Rroxscaffold_1G00045470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0015239
Physical Location & Seq
Reverse (-)
64454814 .. 64455188
375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00045470.1

Sequence Viewer

Length: 375 bp
ATGCAAAAGAACTCTCATCACTACAAGCAAGTTGGAGAAAGGCTACAAGGGATTCCGGCAAGGCCGCCACTCGGTACCGGAAACAAGGCTGAGGGAATTAGTAACTATCGTGGTCTTAGGCACGGTTATATGGTATCGTCTCCGAGGACCAGACTGGCGTGTACGTGCGGGAATAGGCCTGGGTTGAACCGGTGTAACCACCACGGGTTTGCCGTGCCCGGCGGGGAAAAATGGAGGAAAAACTATGCAAACAAGGAGATATTGAGGAGAGCACTTAGGAGTACTGCACCGGCTCGAGGCTTAAGTCTTCGGTGGTGGAACTTTCAACCTACCCCTAGCCGGCTCTCTAACATGTCTATGGCTGAGAGGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

14.01

Weight (kDa)

11.43

Isoelectric Point (pI)

73.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015239)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15518
fragaria_vesca FvH4_3g20710
malus_domestica MD03G1222500.v1.1 MD11G1239800.v1.1
prunus_persica Prupe.4G187200_v2.0.a1
pyrus_communis pycom03g17110
rosa_chinensis RchiOBHm_Chr5g0034861
rosa_laevigata RLG00000033581
rosa_multiflora Rmu_sc0002460.1_g000038
rosa_roxburghii Rroxscaffold_1G00045470
rosa_rugosa Rorug05G0148700
rosa_samantha Rh5AG241100 Rh5BG241300 Rh5CG272300 Rh5DG249800
rosa_wichuraiana Rw5G022040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 74
AccB1I GGYRCC 1 cut(s) 74
AciI CCGC 3 cut(s) 65, 168, 222
AfaI GTAC 3 cut(s) 76, 163, 283
AfiI CCNNNNNNNGG 3 cut(s) 71, 296, 339
AflII CTTAAG 1 cut(s) 301
AflIII ACRYGT 1 cut(s) 351
AgeI ACCGGT 1 cut(s) 189
AgsI TTSAA 2 cut(s) 187, 326
AjnI CCWGG 1 cut(s) 178
AluBI AGCT 1 cut(s) 372
AluI AGCT 1 cut(s) 372
Alw21I GWGCWC 1 cut(s) 274
Alw26I GTCTC 1 cut(s) 144
Ama87I CYCGRG 1 cut(s) 294
AoxI GGCC 2 cut(s) 62, 176
AsiGI ACCGGT 1 cut(s) 189
Asp718I GGTACC 1 cut(s) 74
AspS9I GGNCC 1 cut(s) 147
AsuC2I CCSGG 1 cut(s) 219
AvaI CYCGRG 1 cut(s) 294
AvaII GGWCC 1 cut(s) 147
BaeGI GKGCMC 1 cut(s) 219
BanI GGYRCC 1 cut(s) 74
BbsI GAAGAC 1 cut(s) 299
Bbv12I GWGCWC 1 cut(s) 274
BbvCI CCTCAGC 1 cut(s) 90
BceAI ACGGC 1 cut(s) 197
BciT130I CCWGG 1 cut(s) 180
BcnI CCSGG 1 cut(s) 219
BcoDI GTCTC 1 cut(s) 144
BfaI CTAG 2 cut(s) 336, 373
BfrI CTTAAG 1 cut(s) 301
BisI GCNGC 1 cut(s) 65
BlsI GCNGC 1 cut(s) 66
BmcAI AGTACT 1 cut(s) 283
Bme1390I CCNGG 2 cut(s) 180, 219
Bme18I GGWCC 1 cut(s) 147
BmeT110I CYCGRG 1 cut(s) 294
BmgT120I GGNCC 1 cut(s) 147
BmiI GGNNCC 1 cut(s) 76
BmrFI CCNGG 2 cut(s) 180, 219
BpiI GAAGAC 1 cut(s) 299
Bpu10I CCTNAGC 1 cut(s) 90
BpuMI CCSGG 1 cut(s) 219
BsaAI YACGTR 1 cut(s) 165
BsaJI CCNNGG 3 cut(s) 143, 179, 202
BsaWI WCCGGW 2 cut(s) 77, 189
Bsc4I CCNNNNNNNGG 3 cut(s) 71, 296, 339
Bse118I RCCGGY 3 cut(s) 189, 289, 339
Bse1I ACTGG 1 cut(s) 159
BseBI CCWGG 1 cut(s) 180
BseDI CCNNGG 3 cut(s) 143, 179, 202
BseLI CCNNNNNNNGG 3 cut(s) 71, 296, 339
BseMII CTCAG 2 cut(s) 81, 354
BseNI ACTGG 1 cut(s) 159
BseRI GAGGAG 1 cut(s) 280
BseSI GKGCMC 1 cut(s) 219
BsgI GTGCAG 1 cut(s) 270
BshFI GGCC 2 cut(s) 64, 178
BshNI GGYRCC 1 cut(s) 74
BshTI ACCGGT 1 cut(s) 189
BsiHKAI GWGCWC 1 cut(s) 274
BsiHKCI CYCGRG 1 cut(s) 294
BsiSI CCGG 6 cut(s) 56, 78, 190, 219, 290, 340
BslI CCNNNNNNNGG 3 cut(s) 71, 296, 339
BsmAI GTCTC 1 cut(s) 144
BsmBI CGTCTC 1 cut(s) 144
BsnI GGCC 2 cut(s) 64, 178
BsoBI CYCGRG 1 cut(s) 294
Bsp1286I GDGCHC 2 cut(s) 219, 274
BspACI CCGC 3 cut(s) 65, 168, 222
BspANI GGCC 2 cut(s) 64, 178
BspCNI CTCAG 2 cut(s) 82, 355
BspLI GGNNCC 1 cut(s) 76
BspT107I GGYRCC 1 cut(s) 74
BspTI CTTAAG 1 cut(s) 301
BsrFI RCCGGY 3 cut(s) 189, 289, 339
BsrI ACTGG 1 cut(s) 159
BssAI RCCGGY 3 cut(s) 189, 289, 339
BssECI CCNNGG 3 cut(s) 143, 179, 202
Bst2UI CCWGG 1 cut(s) 180
Bst4CI ACNGT 1 cut(s) 125
BstAFI CTTAAG 1 cut(s) 301
BstBAI YACGTR 1 cut(s) 165
BstC8I GCNNGC 1 cut(s) 341
BstDEI CTNAG 4 cut(s) 90, 116, 275, 363
BstDSI CCRYGG 1 cut(s) 202
BstMAI GTCTC 1 cut(s) 144
BstNI CCWGG 1 cut(s) 180
BstNSI RCATGY 1 cut(s) 355
BstSCI CCNGG 2 cut(s) 178, 217
BstSLI GKGCMC 1 cut(s) 219
BstV2I GAAGAC 1 cut(s) 299
BsuRI GGCC 2 cut(s) 64, 178
BtgI CCRYGG 1 cut(s) 202
Cac8I GCNNGC 1 cut(s) 341
Cfr10I RCCGGY 3 cut(s) 189, 289, 339
Cfr13I GGNCC 1 cut(s) 147
Csp6I GTAC 3 cut(s) 75, 162, 282
CspAI ACCGGT 1 cut(s) 189
CviAII CATG 1 cut(s) 352
CviQI GTAC 3 cut(s) 75, 162, 282
DdeI CTNAG 4 cut(s) 90, 116, 275, 363
Eco147I AGGCCT 1 cut(s) 178
Eco47I GGWCC 1 cut(s) 147
Eco88I CYCGRG 1 cut(s) 294
EcoRII CCWGG 1 cut(s) 178
Esp3I CGTCTC 1 cut(s) 144
FaeI CATG 1 cut(s) 355
FaiI YATR 5 cut(s) 129, 131, 246, 353, 359
FatI CATG 1 cut(s) 351
FauI CCCGC 2 cut(s) 161, 215
Fnu4HI GCNGC 1 cut(s) 65
Fsp4HI GCNGC 1 cut(s) 65
FspBI CTAG 2 cut(s) 336, 373
GluI GCNGC 1 cut(s) 65
HaeIII GGCC 2 cut(s) 64, 178
HapII CCGG 6 cut(s) 56, 78, 190, 219, 290, 340
Hin1II CATG 1 cut(s) 355
HinfI GANTC 1 cut(s) 52
HpaII CCGG 6 cut(s) 56, 78, 190, 219, 290, 340
Hpy166II GTNNAC 1 cut(s) 162
Hpy188I TCNGA 1 cut(s) 144
Hpy8I GTNNAC 1 cut(s) 162
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4IV ACGT 1 cut(s) 164
HpyCH4V TGCA 3 cut(s) 4, 248, 287
HpyF3I CTNAG 4 cut(s) 90, 116, 275, 363
HpySE526I ACGT 1 cut(s) 164
Hsp92II CATG 1 cut(s) 355
KpnI GGTACC 1 cut(s) 78
KroI GCCGGC 1 cut(s) 339
KroNI GCCGGC 1 cut(s) 341
LmnI GCTCC 1 cut(s) 369
MaeI CTAG 2 cut(s) 336, 373
MaeII ACGT 1 cut(s) 164
MaeIII GTNAC 2 cut(s) 101, 194
MboII GAAGA 1 cut(s) 299
MhlI GDGCHC 2 cut(s) 219, 274
MluCI AATT 1 cut(s) 96
MmeI TCCRAC 1 cut(s) 13
MnlI CCTC 6 cut(s) 85, 138, 228, 258, 290, 360
MroNI GCCGGC 1 cut(s) 339
MseI TTAA 1 cut(s) 302
MslI CAYNNNNRTG 1 cut(s) 356
MspCI CTTAAG 1 cut(s) 301
MspI CCGG 6 cut(s) 56, 78, 190, 219, 290, 340
MspR9I CCNGG 2 cut(s) 180, 219
MvaI CCWGG 1 cut(s) 180
NaeI GCCGGC 1 cut(s) 341
NciI CCSGG 1 cut(s) 219
NgoMIV GCCGGC 1 cut(s) 339
NlaIII CATG 1 cut(s) 355
NlaIV GGNNCC 1 cut(s) 76
NspI RCATGY 1 cut(s) 355
PaeR7I CTCGAG 1 cut(s) 294
PceI AGGCCT 1 cut(s) 178
PciI ACATGT 1 cut(s) 351
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PdiI GCCGGC 1 cut(s) 341
PfeI GAWTC 1 cut(s) 52
PinAI ACCGGT 1 cut(s) 189
PkrI GCNGC 1 cut(s) 66
Ppu21I YACGTR 1 cut(s) 165
PscI ACATGT 1 cut(s) 351
Psp6I CCWGG 1 cut(s) 178
PspGI CCWGG 1 cut(s) 178
PspN4I GGNNCC 1 cut(s) 76
PspPI GGNCC 1 cut(s) 147
PspXI VCTCGAGB 1 cut(s) 294
RsaI GTAC 3 cut(s) 76, 163, 283
RsaNI GTAC 3 cut(s) 75, 162, 282
RseI CAYNNNNRTG 1 cut(s) 356
SaqAI TTAA 1 cut(s) 302
SatI GCNGC 1 cut(s) 65
Sau96I GGNCC 1 cut(s) 147
ScaI AGTACT 1 cut(s) 283
ScrFI CCNGG 2 cut(s) 180, 219
SduI GDGCHC 2 cut(s) 219, 274
SetI ASST 3 cut(s) 167, 331, 374
Sfr274I CTCGAG 1 cut(s) 294
SinI GGWCC 1 cut(s) 147
SlaI CTCGAG 1 cut(s) 294
SmiMI CAYNNNNRTG 1 cut(s) 356
SmlI CTYRAG 2 cut(s) 294, 301
SmoI CTYRAG 2 cut(s) 294, 301
Sse9I AATT 1 cut(s) 96
SseBI AGGCCT 1 cut(s) 178
SsiI CCGC 3 cut(s) 65, 168, 222
SspMI CTAG 2 cut(s) 336, 373
StuI AGGCCT 1 cut(s) 178
StyD4I CCNGG 2 cut(s) 178, 217
TaaI ACNGT 1 cut(s) 125
TaiI ACGT 1 cut(s) 167
TaqI TCGA 1 cut(s) 295
TasI AATT 1 cut(s) 96
TatI WGTACW 1 cut(s) 281
TauI GCSGC 1 cut(s) 67
TfiI GAWTC 1 cut(s) 52
Tru1I TTAA 1 cut(s) 302
Tru9I TTAA 1 cut(s) 302
Vha464I CTTAAG 1 cut(s) 301
VpaK11BI GGWCC 1 cut(s) 147
XceI RCATGY 1 cut(s) 355
XhoI CTCGAG 1 cut(s) 294
XspI CTAG 2 cut(s) 336, 373
ZrmI AGTACT 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.