Rw5G022040

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0015239
Physical Location & Seq
Forward (+)
30181984 .. 30183317
1334 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G022040.1

Sequence Viewer

Length: 372 bp
ATGCAAAAGAACTCTCATCACTACAAGCAAGTTGGAGAAAGGATACAAGGGATTCCGGCAAGGCCGCCACTCAGTACTGGAAACAAGGCTGAGGGGATTAGTAACCATCGTGGTCTTAGGCACGGTTATATGGTATCGTCTCCGAGGACCAGACTGGCGTGTACGTGCGGGAATAGGCCTGGGTTGAACCGGTGTAACCGCCATGGTTTTGCCGTGCCCGGCGGGGAAAAATGGAGGAAAAACTATGCAAACAAGGAGATATTGAGGAGAGCACTTAGGACTGCACCGGCTCAAGGCTTAAGTCTTCGGTGGTGGAACTTTCAACCTACCCCTAGTCGGCTCTCTAACATGTCTATGGCTGAGAGGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.92

Weight (kDa)

11.56

Isoelectric Point (pI)

72.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015239)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15518
fragaria_vesca FvH4_3g20710
malus_domestica MD03G1222500.v1.1 MD11G1239800.v1.1
prunus_persica Prupe.4G187200_v2.0.a1
pyrus_communis pycom03g17110
rosa_chinensis RchiOBHm_Chr5g0034861
rosa_laevigata RLG00000033581
rosa_multiflora Rmu_sc0002460.1_g000038
rosa_roxburghii Rroxscaffold_1G00045470
rosa_rugosa Rorug05G0148700
rosa_samantha Rh5AG241100 Rh5BG241300 Rh5CG272300 Rh5DG249800
rosa_wichuraiana Rw5G022040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 65, 168, 199, 222
AfaI GTAC 2 cut(s) 76, 163
AfiI CCNNNNNNNGG 2 cut(s) 293, 336
AflII CTTAAG 1 cut(s) 298
AflIII ACRYGT 1 cut(s) 348
AgeI ACCGGT 1 cut(s) 189
AgsI TTSAA 2 cut(s) 187, 323
AjnI CCWGG 1 cut(s) 178
AluBI AGCT 1 cut(s) 369
AluI AGCT 1 cut(s) 369
Alw21I GWGCWC 1 cut(s) 274
Alw26I GTCTC 1 cut(s) 144
AoxI GGCC 2 cut(s) 62, 176
AsiGI ACCGGT 1 cut(s) 189
AspS9I GGNCC 1 cut(s) 147
AsuC2I CCSGG 1 cut(s) 219
AvaII GGWCC 1 cut(s) 147
BaeGI GKGCMC 1 cut(s) 219
BbsI GAAGAC 1 cut(s) 296
Bbv12I GWGCWC 1 cut(s) 274
BbvCI CCTCAGC 1 cut(s) 90
BccI CCATC 1 cut(s) 114
BceAI ACGGC 1 cut(s) 197
BciT130I CCWGG 1 cut(s) 180
BciVI GTATCC 1 cut(s) 36
BcnI CCSGG 1 cut(s) 219
BcoDI GTCTC 1 cut(s) 144
BfaI CTAG 2 cut(s) 333, 370
BfrI CTTAAG 1 cut(s) 298
BfuI GTATCC 1 cut(s) 36
BisI GCNGC 1 cut(s) 65
BlsI GCNGC 1 cut(s) 66
BmcAI AGTACT 1 cut(s) 76
Bme1390I CCNGG 2 cut(s) 180, 219
Bme18I GGWCC 1 cut(s) 147
BmgT120I GGNCC 1 cut(s) 147
BmrFI CCNGG 2 cut(s) 180, 219
BpiI GAAGAC 1 cut(s) 296
Bpu10I CCTNAGC 1 cut(s) 90
BpuEI CTTGAG 1 cut(s) 276
BpuMI CCSGG 1 cut(s) 219
BsaAI YACGTR 1 cut(s) 165
BsaJI CCNNGG 3 cut(s) 143, 179, 202
BsaWI WCCGGW 1 cut(s) 189
Bsc4I CCNNNNNNNGG 2 cut(s) 293, 336
Bse118I RCCGGY 2 cut(s) 189, 286
Bse1I ACTGG 2 cut(s) 82, 159
BseBI CCWGG 1 cut(s) 180
BseDI CCNNGG 3 cut(s) 143, 179, 202
BseLI CCNNNNNNNGG 2 cut(s) 293, 336
BseMII CTCAG 3 cut(s) 81, 85, 351
BseNI ACTGG 2 cut(s) 82, 159
BseRI GAGGAG 1 cut(s) 280
BseSI GKGCMC 1 cut(s) 219
BsgI GTGCAG 1 cut(s) 267
BshFI GGCC 2 cut(s) 64, 178
BshTI ACCGGT 1 cut(s) 189
BsiHKAI GWGCWC 1 cut(s) 274
BsiSI CCGG 4 cut(s) 56, 190, 219, 287
BslI CCNNNNNNNGG 2 cut(s) 293, 336
BsmAI GTCTC 1 cut(s) 144
BsmBI CGTCTC 1 cut(s) 144
BsnI GGCC 2 cut(s) 64, 178
Bsp1286I GDGCHC 2 cut(s) 219, 274
Bsp19I CCATGG 1 cut(s) 202
BspACI CCGC 4 cut(s) 65, 168, 199, 222
BspANI GGCC 2 cut(s) 64, 178
BspCNI CTCAG 3 cut(s) 82, 84, 352
BspTI CTTAAG 1 cut(s) 298
BsrFI RCCGGY 2 cut(s) 189, 286
BsrI ACTGG 2 cut(s) 82, 159
BssAI RCCGGY 2 cut(s) 189, 286
BssECI CCNNGG 3 cut(s) 143, 179, 202
BssT1I CCWWGG 1 cut(s) 202
Bst2UI CCWGG 1 cut(s) 180
Bst4CI ACNGT 1 cut(s) 125
BstAFI CTTAAG 1 cut(s) 298
BstBAI YACGTR 1 cut(s) 165
BstDEI CTNAG 5 cut(s) 71, 90, 116, 275, 360
BstDSI CCRYGG 1 cut(s) 202
BstMAI GTCTC 1 cut(s) 144
BstNI CCWGG 1 cut(s) 180
BstNSI RCATGY 1 cut(s) 352
BstSCI CCNGG 2 cut(s) 178, 217
BstSLI GKGCMC 1 cut(s) 219
BstV2I GAAGAC 1 cut(s) 296
BsuI GTATCC 1 cut(s) 36
BsuRI GGCC 2 cut(s) 64, 178
BtgI CCRYGG 1 cut(s) 202
Cfr10I RCCGGY 2 cut(s) 189, 286
Cfr13I GGNCC 1 cut(s) 147
Csp6I GTAC 2 cut(s) 75, 162
CspAI ACCGGT 1 cut(s) 189
CviAII CATG 2 cut(s) 203, 349
CviJI RGCY 8 cut(s) 64, 89, 178, 290, 297, 340, 359, 369
CviKI_1 RGCY 8 cut(s) 64, 89, 178, 290, 297, 340, 359, 369
CviQI GTAC 2 cut(s) 75, 162
DdeI CTNAG 5 cut(s) 71, 90, 116, 275, 360
Eco130I CCWWGG 1 cut(s) 202
Eco147I AGGCCT 1 cut(s) 178
Eco47I GGWCC 1 cut(s) 147
EcoRII CCWGG 1 cut(s) 178
EcoT14I CCWWGG 1 cut(s) 202
ErhI CCWWGG 1 cut(s) 202
Esp3I CGTCTC 1 cut(s) 144
FaeI CATG 2 cut(s) 206, 352
FaiI YATR 6 cut(s) 129, 131, 204, 246, 350, 356
FatI CATG 2 cut(s) 202, 348
FauI CCCGC 2 cut(s) 161, 215
Fnu4HI GCNGC 1 cut(s) 65
Fsp4HI GCNGC 1 cut(s) 65
FspBI CTAG 2 cut(s) 333, 370
GluI GCNGC 1 cut(s) 65
HaeIII GGCC 2 cut(s) 64, 178
HapII CCGG 4 cut(s) 56, 190, 219, 287
Hin1II CATG 2 cut(s) 206, 352
HinfI GANTC 1 cut(s) 52
HpaII CCGG 4 cut(s) 56, 190, 219, 287
Hpy166II GTNNAC 1 cut(s) 162
Hpy188I TCNGA 1 cut(s) 144
Hpy8I GTNNAC 1 cut(s) 162
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4IV ACGT 1 cut(s) 164
HpyCH4V TGCA 3 cut(s) 4, 248, 284
HpyF3I CTNAG 5 cut(s) 71, 90, 116, 275, 360
HpySE526I ACGT 1 cut(s) 164
Hsp92II CATG 2 cut(s) 206, 352
LmnI GCTCC 1 cut(s) 366
LpnPI CCDG 9 cut(s) 63, 69, 140, 163, 165, 192, 203, 232, 300
MaeI CTAG 2 cut(s) 333, 370
MaeII ACGT 1 cut(s) 164
MaeIII GTNAC 2 cut(s) 101, 194
MboII GAAGA 1 cut(s) 296
MhlI GDGCHC 2 cut(s) 219, 274
MmeI TCCRAC 1 cut(s) 13
MnlI CCTC 5 cut(s) 85, 138, 228, 258, 357
MseI TTAA 1 cut(s) 299
MslI CAYNNNNRTG 1 cut(s) 353
MspCI CTTAAG 1 cut(s) 298
MspI CCGG 4 cut(s) 56, 190, 219, 287
MspR9I CCNGG 2 cut(s) 180, 219
MvaI CCWGG 1 cut(s) 180
NciI CCSGG 1 cut(s) 219
NcoI CCATGG 1 cut(s) 202
NlaIII CATG 2 cut(s) 206, 352
NspI RCATGY 1 cut(s) 352
PceI AGGCCT 1 cut(s) 178
PciI ACATGT 1 cut(s) 348
PfeI GAWTC 1 cut(s) 52
PinAI ACCGGT 1 cut(s) 189
PkrI GCNGC 1 cut(s) 66
Ppu21I YACGTR 1 cut(s) 165
PscI ACATGT 1 cut(s) 348
Psp6I CCWGG 1 cut(s) 178
PspGI CCWGG 1 cut(s) 178
PspPI GGNCC 1 cut(s) 147
RsaI GTAC 2 cut(s) 76, 163
RsaNI GTAC 2 cut(s) 75, 162
RseI CAYNNNNRTG 1 cut(s) 353
SaqAI TTAA 1 cut(s) 299
SatI GCNGC 1 cut(s) 65
Sau96I GGNCC 1 cut(s) 147
ScaI AGTACT 1 cut(s) 76
ScrFI CCNGG 2 cut(s) 180, 219
SduI GDGCHC 2 cut(s) 219, 274
SetI ASST 3 cut(s) 167, 328, 371
SinI GGWCC 1 cut(s) 147
SmiMI CAYNNNNRTG 1 cut(s) 353
SmlI CTYRAG 2 cut(s) 291, 298
SmoI CTYRAG 2 cut(s) 291, 298
SseBI AGGCCT 1 cut(s) 178
SsiI CCGC 4 cut(s) 65, 168, 199, 222
SspMI CTAG 2 cut(s) 333, 370
StuI AGGCCT 1 cut(s) 178
StyD4I CCNGG 2 cut(s) 178, 217
StyI CCWWGG 1 cut(s) 202
TaaI ACNGT 1 cut(s) 125
TaiI ACGT 1 cut(s) 167
TatI WGTACW 1 cut(s) 74
TauI GCSGC 1 cut(s) 67
TfiI GAWTC 1 cut(s) 52
Tru1I TTAA 1 cut(s) 299
Tru9I TTAA 1 cut(s) 299
Vha464I CTTAAG 1 cut(s) 298
VpaK11BI GGWCC 1 cut(s) 147
XceI RCATGY 1 cut(s) 352
XspI CTAG 2 cut(s) 333, 370
ZrmI AGTACT 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.