MD11G1239800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0015239
Physical Location & Seq
Reverse (-)
34845873 .. 34846196
324 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1239800.v1.1.491

Sequence Viewer

Length: 324 bp
ATGCAGAAGAACAACCCTCACTATAGTCACATTGGAGAAAGGCTACAAACACTCAACAAGAGTAGTATGGTGGCATCATCATCATCAGTATCATCCCCGAGGCCTCGAAAACAGGTTTGTACGTGCTCGAATCGTCCTGGGTTGAAAAGGTGTAGCCGGCACCAGTATGCAGTGCCGCCGGGAGGCAAAAAGGGGTTGAGGAACTATGGAAAGAAGGAGATTTTGAGGAGGGCATTGAGATCTACTCCAAATCGTAGCTTAAGTCTTCGGTGGTGGAATTTCCAACCAACGCCTAGTCGGCTTTCTAACATGTCAATGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.17

Weight (kDa)

11.68

Isoelectric Point (pI)

91.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015239)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15518
fragaria_vesca FvH4_3g20710
malus_domestica MD03G1222500.v1.1 MD11G1239800.v1.1
prunus_persica Prupe.4G187200_v2.0.a1
pyrus_communis pycom03g17110
rosa_chinensis RchiOBHm_Chr5g0034861
rosa_laevigata RLG00000033581
rosa_multiflora Rmu_sc0002460.1_g000038
rosa_roxburghii Rroxscaffold_1G00045470
rosa_rugosa Rorug05G0148700
rosa_samantha Rh5AG241100 Rh5BG241300 Rh5CG272300 Rh5DG249800
rosa_wichuraiana Rw5G022040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 159
AciI CCGC 1 cut(s) 176
AcsI RAATTY 1 cut(s) 277
AfaI GTAC 1 cut(s) 121
AfiI CCNNNNNNNGG 1 cut(s) 182
AflII CTTAAG 1 cut(s) 259
AflIII ACRYGT 1 cut(s) 309
AgsI TTSAA 1 cut(s) 145
AjnI CCWGG 1 cut(s) 136
AluBI AGCT 1 cut(s) 258
AluI AGCT 1 cut(s) 258
Alw21I GWGCWC 1 cut(s) 128
Ama87I CYCGRG 1 cut(s) 97
AoxI GGCC 1 cut(s) 101
ApoI RAATTY 1 cut(s) 277
AsuC2I CCSGG 1 cut(s) 180
AvaI CYCGRG 1 cut(s) 97
BanI GGYRCC 1 cut(s) 159
BbsI GAAGAC 1 cut(s) 257
Bbv12I GWGCWC 1 cut(s) 128
BciT130I CCWGG 1 cut(s) 138
BcnI CCSGG 1 cut(s) 180
BfaI CTAG 1 cut(s) 294
BfmI CTRYAG 1 cut(s) 22
BfrI CTTAAG 1 cut(s) 259
BglI GCCNNNNNGGC 1 cut(s) 298
BglII AGATCT 1 cut(s) 239
BisI GCNGC 1 cut(s) 176
BlsI GCNGC 1 cut(s) 177
Bme1390I CCNGG 2 cut(s) 138, 180
BmeT110I CYCGRG 1 cut(s) 97
BmiI GGNNCC 1 cut(s) 161
BmrFI CCNGG 2 cut(s) 138, 180
BmsI GCATC 1 cut(s) 83
BpiI GAAGAC 1 cut(s) 257
BplI GAGNNNNNCTC 2 cut(s) 229, 261
BpuMI CCSGG 1 cut(s) 180
BsaAI YACGTR 1 cut(s) 123
BsaJI CCNNGG 2 cut(s) 98, 137
Bsc4I CCNNNNNNNGG 1 cut(s) 182
Bse118I RCCGGY 1 cut(s) 156
Bse1I ACTGG 1 cut(s) 163
BseBI CCWGG 1 cut(s) 138
BseDI CCNNGG 2 cut(s) 98, 137
BseGI GGATG 1 cut(s) 92
BseLI CCNNNNNNNGG 1 cut(s) 182
BseNI ACTGG 1 cut(s) 163
BseRI GAGGAG 1 cut(s) 241
BshFI GGCC 1 cut(s) 103
BshNI GGYRCC 1 cut(s) 159
BsiHKAI GWGCWC 1 cut(s) 128
BsiHKCI CYCGRG 1 cut(s) 97
BsiSI CCGG 2 cut(s) 157, 179
BslI CCNNNNNNNGG 1 cut(s) 182
BsnI GGCC 1 cut(s) 103
BsoBI CYCGRG 1 cut(s) 97
Bsp1286I GDGCHC 1 cut(s) 128
Bsp143I GATC 1 cut(s) 239
BspACI CCGC 1 cut(s) 176
BspANI GGCC 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 161
BspT107I GGYRCC 1 cut(s) 159
BspTI CTTAAG 1 cut(s) 259
BsrFI RCCGGY 1 cut(s) 156
BsrI ACTGG 1 cut(s) 163
BssAI RCCGGY 1 cut(s) 156
BssECI CCNNGG 2 cut(s) 98, 137
BssMI GATC 1 cut(s) 239
Bst2UI CCWGG 1 cut(s) 138
BstAFI CTTAAG 1 cut(s) 259
BstBAI YACGTR 1 cut(s) 123
BstC8I GCNNGC 1 cut(s) 158
BstF5I GGATG 1 cut(s) 92
BstKTI GATC 1 cut(s) 242
BstMBI GATC 1 cut(s) 239
BstMWI GCNNNNNNNGC 1 cut(s) 298
BstNI CCWGG 1 cut(s) 138
BstNSI RCATGY 1 cut(s) 313
BstSCI CCNGG 2 cut(s) 136, 178
BstSFI CTRYAG 1 cut(s) 22
BstV2I GAAGAC 1 cut(s) 257
BstX2I RGATCY 1 cut(s) 239
BstYI RGATCY 1 cut(s) 239
BsuRI GGCC 1 cut(s) 103
BtsCI GGATG 1 cut(s) 92
BtsI GCAGTG 1 cut(s) 177
BtsIMutI CAGTG 1 cut(s) 177
Cac8I GCNNGC 1 cut(s) 158
Cfr10I RCCGGY 1 cut(s) 156
Csp6I GTAC 1 cut(s) 120
CviAII CATG 1 cut(s) 310
CviJI RGCY 6 cut(s) 43, 103, 156, 258, 301, 320
CviKI_1 RGCY 6 cut(s) 43, 103, 156, 258, 301, 320
CviQI GTAC 1 cut(s) 120
DpnI GATC 1 cut(s) 241
DpnII GATC 1 cut(s) 239
Eco147I AGGCCT 1 cut(s) 103
Eco88I CYCGRG 1 cut(s) 97
EcoRII CCWGG 1 cut(s) 136
FaeI CATG 1 cut(s) 313
FaiI YATR 5 cut(s) 24, 68, 168, 207, 311
FatI CATG 1 cut(s) 309
Fnu4HI GCNGC 1 cut(s) 176
FokI GGATG 1 cut(s) 79
Fsp4HI GCNGC 1 cut(s) 176
FspBI CTAG 1 cut(s) 294
GluI GCNGC 1 cut(s) 176
HaeIII GGCC 1 cut(s) 103
HapII CCGG 2 cut(s) 157, 179
Hin1II CATG 1 cut(s) 313
HinfI GANTC 1 cut(s) 130
HpaII CCGG 2 cut(s) 157, 179
HpyAV CCTTC 1 cut(s) 208
HpyCH4IV ACGT 1 cut(s) 122
HpyCH4V TGCA 2 cut(s) 4, 170
HpyF10VI GCNNNNNNNGC 1 cut(s) 298
HpySE526I ACGT 1 cut(s) 122
Hsp92II CATG 1 cut(s) 313
KroI GCCGGC 1 cut(s) 156
KroNI GCCGGC 1 cut(s) 158
Kzo9I GATC 1 cut(s) 239
LpnPI CCDG 6 cut(s) 98, 123, 150, 170, 176, 192
LweI GCATC 1 cut(s) 83
MaeI CTAG 1 cut(s) 294
MaeII ACGT 1 cut(s) 122
MaeIII GTNAC 1 cut(s) 26
MalI GATC 1 cut(s) 241
MboI GATC 1 cut(s) 239
MboII GAAGA 2 cut(s) 19, 257
MflI RGATCY 1 cut(s) 239
MhlI GDGCHC 1 cut(s) 128
MluCI AATT 1 cut(s) 277
MmeI TCCRAC 1 cut(s) 307
MnlI CCTC 7 cut(s) 27, 93, 114, 176, 192, 219, 222
MroNI GCCGGC 1 cut(s) 156
MseI TTAA 2 cut(s) 260, 322
MslI CAYNNNNRTG 2 cut(s) 165, 314
MspCI CTTAAG 1 cut(s) 259
MspI CCGG 2 cut(s) 157, 179
MspR9I CCNGG 2 cut(s) 138, 180
MvaI CCWGG 1 cut(s) 138
MwoI GCNNNNNNNGC 1 cut(s) 298
NaeI GCCGGC 1 cut(s) 158
NciI CCSGG 1 cut(s) 180
NdeII GATC 1 cut(s) 239
NgoMIV GCCGGC 1 cut(s) 156
NlaIII CATG 1 cut(s) 313
NlaIV GGNNCC 1 cut(s) 161
NmuCI GTSAC 1 cut(s) 26
NspI RCATGY 1 cut(s) 313
PceI AGGCCT 1 cut(s) 103
PciI ACATGT 1 cut(s) 309
PdiI GCCGGC 1 cut(s) 158
PfeI GAWTC 1 cut(s) 130
PkrI GCNGC 1 cut(s) 177
Ppu21I YACGTR 1 cut(s) 123
PscI ACATGT 1 cut(s) 309
Psp6I CCWGG 1 cut(s) 136
PspGI CCWGG 1 cut(s) 136
PspN4I GGNNCC 1 cut(s) 161
PsuI RGATCY 1 cut(s) 239
RsaI GTAC 1 cut(s) 121
RsaNI GTAC 1 cut(s) 120
RseI CAYNNNNRTG 2 cut(s) 165, 314
SaqAI TTAA 2 cut(s) 260, 322
SatI GCNGC 1 cut(s) 176
Sau3AI GATC 1 cut(s) 239
ScrFI CCNGG 2 cut(s) 138, 180
SduI GDGCHC 1 cut(s) 128
SetI ASST 4 cut(s) 117, 125, 152, 260
SfaNI GCATC 1 cut(s) 83
SfcI CTRYAG 1 cut(s) 22
SmiMI CAYNNNNRTG 2 cut(s) 165, 314
SmlI CTYRAG 1 cut(s) 259
SmoI CTYRAG 1 cut(s) 259
Sse9I AATT 1 cut(s) 277
SseBI AGGCCT 1 cut(s) 103
SsiI CCGC 1 cut(s) 176
SspMI CTAG 1 cut(s) 294
StuI AGGCCT 1 cut(s) 103
StyD4I CCNGG 2 cut(s) 136, 178
TaiI ACGT 1 cut(s) 125
TaqI TCGA 2 cut(s) 106, 128
TasI AATT 1 cut(s) 277
TauI GCSGC 1 cut(s) 178
TfiI GAWTC 1 cut(s) 130
Tru1I TTAA 2 cut(s) 260, 322
Tru9I TTAA 2 cut(s) 260, 322
TscAI CASTG 1 cut(s) 177
TseFI GTSAC 1 cut(s) 26
Tsp45I GTSAC 1 cut(s) 26
TspRI CASTG 1 cut(s) 177
Vha464I CTTAAG 1 cut(s) 259
XapI RAATTY 1 cut(s) 277
XceI RCATGY 1 cut(s) 313
XspI CTAG 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.