AT3G15530

ubiE/COQ5 methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009982
Physical Location & Seq
Reverse (-)
5252699 .. 5254562
1864 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G15530.1

Sequence Viewer

Length: 867 bp
ATGGGTAAAACCACCGGGAACAGAGATTGGACTCAGATCTACGCTATTTACGGAATCGAACAATGGCAGACACTCGTCTTCCTTCTCTTCCATGCTTTCTTCTTCTCTCTTCTCTCTCTTCTCTTCCTCATCTACTTCGATCAGATTTGCTTCTTCCTCGATTCCTTCTTCCTCTCCGGCGCCGCCAGATTAGCCGCGGGTTTCACCGGTGCTGTAACCGCTCTCTCCGCGGTTTGTCTACTCTTCGCCGCAGCTAATTTCGTTTACTCAGATGTTCCGCTTCAGTACGAGATGGCTCAACGCATGGTTAGCTCCGTCGGTGACTGGTCTTGTGTCAAAACTGCTCTCGATCTCGGTTGTGGCCGTGGTATCCTCCTCAATGCCGTCGCTACACAGCTTAAGAAAACCGGTAGCTCCGGTCGGGTCGTCGGGTTAGACCGCTCTAAACGCACCACTCTCTCCACTCTCCGCACCGCTAAACTCGAAGGTGTGCAAGAGTATGTGACATGCCGTGAAGGAGATGTGAAGACGTTGCCGTTTGGCGATAATTACTTCGACGTGGTGGTCTCGTCGGTGTTCGTTCACACGGTGGGGAAAGAGCATGGTCAGAAGTCGGTGGAAGCTGCGGCGGAGAGAATGAGAGTGCTCGGAGAGATTGTGAGAGTTGTGAAGCCAGGAGGTTTGTGTGTGGTTTGGGATCTCTTACACGTGCCGGAGTACGTGCGTCGTCTTCAAGAGCTAAAGATGGAAGATATACGAGTCTCGGAGCGAGTCACGGCGTTTATGGCCGGAAGTCACATCGTTTCGTTCCGGAAACCCAGTGAACTCGTCGCCGGGCCCCGTGAAGTCCGCCTCGATTGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

288

Amino Acids

32.09

Weight (kDa)

8.71

Isoelectric Point (pI)

26.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ubie_methyltran PF01209 113 - 234 3.5e-06 ubiE/COQ5 methyltransferase family
Methyltransf_31 PF13847 114 - 237 1.3e-14 Methyltransferase domain
Methyltransf_11 PF08241 116 - 231 6.2e-17 Methyltransferase domain
Methyltransf_25 PF13649 116 - 227 4.2e-13 Methyltransferase domain
Methyltransf_12 PF08242 116 - 228 1.2e-07 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009982)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15530 AT3G15530 AT5G54400
fragaria_vesca FvH4_3g20760 FvH4_3g20760
malus_domestica MD03G1221800.v1.1 MD11G1239200.v1.1
prunus_persica Prupe.4G187700_v2.0.a1 Prupe.4G187700_v2.0.a1
pyrus_communis pycom03g17060 pycom11g21090
rosa_chinensis RchiOBHm_Chr5g0034991
rosa_laevigata RLG00000033590
rosa_multiflora Rmu_sc0000879.1_g000037
rosa_roxburghii Rroxscaffold_1G00045400
rosa_rugosa Rorug05G0149300
rosa_samantha Rh5AG242300 Rh5BG241900 Rh5CG273400 Rh5DG250500
rosa_wichuraiana Rw5G022130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 563
AccB1I GGYRCC 1 cut(s) 179
AccBSI CCGCTC 2 cut(s) 221, 441
AccI GTMKAC 1 cut(s) 238
AccII CGCG 2 cut(s) 197, 230
AccIII TCCGGA 1 cut(s) 810
AclWI GGATC 1 cut(s) 705
AcoI YGGCCR 2 cut(s) 361, 786
AcuI CTGAAG 1 cut(s) 266
AcvI CACGTG 1 cut(s) 709
AcyI GRCGYC 1 cut(s) 180
AdeI CACNNNGTG 1 cut(s) 589
AfaI GTAC 2 cut(s) 287, 719
AflII CTTAAG 1 cut(s) 398
AflIII ACRYGT 1 cut(s) 706
AgeI ACCGGT 2 cut(s) 206, 407
AgsI TTSAA 1 cut(s) 734
AjiI CACGTC 1 cut(s) 559
AjnI CCWGG 1 cut(s) 673
AluBI AGCT 6 cut(s) 254, 312, 397, 414, 623, 739
AluI AGCT 6 cut(s) 254, 312, 397, 414, 623, 739
Alw21I GWGCWC 1 cut(s) 648
Alw26I GTCTC 2 cut(s) 571, 766
AlwI GGATC 1 cut(s) 705
Aor13HI TCCGGA 1 cut(s) 810
AoxI GGCC 3 cut(s) 361, 786, 836
ApaI GGGCCC 1 cut(s) 840
ApeKI GCWGC 2 cut(s) 251, 623
AsiGI ACCGGT 2 cut(s) 206, 407
AspLEI GCGC 1 cut(s) 182
AspS9I GGNCC 2 cut(s) 836, 837
AsuC2I CCSGG 2 cut(s) 16, 835
AsuHPI GGTGA 2 cut(s) 196, 332
BaeGI GKGCMC 1 cut(s) 840
BanI GGYRCC 1 cut(s) 179
BanII GRGCYC 1 cut(s) 840
BbrPI CACGTG 1 cut(s) 709
BbsI GAAGAC 3 cut(s) 70, 533, 722
Bbv12I GWGCWC 1 cut(s) 648
BbvI GCAGC 2 cut(s) 263, 610
BccI CCATC 2 cut(s) 286, 739
BceAI ACGGC 5 cut(s) 348, 368, 495, 520, 792
BciT130I CCWGG 1 cut(s) 675
BciVI GTATCC 1 cut(s) 380
BcnI CCSGG 2 cut(s) 16, 835
BcoDI GTCTC 2 cut(s) 571, 766
BfoI RGCGCY 1 cut(s) 183
BfrI CTTAAG 1 cut(s) 398
BfuI GTATCC 1 cut(s) 380
BglII AGATCT 1 cut(s) 36
BisI GCNGC 6 cut(s) 183, 195, 249, 252, 624, 627
BlsI GCNGC 6 cut(s) 184, 196, 250, 253, 625, 628
Bme1390I CCNGG 3 cut(s) 16, 675, 835
BmgBI CACGTC 1 cut(s) 559
BmgT120I GGNCC 2 cut(s) 836, 837
BmiI GGNNCC 3 cut(s) 181, 838, 839
BmrFI CCNGG 3 cut(s) 16, 675, 835
BmrI ACTGGG 1 cut(s) 813
BmuI ACTGGG 1 cut(s) 813
BoxI GACNNNNGTC 1 cut(s) 74
BpiI GAAGAC 3 cut(s) 70, 533, 722
BpuMI CCSGG 2 cut(s) 16, 835
BsaAI YACGTR 2 cut(s) 709, 721
BsaHI GRCGYC 1 cut(s) 180
BsaI GGTCTC 1 cut(s) 571
BsaJI CCNNGG 3 cut(s) 195, 228, 364
BsaWI WCCGGW 4 cut(s) 206, 407, 416, 810
BsaXI ACNNNNNCTCC 2 cut(s) 642, 672
Bse118I RCCGGY 2 cut(s) 206, 407
Bse1I ACTGG 2 cut(s) 329, 819
BseAI TCCGGA 1 cut(s) 810
BseBI CCWGG 1 cut(s) 675
BseDI CCNNGG 3 cut(s) 195, 228, 364
BseMII CTCAG 2 cut(s) 47, 282
BseNI ACTGG 2 cut(s) 329, 819
BseRI GAGGAG 1 cut(s) 365
BseSI GKGCMC 1 cut(s) 840
BseXI GCAGC 2 cut(s) 263, 610
Bsh1236I CGCG 2 cut(s) 197, 230
Bsh1285I CGRYCG 1 cut(s) 421
BshFI GGCC 3 cut(s) 363, 788, 838
BshNI GGYRCC 1 cut(s) 179
BshTI ACCGGT 2 cut(s) 206, 407
BsiEI CGRYCG 1 cut(s) 421
BsiHKAI GWGCWC 1 cut(s) 648
BsiSI CCGG 9 cut(s) 15, 177, 207, 408, 417, 713, 789, 811, 834
BsmAI GTCTC 2 cut(s) 571, 766
BsnI GGCC 3 cut(s) 363, 788, 838
Bso31I GGTCTC 1 cut(s) 571
Bsp120I GGGCCC 1 cut(s) 836
Bsp1286I GDGCHC 2 cut(s) 648, 840
Bsp13I TCCGGA 1 cut(s) 810
Bsp143I GATC 4 cut(s) 36, 139, 349, 697
BspANI GGCC 3 cut(s) 363, 788, 838
BspCNI CTCAG 2 cut(s) 46, 281
BspEI TCCGGA 1 cut(s) 810
BspFNI CGCG 2 cut(s) 197, 230
BspLI GGNNCC 3 cut(s) 181, 838, 839
BspPI GGATC 1 cut(s) 705
BspT107I GGYRCC 1 cut(s) 179
BspTI CTTAAG 1 cut(s) 398
BspTNI GGTCTC 1 cut(s) 571
BsrBI CCGCTC 2 cut(s) 221, 441
BsrFI RCCGGY 2 cut(s) 206, 407
BsrI ACTGG 2 cut(s) 329, 819
BssAI RCCGGY 2 cut(s) 206, 407
BssECI CCNNGG 3 cut(s) 195, 228, 364
BssMI GATC 4 cut(s) 36, 139, 349, 697
BssNI GRCGYC 1 cut(s) 180
Bst2UI CCWGG 1 cut(s) 675
Bst4CI ACNGT 1 cut(s) 589
Bst6I CTCTTC 5 cut(s) 92, 114, 123, 128, 248
BstACI GRCGYC 1 cut(s) 180
BstAFI CTTAAG 1 cut(s) 398
BstBAI YACGTR 2 cut(s) 709, 721
BstDEI CTNAG 2 cut(s) 33, 268
BstDSI CCRYGG 3 cut(s) 195, 228, 364
BstFNI CGCG 2 cut(s) 197, 230
BstH2I RGCGCY 1 cut(s) 183
BstHHI GCGC 1 cut(s) 182
BstKTI GATC 4 cut(s) 39, 142, 352, 700
BstMAI GTCTC 2 cut(s) 571, 766
BstMBI GATC 4 cut(s) 36, 139, 349, 697
BstMCI CGRYCG 1 cut(s) 421
BstMWI GCNNNNNNNGC 6 cut(s) 191, 218, 227, 309, 447, 785
BstNI CCWGG 1 cut(s) 675
BstNSI RCATGY 1 cut(s) 510
BstPAI GACNNNNGTC 1 cut(s) 74
BstSCI CCNGG 3 cut(s) 14, 673, 833
BstSLI GKGCMC 1 cut(s) 840
BstUI CGCG 2 cut(s) 197, 230
BstV1I GCAGC 2 cut(s) 263, 610
BstV2I GAAGAC 3 cut(s) 70, 533, 722
BstX2I RGATCY 2 cut(s) 36, 697
BstYI RGATCY 2 cut(s) 36, 697
BsuI GTATCC 1 cut(s) 380
BsuRI GGCC 3 cut(s) 363, 788, 838
BtgI CCRYGG 3 cut(s) 195, 228, 364
BtrI CACGTC 1 cut(s) 559
BtsIMutI CAGTG 1 cut(s) 826
CfoI GCGC 1 cut(s) 182
Cfr10I RCCGGY 2 cut(s) 206, 407
Cfr13I GGNCC 2 cut(s) 836, 837
Cfr42I CCGCGG 2 cut(s) 198, 231
CseI GACGC 1 cut(s) 713
Csp6I GTAC 2 cut(s) 286, 718
CspAI ACCGGT 2 cut(s) 206, 407
CviAII CATG 4 cut(s) 92, 304, 507, 602
CviQI GTAC 2 cut(s) 286, 718
DdeI CTNAG 2 cut(s) 33, 268
DinI GGCGCC 1 cut(s) 181
DpnI GATC 4 cut(s) 38, 141, 351, 699
DpnII GATC 4 cut(s) 36, 139, 349, 697
DraIII CACNNNGTG 1 cut(s) 589
DrdI GACNNNNNNGTC 1 cut(s) 563
DseDI GACNNNNNNGTC 1 cut(s) 563
EaeI YGGCCR 2 cut(s) 361, 786
Eam1104I CTCTTC 5 cut(s) 92, 114, 123, 128, 248
EarI CTCTTC 5 cut(s) 92, 114, 123, 128, 248
EciI GGCGGA 2 cut(s) 644, 839
Eco24I GRGCYC 1 cut(s) 840
Eco31I GGTCTC 1 cut(s) 571
Eco57I CTGAAG 1 cut(s) 266
Eco72I CACGTG 1 cut(s) 709
EcoO109I RGGNCCY 1 cut(s) 837
EcoRII CCWGG 1 cut(s) 673
EcoT38I GRGCYC 1 cut(s) 840
EgeI GGCGCC 1 cut(s) 181
EheI GGCGCC 1 cut(s) 181
FaeI CATG 4 cut(s) 95, 307, 510, 605
FaiI YATR 7 cut(s) 93, 305, 501, 508, 603, 755, 785
FatI CATG 4 cut(s) 91, 303, 506, 601
FauI CCCGC 1 cut(s) 190
FblI GTMKAC 1 cut(s) 238
Fnu4HI GCNGC 6 cut(s) 183, 195, 249, 252, 624, 627
FriOI GRGCYC 1 cut(s) 840
Fsp4HI GCNGC 6 cut(s) 183, 195, 249, 252, 624, 627
GlaI GCGC 1 cut(s) 181
GluI GCNGC 6 cut(s) 183, 195, 249, 252, 624, 627
HaeII RGCGCY 1 cut(s) 183
HaeIII GGCC 3 cut(s) 363, 788, 838
HapII CCGG 9 cut(s) 15, 177, 207, 408, 417, 713, 789, 811, 834
HgaI GACGC 1 cut(s) 713
HhaI GCGC 1 cut(s) 182
Hin1I GRCGYC 1 cut(s) 180
Hin1II CATG 4 cut(s) 95, 307, 510, 605
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HinfI GANTC 5 cut(s) 31, 54, 161, 759, 771
HpaII CCGG 9 cut(s) 15, 177, 207, 408, 417, 713, 789, 811, 834
HphI GGTGA 2 cut(s) 196, 332
Hpy166II GTNNAC 4 cut(s) 239, 265, 583, 824
Hpy188I TCNGA 6 cut(s) 36, 144, 271, 609, 650, 766
Hpy188III TCNNGA 3 cut(s) 347, 734, 811
Hpy8I GTNNAC 4 cut(s) 239, 265, 583, 824
Hpy99I CGWCG 7 cut(s) 320, 389, 431, 560, 574, 729, 833
HpyAV CCTTC 4 cut(s) 92, 175, 479, 509
HpyCH4III ACNGT 1 cut(s) 589
HpyCH4IV ACGT 4 cut(s) 530, 558, 708, 720
HpyCH4V TGCA 1 cut(s) 493
HpyF10VI GCNNNNNNNGC 6 cut(s) 191, 218, 227, 309, 447, 785
HpyF3I CTNAG 2 cut(s) 33, 268
HpySE526I ACGT 4 cut(s) 530, 558, 708, 720
Hsp92I GRCGYC 1 cut(s) 180
Hsp92II CATG 4 cut(s) 95, 307, 510, 605
HspAI GCGC 1 cut(s) 180
KasI GGCGCC 1 cut(s) 179
Kpn2I TCCGGA 1 cut(s) 810
KspI CCGCGG 2 cut(s) 198, 231
Kzo9I GATC 4 cut(s) 36, 139, 349, 697
LmnI GCTCC 3 cut(s) 317, 419, 766
Lsp1109I GCAGC 2 cut(s) 263, 610
MaeII ACGT 4 cut(s) 530, 558, 708, 720
MaeIII GTNAC 5 cut(s) 214, 320, 502, 772, 794
MalI GATC 4 cut(s) 38, 141, 351, 699
MbiI CCGCTC 2 cut(s) 221, 441
MboI GATC 4 cut(s) 36, 139, 349, 697
MflI RGATCY 2 cut(s) 36, 697
MhlI GDGCHC 2 cut(s) 648, 840
MluCI AATT 2 cut(s) 256, 547
Mly113I GGCGCC 1 cut(s) 180
MlyI GAGTC 3 cut(s) 25, 768, 780
MnlI CCTC 7 cut(s) 137, 167, 182, 383, 386, 671, 863
MroI TCCGGA 1 cut(s) 810
MseI TTAA 1 cut(s) 399
MspA1I CMGCKG 2 cut(s) 197, 230
MspCI CTTAAG 1 cut(s) 398
MspI CCGG 9 cut(s) 15, 177, 207, 408, 417, 713, 789, 811, 834
MspR9I CCNGG 3 cut(s) 16, 675, 835
MvaI CCWGG 1 cut(s) 675
MvnI CGCG 2 cut(s) 197, 230
MwoI GCNNNNNNNGC 6 cut(s) 191, 218, 227, 309, 447, 785
NarI GGCGCC 1 cut(s) 180
NciI CCSGG 2 cut(s) 16, 835
NdeII GATC 4 cut(s) 36, 139, 349, 697
NlaIII CATG 4 cut(s) 95, 307, 510, 605
NlaIV GGNNCC 3 cut(s) 181, 838, 839
NmuCI GTSAC 4 cut(s) 320, 502, 772, 794
NspI RCATGY 1 cut(s) 510
PfeI GAWTC 2 cut(s) 54, 161
PinAI ACCGGT 2 cut(s) 206, 407
PkrI GCNGC 6 cut(s) 184, 196, 250, 253, 625, 628
PleI GAGTC 3 cut(s) 25, 767, 779
PluTI GGCGCC 1 cut(s) 183
PmaCI CACGTG 1 cut(s) 709
PmlI CACGTG 1 cut(s) 709
PpsI GAGTC 3 cut(s) 25, 767, 779
Ppu21I YACGTR 2 cut(s) 709, 721
PshAI GACNNNNGTC 1 cut(s) 74
Psp6I CCWGG 1 cut(s) 673
PspCI CACGTG 1 cut(s) 709
PspGI CCWGG 1 cut(s) 673
PspN4I GGNNCC 3 cut(s) 181, 838, 839
PspOMI GGGCCC 1 cut(s) 836
PspPI GGNCC 2 cut(s) 836, 837
PsuI RGATCY 2 cut(s) 36, 697
RsaI GTAC 2 cut(s) 287, 719
RsaNI GTAC 2 cut(s) 286, 718
SacII CCGCGG 2 cut(s) 198, 231
SaqAI TTAA 1 cut(s) 399
SatI GCNGC 6 cut(s) 183, 195, 249, 252, 624, 627
Sau3AI GATC 4 cut(s) 36, 139, 349, 697
Sau96I GGNCC 2 cut(s) 836, 837
SchI GAGTC 3 cut(s) 25, 768, 780
ScrFI CCNGG 3 cut(s) 16, 675, 835
SduI GDGCHC 2 cut(s) 648, 840
SfoI GGCGCC 1 cut(s) 181
Sfr303I CCGCGG 2 cut(s) 198, 231
SgrAI CRCCGGYG 1 cut(s) 206
SgrBI CCGCGG 2 cut(s) 198, 231
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
Sse9I AATT 2 cut(s) 256, 547
SspDI GGCGCC 1 cut(s) 179
StyD4I CCNGG 3 cut(s) 14, 673, 833
TaaI ACNGT 1 cut(s) 589
TaiI ACGT 4 cut(s) 533, 561, 711, 723
TaqI TCGA 7 cut(s) 57, 138, 159, 348, 483, 555, 855
TasI AATT 2 cut(s) 256, 547
TauI GCSGC 4 cut(s) 185, 197, 251, 629
TfiI GAWTC 2 cut(s) 54, 161
Tru1I TTAA 1 cut(s) 399
Tru9I TTAA 1 cut(s) 399
TscAI CASTG 1 cut(s) 826
TseFI GTSAC 4 cut(s) 320, 502, 772, 794
TseI GCWGC 2 cut(s) 251, 623
Tsp45I GTSAC 4 cut(s) 320, 502, 772, 794
TspGWI ACGGA 2 cut(s) 66, 304
TspRI CASTG 1 cut(s) 826
Vha464I CTTAAG 1 cut(s) 398
XceI RCATGY 1 cut(s) 510
XmiI GTMKAC 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.