Prupe.4G187700_v2.0.a1

ubiE/COQ5 methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0009982
Physical Location & Seq
Reverse (-)
11178009 .. 11180316
2308 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G187700.1

Sequence Viewer

Length: 903 bp
ATGTTCAGAGAGAGGAAAATGGGGAAATCATCAGGTGCGGCTCCGGGCAGCAGAGACTGGACCCAGATCTACGCCATCTATGGCCTGGACCAGTGGCAGACCATTCTCTTCCTTCTCTTCCACGCTGTGCTATTTACCATTTTGTCCCTCCTCTACCTCACTTACTTCGACTTCATCACTCTCTTCTTCCACCGCCTCCTTCCCATCGGCTCGGCTCGGTTCGCCGCCGGCTTCACCGGCTCCGTCACGGCCCTCTCCGCCCTCTGCCTCTTCTTCGCCTCCGCTCACTTCCTGCACTCCTCCCTCCCCCTCCACTACGACGTCGTCCAGCGCATGGTCAACTCGGTCAATGACTGGTCAACGGTCAAGCACGCCCTCGACCTCGGCTGCGGCCGCGGCATACTGTTAAACGCAGTGGCGACTCAGATGAAAAAAGAAGGTAGTTCGGGTCGTGTCGTGGGCCTGGACCGGTCCAAGATGACGAGTCTTTCGTCGACCTTACGGACGGCCAAGATCGAAGGGGTCGGGGAGTACGTGACTTGCCGTGAGGGCGACCCCAGGAGATTGCCGTTTGGGGACGGGTACTTCGACGTGGTGGTATCGGCTGTGTTCGTGCACACCGTTGGGAAGGAGTACGGCCATCGGACGGTGGAGGCGTCGGCGGAGCGGATGAGGGTGGTCGGTGAGATGGTGAGGGTTTTGAAGCCCGGTGGGGTCGGGGTGGTGTGGGACCTACTGCACGTGCCGGAGTACGTGAGGAGGCTCCAGGAGCTGAAGATGGAGGACATTCGGGTCTCGGAGCGGGTCACGGCGTTTATGGTGAGCAGCCACATCGTGTCGTTTCGTAAGCCCAGTCAGCACTTAGTCGGACCGGGCGAGGTCCGGCTTGACTGGAGATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

301

Amino Acids

33.61

Weight (kDa)

9.41

Isoelectric Point (pI)

30.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009982)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15530 AT3G15530 AT5G54400
fragaria_vesca FvH4_3g20760 FvH4_3g20760
malus_domestica MD03G1221800.v1.1 MD11G1239200.v1.1
prunus_persica Prupe.4G187700_v2.0.a1 Prupe.4G187700_v2.0.a1
pyrus_communis pycom03g17060 pycom11g21090
rosa_chinensis RchiOBHm_Chr5g0034991
rosa_laevigata RLG00000033590
rosa_multiflora Rmu_sc0000879.1_g000037
rosa_roxburghii Rroxscaffold_1G00045400
rosa_rugosa Rorug05G0149300
rosa_samantha Rh5AG242300 Rh5BG241900 Rh5CG273400 Rh5DG250500
rosa_wichuraiana Rw5G022130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 791
AatII GACGTC 1 cut(s) 324
AccB7I CCANNNNNTGG 1 cut(s) 334
AccBSI CCGCTC 3 cut(s) 284, 667, 802
AccI GTMKAC 1 cut(s) 494
AccII CGCG 1 cut(s) 396
AcoI YGGCCR 3 cut(s) 391, 507, 637
AcuI CTGAAG 1 cut(s) 794
AcvI CACGTG 1 cut(s) 742
AcyI GRCGYC 2 cut(s) 321, 656
AdeI CACNNNGTG 2 cut(s) 127, 835
AfaI GTAC 4 cut(s) 533, 584, 635, 752
AfiI CCNNNNNNNGG 2 cut(s) 334, 646
AgeI ACCGGT 1 cut(s) 468
AgsI TTSAA 1 cut(s) 703
AjiI CACGTC 1 cut(s) 592
AjnI CCWGG 4 cut(s) 84, 462, 557, 765
AluBI AGCT 1 cut(s) 772
AluI AGCT 1 cut(s) 772
Alw21I GWGCWC 1 cut(s) 618
Alw26I GTCTC 2 cut(s) 48, 799
Alw44I GTGCAC 1 cut(s) 614
AlwNI CAGNNNCTG 2 cut(s) 57, 772
AoxI GGCC 6 cut(s) 82, 249, 391, 460, 507, 637
ApaLI GTGCAC 1 cut(s) 614
ApeKI GCWGC 3 cut(s) 48, 387, 825
ArsI GACNNNNNNTTYG 4 cut(s) 472, 504, 569, 601
AsiGI ACCGGT 1 cut(s) 468
AspLEI GCGC 1 cut(s) 333
AspS9I GGNCC 9 cut(s) 60, 88, 250, 460, 466, 471, 730, 869, 880
AsuC2I CCSGG 3 cut(s) 45, 708, 873
AsuHPI GGTGA 4 cut(s) 226, 695, 703, 832
AvaII GGWCC 7 cut(s) 60, 88, 466, 471, 730, 869, 880
BaeGI GKGCMC 1 cut(s) 618
BbrPI CACGTG 1 cut(s) 742
Bbv12I GWGCWC 1 cut(s) 618
BbvI GCAGC 3 cut(s) 60, 374, 837
BccI CCATC 5 cut(s) 83, 212, 648, 682, 772
BceAI ACGGC 6 cut(s) 264, 522, 528, 553, 652, 825
BcgI CGANNNNNNTGC 2 cut(s) 814, 848
BciT130I CCWGG 4 cut(s) 86, 464, 559, 767
BcnI CCSGG 3 cut(s) 45, 708, 873
BcoDI GTCTC 2 cut(s) 48, 799
BglI GCCNNNNNGGC 1 cut(s) 549
BglII AGATCT 1 cut(s) 66
BisI GCNGC 8 cut(s) 39, 49, 225, 388, 391, 394, 397, 826
BlsI GCNGC 8 cut(s) 40, 50, 226, 389, 392, 395, 398, 827
Bme1390I CCNGG 7 cut(s) 45, 86, 464, 559, 708, 767, 873
Bme18I GGWCC 7 cut(s) 60, 88, 466, 471, 730, 869, 880
BmgBI CACGTC 1 cut(s) 592
BmgT120I GGNCC 9 cut(s) 60, 88, 250, 460, 466, 471, 730, 869, 880
BmiI GGNNCC 5 cut(s) 42, 62, 241, 731, 764
BmrFI CCNGG 7 cut(s) 45, 86, 464, 559, 708, 767, 873
BmrI ACTGGG 1 cut(s) 846
BmsI GCATC 1 cut(s) 887
BmuI ACTGGG 1 cut(s) 846
BpmI CTGGAG 1 cut(s) 749
BpuMI CCSGG 3 cut(s) 45, 708, 873
BsaAI YACGTR 3 cut(s) 535, 742, 754
BsaHI GRCGYC 2 cut(s) 321, 656
BsaI GGTCTC 1 cut(s) 799
BsaJI CCNNGG 3 cut(s) 382, 394, 557
BsaWI WCCGGW 1 cut(s) 468
Bsc4I CCNNNNNNNGG 2 cut(s) 334, 646
Bse118I RCCGGY 3 cut(s) 227, 236, 468
Bse1I ACTGG 5 cut(s) 62, 91, 359, 852, 896
BseBI CCWGG 4 cut(s) 86, 464, 559, 767
BseDI CCNNGG 3 cut(s) 382, 394, 557
BseGI GGATG 1 cut(s) 675
BseLI CCNNNNNNNGG 2 cut(s) 334, 646
BseMII CTCAG 1 cut(s) 437
BseNI ACTGG 5 cut(s) 62, 91, 359, 852, 896
BseRI GAGGAG 3 cut(s) 140, 289, 772
BseSI GKGCMC 1 cut(s) 618
BseX3I CGGCCG 1 cut(s) 391
BseXI GCAGC 3 cut(s) 60, 374, 837
BsgI GTGCAG 2 cut(s) 278, 722
Bsh1236I CGCG 1 cut(s) 396
Bsh1285I CGRYCG 1 cut(s) 394
BshFI GGCC 6 cut(s) 84, 251, 393, 462, 509, 639
BshTI ACCGGT 1 cut(s) 468
BsiEI CGRYCG 1 cut(s) 394
BsiHKAI GWGCWC 1 cut(s) 618
BsiSI CCGG 8 cut(s) 44, 228, 237, 469, 708, 746, 872, 883
BslFI GGGAC 3 cut(s) 130, 590, 743
BslI CCNNNNNNNGG 2 cut(s) 334, 646
BsmAI GTCTC 2 cut(s) 48, 799
BsmFI GGGAC 3 cut(s) 130, 590, 743
BsnI GGCC 6 cut(s) 84, 251, 393, 462, 509, 639
Bso31I GGTCTC 1 cut(s) 799
Bsp1286I GDGCHC 1 cut(s) 618
Bsp143I GATC 2 cut(s) 66, 513
BspANI GGCC 6 cut(s) 84, 251, 393, 462, 509, 639
BspCNI CTCAG 1 cut(s) 436
BspFNI CGCG 1 cut(s) 396
BspLI GGNNCC 5 cut(s) 42, 62, 241, 731, 764
BspTNI GGTCTC 1 cut(s) 799
BsrBI CCGCTC 3 cut(s) 284, 667, 802
BsrFI RCCGGY 3 cut(s) 227, 236, 468
BsrI ACTGG 5 cut(s) 62, 91, 359, 852, 896
BssAI RCCGGY 3 cut(s) 227, 236, 468
BssECI CCNNGG 3 cut(s) 382, 394, 557
BssMI GATC 2 cut(s) 66, 513
BssNI GRCGYC 2 cut(s) 321, 656
Bst2UI CCWGG 4 cut(s) 86, 464, 559, 767
Bst4CI ACNGT 4 cut(s) 364, 405, 622, 649
Bst6I CTCTTC 4 cut(s) 113, 122, 188, 275
BstACI GRCGYC 2 cut(s) 321, 656
BstBAI YACGTR 3 cut(s) 535, 742, 754
BstC8I GCNNGC 2 cut(s) 229, 372
BstDEI CTNAG 2 cut(s) 423, 862
BstDSI CCRYGG 1 cut(s) 394
BstF5I GGATG 1 cut(s) 675
BstFNI CGCG 1 cut(s) 396
BstHHI GCGC 1 cut(s) 333
BstKTI GATC 2 cut(s) 69, 516
BstMAI GTCTC 2 cut(s) 48, 799
BstMBI GATC 2 cut(s) 66, 513
BstMCI CGRYCG 1 cut(s) 394
BstMWI GCNNNNNNNGC 8 cut(s) 221, 237, 257, 393, 396, 549, 769, 856
BstNI CCWGG 4 cut(s) 86, 464, 559, 767
BstSCI CCNGG 7 cut(s) 43, 84, 462, 557, 706, 765, 871
BstSLI GKGCMC 1 cut(s) 618
BstUI CGCG 1 cut(s) 396
BstV1I GCAGC 3 cut(s) 60, 374, 837
BstX2I RGATCY 1 cut(s) 66
BstYI RGATCY 1 cut(s) 66
BstZI CGGCCG 1 cut(s) 391
BsuRI GGCC 6 cut(s) 84, 251, 393, 462, 509, 639
BtgI CCRYGG 1 cut(s) 394
BtrI CACGTC 1 cut(s) 592
BtsCI GGATG 1 cut(s) 675
BtsI GCAGTG 1 cut(s) 420
BtsIMutI CAGTG 2 cut(s) 98, 420
Cac8I GCNNGC 2 cut(s) 229, 372
CaiI CAGNNNCTG 2 cut(s) 57, 772
CciNI GCGGCCGC 1 cut(s) 391
CfoI GCGC 1 cut(s) 333
Cfr10I RCCGGY 3 cut(s) 227, 236, 468
Cfr13I GGNCC 9 cut(s) 60, 88, 250, 460, 466, 471, 730, 869, 880
Cfr42I CCGCGG 1 cut(s) 397
CpoI CGGWCCG 1 cut(s) 869
CseI GACGC 1 cut(s) 645
Csp6I GTAC 4 cut(s) 532, 583, 634, 751
CspAI ACCGGT 1 cut(s) 468
CspI CGGWCCG 1 cut(s) 869
CviAII CATG 1 cut(s) 334
CviQI GTAC 4 cut(s) 532, 583, 634, 751
DdeI CTNAG 2 cut(s) 423, 862
DpnI GATC 2 cut(s) 68, 515
DpnII GATC 2 cut(s) 66, 513
DraIII CACNNNGTG 2 cut(s) 127, 835
DrdI GACNNNNNNGTC 1 cut(s) 791
DseDI GACNNNNNNGTC 1 cut(s) 791
EaeI YGGCCR 3 cut(s) 391, 507, 637
EagI CGGCCG 1 cut(s) 391
Eam1104I CTCTTC 4 cut(s) 113, 122, 188, 275
EarI CTCTTC 4 cut(s) 113, 122, 188, 275
EciI GGCGGA 2 cut(s) 247, 677
EclXI CGGCCG 1 cut(s) 391
Eco31I GGTCTC 1 cut(s) 799
Eco47I GGWCC 7 cut(s) 60, 88, 466, 471, 730, 869, 880
Eco52I CGGCCG 1 cut(s) 391
Eco57I CTGAAG 1 cut(s) 794
Eco72I CACGTG 1 cut(s) 742
EcoO109I RGGNCCY 1 cut(s) 730
EcoRII CCWGG 4 cut(s) 84, 462, 557, 765
FaeI CATG 1 cut(s) 337
FaiI YATR 4 cut(s) 81, 335, 401, 818
FaqI GGGAC 3 cut(s) 130, 590, 743
FatI CATG 1 cut(s) 333
FauI CCCGC 1 cut(s) 795
FblI GTMKAC 1 cut(s) 494
Fnu4HI GCNGC 8 cut(s) 39, 49, 225, 388, 391, 394, 397, 826
FokI GGATG 1 cut(s) 682
Fsp4HI GCNGC 8 cut(s) 39, 49, 225, 388, 391, 394, 397, 826
GlaI GCGC 1 cut(s) 332
GluI GCNGC 8 cut(s) 39, 49, 225, 388, 391, 394, 397, 826
GsuI CTGGAG 1 cut(s) 749
HaeIII GGCC 6 cut(s) 84, 251, 393, 462, 509, 639
HapII CCGG 8 cut(s) 44, 228, 237, 469, 708, 746, 872, 883
HgaI GACGC 1 cut(s) 645
HhaI GCGC 1 cut(s) 333
Hin1I GRCGYC 2 cut(s) 321, 656
Hin1II CATG 1 cut(s) 337
Hin6I GCGC 1 cut(s) 331
HinP1I GCGC 1 cut(s) 331
HincII GTYRAC 3 cut(s) 340, 360, 495
HindII GTYRAC 3 cut(s) 340, 360, 495
HinfI GANTC 2 cut(s) 421, 484
HpaII CCGG 8 cut(s) 44, 228, 237, 469, 708, 746, 872, 883
HphI GGTGA 4 cut(s) 226, 695, 703, 832
Hpy166II GTNNAC 4 cut(s) 340, 360, 495, 616
Hpy188I TCNGA 5 cut(s) 8, 426, 645, 799, 869
Hpy8I GTNNAC 4 cut(s) 340, 360, 495, 616
Hpy99I CGWCG 5 cut(s) 323, 326, 496, 593, 661
HpyAV CCTTC 5 cut(s) 122, 209, 431, 512, 622
HpyCH4III ACNGT 4 cut(s) 364, 405, 622, 649
HpyCH4IV ACGT 5 cut(s) 321, 534, 591, 741, 753
HpyCH4V TGCA 3 cut(s) 295, 616, 739
HpyF10VI GCNNNNNNNGC 8 cut(s) 221, 237, 257, 393, 396, 549, 769, 856
HpyF3I CTNAG 2 cut(s) 423, 862
HpySE526I ACGT 5 cut(s) 321, 534, 591, 741, 753
Hsp92I GRCGYC 2 cut(s) 321, 656
Hsp92II CATG 1 cut(s) 337
HspAI GCGC 1 cut(s) 331
KroI GCCGGC 1 cut(s) 227
KroNI GCCGGC 1 cut(s) 229
KspI CCGCGG 1 cut(s) 397
Kzo9I GATC 2 cut(s) 66, 513
LmnI GCTCC 6 cut(s) 46, 245, 664, 768, 769, 799
Lsp1109I GCAGC 3 cut(s) 60, 374, 837
LweI GCATC 1 cut(s) 887
MaeII ACGT 5 cut(s) 321, 534, 591, 741, 753
MaeIII GTNAC 3 cut(s) 244, 535, 805
MalI GATC 2 cut(s) 68, 515
MbiI CCGCTC 3 cut(s) 284, 667, 802
MboI GATC 2 cut(s) 66, 513
MboII GAAGA 7 cut(s) 100, 109, 175, 178, 262, 265, 787
MflI RGATCY 1 cut(s) 66
MhlI GDGCHC 1 cut(s) 618
MlyI GAGTC 2 cut(s) 415, 493
MmeI TCCRAC 1 cut(s) 847
MroNI GCCGGC 1 cut(s) 227
MseI TTAA 1 cut(s) 407
MspA1I CMGCKG 1 cut(s) 396
MspI CCGG 8 cut(s) 44, 228, 237, 469, 708, 746, 872, 883
MspR9I CCNGG 7 cut(s) 45, 86, 464, 559, 708, 767, 873
MvaI CCWGG 4 cut(s) 86, 464, 559, 767
MvnI CGCG 1 cut(s) 396
MwoI GCNNNNNNNGC 8 cut(s) 221, 237, 257, 393, 396, 549, 769, 856
NaeI GCCGGC 1 cut(s) 229
NciI CCSGG 3 cut(s) 45, 708, 873
NdeII GATC 2 cut(s) 66, 513
NgoMIV GCCGGC 1 cut(s) 227
NlaIII CATG 1 cut(s) 337
NlaIV GGNNCC 5 cut(s) 42, 62, 241, 731, 764
NmeAIII GCCGAG 2 cut(s) 191, 363
NmuCI GTSAC 3 cut(s) 244, 535, 805
NotI GCGGCCGC 1 cut(s) 391
PcsI WCGNNNNNNNCGW 6 cut(s) 488, 531, 585, 618, 653, 873
PdiI GCCGGC 1 cut(s) 229
PflFI GACNNNGTC 1 cut(s) 323
PflMI CCANNNNNTGG 1 cut(s) 334
PfoI TCCNGGA 1 cut(s) 765
PinAI ACCGGT 1 cut(s) 468
PkrI GCNGC 8 cut(s) 40, 50, 226, 389, 392, 395, 398, 827
PleI GAGTC 2 cut(s) 415, 492
PmaCI CACGTG 1 cut(s) 742
PmlI CACGTG 1 cut(s) 742
PpsI GAGTC 2 cut(s) 415, 492
Ppu21I YACGTR 3 cut(s) 535, 742, 754
PpuMI RGGWCCY 1 cut(s) 730
Psp5II RGGWCCY 1 cut(s) 730
Psp6I CCWGG 4 cut(s) 84, 462, 557, 765
PspCI CACGTG 1 cut(s) 742
PspGI CCWGG 4 cut(s) 84, 462, 557, 765
PspN4I GGNNCC 5 cut(s) 42, 62, 241, 731, 764
PspPI GGNCC 9 cut(s) 60, 88, 250, 460, 466, 471, 730, 869, 880
PspPPI RGGWCCY 1 cut(s) 730
PstNI CAGNNNCTG 2 cut(s) 57, 772
PsuI RGATCY 1 cut(s) 66
PsyI GACNNNGTC 1 cut(s) 323
RsaI GTAC 4 cut(s) 533, 584, 635, 752
RsaNI GTAC 4 cut(s) 532, 583, 634, 751
Rsr2I CGGWCCG 1 cut(s) 869
RsrII CGGWCCG 1 cut(s) 869
SacII CCGCGG 1 cut(s) 397
SalI GTCGAC 1 cut(s) 493
SaqAI TTAA 1 cut(s) 407
SatI GCNGC 8 cut(s) 39, 49, 225, 388, 391, 394, 397, 826
Sau3AI GATC 2 cut(s) 66, 513
Sau96I GGNCC 9 cut(s) 60, 88, 250, 460, 466, 471, 730, 869, 880
SchI GAGTC 2 cut(s) 415, 493
ScrFI CCNGG 7 cut(s) 45, 86, 464, 559, 708, 767, 873
SduI GDGCHC 1 cut(s) 618
SfaNI GCATC 1 cut(s) 887
Sfr303I CCGCGG 1 cut(s) 397
SgrBI CCGCGG 1 cut(s) 397
SinI GGWCC 7 cut(s) 60, 88, 466, 471, 730, 869, 880
StyD4I CCNGG 7 cut(s) 43, 84, 462, 557, 706, 765, 871
TaaI ACNGT 4 cut(s) 364, 405, 622, 649
TaiI ACGT 5 cut(s) 324, 537, 594, 744, 756
TaqI TCGA 5 cut(s) 168, 378, 494, 516, 588
TaqII GACCGA 1 cut(s) 334
TauI GCSGC 5 cut(s) 41, 227, 393, 396, 399
Tru1I TTAA 1 cut(s) 407
Tru9I TTAA 1 cut(s) 407
TscAI CASTG 2 cut(s) 98, 420
TseFI GTSAC 3 cut(s) 244, 535, 805
TseI GCWGC 3 cut(s) 48, 387, 825
Tsp45I GTSAC 3 cut(s) 244, 535, 805
TspDTI ATGAA 2 cut(s) 163, 443
TspGWI ACGGA 2 cut(s) 232, 517
TspRI CASTG 2 cut(s) 98, 420
Tth111I GACNNNGTC 1 cut(s) 323
Van91I CCANNNNNTGG 1 cut(s) 334
VneI GTGCAC 1 cut(s) 614
VpaK11BI GGWCC 7 cut(s) 60, 88, 466, 471, 730, 869, 880
XcmI CCANNNNNNNNNTGG 1 cut(s) 82
XmiI GTMKAC 1 cut(s) 494
ZraI GACGTC 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.