI ACCGGT 1 cut(s) 189
CviAII CATG 2 cut(s) 159, 349
CviQI GTAC 2 cut(s) 75, 162
DdeI CTNAG 5 cut(s) 71, 90, 116, 275, 360
Ecl136II GAGCTC 1 cut(s) 12
Eco147I AGGCCT 1 cut(s) 178
Eco24I GRGCYC 1 cut(s) 14
Eco53kI GAGCTC 1 cut(s) 12
EcoICRI GAGCTC 1 cut(s) 12
EcoO109I RGGNCCY 1 cut(s) 63
EcoRII CCWGG 1 cut(s) 178
EcoT38I GRGCYC 1 cut(s) 14
Esp3I CGTCTC 1 cut(s) 144
FaeI CATG 2 cut(s) 162, 352
FaiI YATR 5 cut(s) 129, 131, 160, 350, 356
FatI CATG 2 cut(s) 158, 348
FauI CCCGC 1 cut(s) 215
Fnu4HI GCNGC 1 cut(s) 169
FriOI GRGCYC 1 cut(s) 14
Fsp4HI GCNGC 1 cut(s) 169
FspBI CTAG 4 cut(s) 99, 150, 333, 370
GluI GCNGC 1 cut(s) 169
HaeIII GGCC 2 cut(s) 64, 178
HapII CCGG 4 cut(s) 56, 78, 190, 219
HgaI GACGC 1 cut(s) 298
Hin1II CATG 2 cut(s) 162, 352
HinfI GANTC 1 cut(s) 52
HpaII CCGG 4 cut(s) 56, 78, 190, 219
Hpy188I TCNGA 2 cut(s) 35, 144
HpyCH4IV ACGT 1 cut(s) 164
HpyCH4V TGCA 2 cut(s) 4, 24
HpyF3I CTNAG 5 cut(s) 71, 90, 116, 275, 360
HpySE526I ACGT 1 cut(s) 164
Hsp92II CATG 2 cut(s) 162, 352
LpnPI CCDG 8 cut(s) 10, 69, 91, 165, 192, 203, 232, 267
MaeI CTAG 4 cut(s) 99, 150, 333, 370
MaeII ACGT 1 cut(s) 164
MaeIII GTNAC 2 cut(s) 101, 194
MboII GAAGA 1 cut(s) 296
MhlI GDGCHC 3 cut(s) 14, 219, 274
MmeI TCCRAC 1 cut(s) 13
MnlI CCTC 7 cut(s) 85, 138, 228, 231, 258, 270, 287
MseI TTAA 1 cut(s) 299
MslI CAYNNNNRTG 2 cut(s) 163, 353
MspCI CTTAAG 1 cut(s) 298
MspI CCGG 4 cut(s) 56, 78, 190, 219
MspR9I CCNGG 2 cut(s) 180, 219
MvaI CCWGG 1 cut(s) 180
MvnI CGCG 1 cut(s) 292
NciI CCSGG 1 cut(s) 219
NlaIII CATG 2 cut(s) 162, 352
NlaIV GGNNCC 1 cut(s) 65
NspI RCATGY 2 cut(s) 162, 352
PceI AGGCCT 1 cut(s) 178
PciI ACATGT 2 cut(s) 158, 348
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PfeI GAWTC 1 cut(s) 52
PinAI ACCGGT 1 cut(s) 189
PkrI GCNGC 1 cut(s) 170
Ppu21I YACGTR 1 cut(s) 165
PscI ACATGT 2 cut(s) 158, 348
Psp124BI GAGCTC 1 cut(s) 14
Psp6I CCWGG 1 cut(s) 178
PspGI CCWGG 1 cut(s) 178
PspN4I GGNNCC 1 cut(s) 65
PspPI GGNCC 1 cut(s) 63
RsaI GTAC 2 cut(s) 76, 163
RsaNI GTAC 2 cut(s) 75, 162
RseI CAYNNNNRTG 2 cut(s) 163, 353
SacI GAGCTC 1 cut(s) 14
SaqAI TTAA 1 cut(s) 299
SatI GCNGC 1 cut(s) 169
Sau96I GGNCC 1 cut(s) 63
ScrFI CCNGG 2 cut(s) 180, 219
SduI GDGCHC 3 cut(s) 14, 219, 274
SetI ASST 3 cut(s) 14, 167, 371
SmiMI CAYNNNNRTG 2 cut(s) 163, 353
SmlI CTYRAG 1 cut(s) 298
SmoI CTYRAG 1 cut(s) 298
SpeI ACTAGT 1 cut(s) 98
SseBI AGGCCT 1 cut(s) 178
SsiI CCGC 3 cut(s) 168, 199, 222
SspMI CTAG 4 cut(s) 99, 150, 333, 370
SstI GAGCTC 1 cut(s) 14
StuI AGGCCT 1 cut(s) 178
StyD4I CCNGG 2 cut(s) 178, 217
TaiI ACGT 1 cut(s) 167
TauI GCSGC 1 cut(s) 171
TfiI GAWTC 1 cut(s) 52
Tru1I TTAA 1 cut(s) 299
Tru9I TTAA 1 cut(s) 299
TscAI CASTG 2 cut(s) 26, 279
TspRI CASTG 2 cut(s) 26, 279
Vha464I CTTAAG 1 cut(s) 298
XceI RCATGY 2 cut(s) 162, 352
XspI CTAG 4 cut(s) 99, 150, 333, 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.