AT5G54400

ubiE/COQ5 methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0009982
Physical Location & Seq
Forward (+)
22090417 .. 22092165
1749 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G54400.1

Sequence Viewer

Length: 879 bp
ATGGGGAAGACAACGAATGGAACAAGAGACTGGGCTCAGATCTACGCAATCTACGGGATCGAGCAAAAACACACACTCATCTTCCTGATACTCAACGCGATTGCTTTCTCTATACTCTCCACCGTCTTTGTCATCTACTTTAACCCGATCTGCGTCTTCTTTCAATCGTTTCTCTTCTCTAACGCCGCGGCAGCTAGATTCTCGGCTGGATTCTTTGGAGCTGTTACGGCGCTTTCCGCCGTGTGTTTGTTTTTCGCGGCGGCGAATTTTTTTTACTCTGCTGTGCCGCTTAGGTATGAGATGGCGCAGAGGATGGTTGGATCTGTTGGAGATTGGTCGAGTGTGAAGACCGCTCTTGACTTAGGTTGTGGTCGTGGGATTTTGCTTAATGCCGTTGCGACGCAGCTCAAGAAAACTGGTAGCTCGGGTCGGGTCGTTGGGTTGGATCGGTCCATGACTACTACTCTCTCTACTCTACGTACAGCTCACATCGAAGGAGTACAAGAGTACGTGACATGCCGTGAAGGAGACGTAAGAAGGCTTCCGTTTAGTGATAACTACTTTGACGTGGTGGTTTCTGCAGTGTTTCTCCATACCATTGGGAAAGAATACGGTCAGAAGACGGTGGAGGCGGCGGCAGAGAGGATGAGAGTACTTGGAGAAGCGGTGAGAGTGTTGAAACCAGGAGGAGTTGGAGTGGTTTGGGACTTAGTGCACGTGCCGGAGTATGTGCGGCGGTTACAGGAGCTGAGGATGGAGGAGATTAGAGTTTCGAAACGAGTCACTGCGTTTATGGTTAAGAGCCATATGGTCTCGTTTAAGAAACCTAGTCAGCATTTTGTGGGATCTGGTGAAGTACGTTTAGATTGGAGATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

292

Amino Acids

32.44

Weight (kDa)

9.51

Isoelectric Point (pI)

28.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_31 PF13847 116 - 243 1.3e-13 Methyltransferase domain
Ubie_methyltran PF01209 116 - 239 4e-06 ubiE/COQ5 methyltransferase family
Methyltransf_11 PF08241 119 - 232 5.5e-16 Methyltransferase domain
Methyltransf_25 PF13649 119 - 230 3.4e-13 Methyltransferase domain
Methyltransf_12 PF08242 119 - 231 4.7e-07 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009982)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15530 AT3G15530 AT5G54400
fragaria_vesca FvH4_3g20760 FvH4_3g20760
malus_domestica MD03G1221800.v1.1 MD11G1239200.v1.1
prunus_persica Prupe.4G187700_v2.0.a1 Prupe.4G187700_v2.0.a1
pyrus_communis pycom03g17060 pycom11g21090
rosa_chinensis RchiOBHm_Chr5g0034991
rosa_laevigata RLG00000033590
rosa_multiflora Rmu_sc0000879.1_g000037
rosa_roxburghii Rroxscaffold_1G00045400
rosa_rugosa Rorug05G0149300
rosa_samantha Rh5AG242300 Rh5BG241900 Rh5CG273400 Rh5DG250500
rosa_wichuraiana Rw5G022130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 353
AccII CGCG 3 cut(s) 98, 188, 257
AclWI GGATC 4 cut(s) 65, 328, 453, 853
AcsI RAATTY 1 cut(s) 265
AcvI CACGTG 1 cut(s) 718
AfaI GTAC 5 cut(s) 481, 501, 509, 654, 858
AgsI TTSAA 2 cut(s) 164, 679
AjiI CACGTC 1 cut(s) 568
AjnI CCWGG 1 cut(s) 682
AluBI AGCT 6 cut(s) 194, 221, 406, 423, 485, 748
AluI AGCT 6 cut(s) 194, 221, 406, 423, 485, 748
Alw21I GWGCWC 1 cut(s) 717
Alw26I GTCTC 3 cut(s) 21, 522, 817
Alw44I GTGCAC 1 cut(s) 713
AlwI GGATC 4 cut(s) 65, 328, 453, 853
AlwNI CAGNNNCTG 1 cut(s) 748
Ama87I CYCGRG 1 cut(s) 424
ApaLI GTGCAC 1 cut(s) 713
ApeKI GCWGC 2 cut(s) 191, 403
ApoI RAATTY 1 cut(s) 265
AspLEI GCGC 2 cut(s) 232, 307
AspS9I GGNCC 1 cut(s) 450
AsuHPI GGTGA 2 cut(s) 679, 863
AsuII TTCGAA 1 cut(s) 773
AvaI CYCGRG 1 cut(s) 424
AvaII GGWCC 1 cut(s) 450
BaeGI GKGCMC 1 cut(s) 717
BanII GRGCYC 1 cut(s) 37
BarI GAAGNNNNNNTAC 2 cut(s) 525, 557
BbrPI CACGTG 1 cut(s) 718
BbsI GAAGAC 4 cut(s) 14, 148, 353, 626
Bbv12I GWGCWC 1 cut(s) 717
BbvCI CCTCAGC 1 cut(s) 749
BbvI GCAGC 2 cut(s) 203, 415
BccI CCATC 3 cut(s) 295, 307, 748
BceAI ACGGC 4 cut(s) 224, 243, 377, 504
BciT130I CCWGG 1 cut(s) 684
BcoDI GTCTC 3 cut(s) 21, 522, 817
BfaI CTAG 2 cut(s) 195, 828
BfmI CTRYAG 1 cut(s) 579
BfoI RGCGCY 1 cut(s) 233
BglII AGATCT 1 cut(s) 39
BmcAI AGTACT 1 cut(s) 654
Bme1390I CCNGG 1 cut(s) 684
Bme18I GGWCC 1 cut(s) 450
BmeT110I CYCGRG 1 cut(s) 424
BmgBI CACGTC 1 cut(s) 568
BmgT120I GGNCC 1 cut(s) 450
BmrFI CCNGG 1 cut(s) 684
BmrI ACTGGG 1 cut(s) 40
BmuI ACTGGG 1 cut(s) 40
BpiI GAAGAC 4 cut(s) 14, 148, 353, 626
Bpu10I CCTNAGC 2 cut(s) 290, 749
Bpu14I TTCGAA 1 cut(s) 773
BpuEI CTTGAG 1 cut(s) 392
BsaAI YACGTR 3 cut(s) 479, 511, 718
BsaI GGTCTC 1 cut(s) 817
BsaJI CCNNGG 1 cut(s) 186
BsaXI ACNNNNNCTCC 4 cut(s) 651, 681, 681, 711
Bse1I ACTGG 2 cut(s) 35, 421
BseBI CCWGG 1 cut(s) 684
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 3 cut(s) 318, 651, 759
BseMII CTCAG 2 cut(s) 50, 740
BseNI ACTGG 2 cut(s) 35, 421
BseRI GAGGAG 2 cut(s) 702, 773
BseSI GKGCMC 1 cut(s) 717
BseXI GCAGC 2 cut(s) 203, 415
Bsh1236I CGCG 3 cut(s) 98, 188, 257
BsiHKAI GWGCWC 1 cut(s) 717
BsiHKCI CYCGRG 1 cut(s) 424
BsiSI CCGG 1 cut(s) 722
BslFI GGGAC 1 cut(s) 719
BsmAI GTCTC 3 cut(s) 21, 522, 817
BsmBI CGTCTC 1 cut(s) 522
BsmFI GGGAC 1 cut(s) 719
Bso31I GGTCTC 1 cut(s) 817
BsoBI CYCGRG 1 cut(s) 424
Bsp119I TTCGAA 1 cut(s) 773
Bsp1286I GDGCHC 2 cut(s) 37, 717
Bsp143I GATC 6 cut(s) 39, 57, 147, 320, 445, 845
BspCNI CTCAG 2 cut(s) 49, 741
BspFNI CGCG 3 cut(s) 98, 188, 257
BspMAI CTGCAG 1 cut(s) 583
BspPI GGATC 4 cut(s) 65, 328, 453, 853
BspT104I TTCGAA 1 cut(s) 773
BspTNI GGTCTC 1 cut(s) 817
BsrBI CCGCTC 1 cut(s) 353
BsrI ACTGG 2 cut(s) 35, 421
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 6 cut(s) 39, 57, 147, 320, 445, 845
Bst2UI CCWGG 1 cut(s) 684
Bst4CI ACNGT 3 cut(s) 124, 614, 625
Bst6I CTCTTC 1 cut(s) 179
BstBAI YACGTR 3 cut(s) 479, 511, 718
BstBI TTCGAA 1 cut(s) 773
BstDEI CTNAG 5 cut(s) 36, 290, 361, 709, 749
BstDSI CCRYGG 1 cut(s) 186
BstF5I GGATG 3 cut(s) 318, 651, 759
BstFNI CGCG 3 cut(s) 98, 188, 257
BstH2I RGCGCY 1 cut(s) 233
BstHHI GCGC 2 cut(s) 232, 307
BstKTI GATC 6 cut(s) 42, 60, 150, 323, 448, 848
BstMAI GTCTC 3 cut(s) 21, 522, 817
BstMBI GATC 6 cut(s) 39, 57, 147, 320, 445, 845
BstMWI GCNNNNNNNGC 3 cut(s) 191, 227, 236
BstNI CCWGG 1 cut(s) 684
BstNSI RCATGY 1 cut(s) 519
BstSCI CCNGG 1 cut(s) 682
BstSFI CTRYAG 1 cut(s) 579
BstSLI GKGCMC 1 cut(s) 717
BstSNI TACGTA 1 cut(s) 479
BstUI CGCG 3 cut(s) 98, 188, 257
BstV1I GCAGC 2 cut(s) 203, 415
BstV2I GAAGAC 4 cut(s) 14, 148, 353, 626
BstX2I RGATCY 3 cut(s) 39, 320, 845
BstXI CCANNNNNNTGG 1 cut(s) 599
BstYI RGATCY 3 cut(s) 39, 320, 845
BtgI CCRYGG 1 cut(s) 186
BtrI CACGTC 1 cut(s) 568
BtsCI GGATG 3 cut(s) 318, 651, 759
BtsI GCAGTG 2 cut(s) 588, 783
BtsIMutI CAGTG 2 cut(s) 588, 783
CaiI CAGNNNCTG 1 cut(s) 748
CfoI GCGC 2 cut(s) 232, 307
Cfr13I GGNCC 1 cut(s) 450
Cfr42I CCGCGG 1 cut(s) 189
CseI GACGC 2 cut(s) 142, 409
Csp6I GTAC 5 cut(s) 480, 500, 508, 653, 857
CspCI CAANNNNNGTGG 2 cut(s) 109, 144
CviAII CATG 2 cut(s) 454, 516
CviQI GTAC 5 cut(s) 480, 500, 508, 653, 857
DdeI CTNAG 5 cut(s) 36, 290, 361, 709, 749
DpnI GATC 6 cut(s) 41, 59, 149, 322, 447, 847
DpnII GATC 6 cut(s) 39, 57, 147, 320, 445, 845
Eam1104I CTCTTC 1 cut(s) 179
EarI CTCTTC 1 cut(s) 179
EciI GGCGGA 1 cut(s) 226
Eco105I TACGTA 1 cut(s) 479
Eco24I GRGCYC 1 cut(s) 37
Eco31I GGTCTC 1 cut(s) 817
Eco47I GGWCC 1 cut(s) 450
Eco72I CACGTG 1 cut(s) 718
Eco88I CYCGRG 1 cut(s) 424
EcoRII CCWGG 1 cut(s) 682
EcoT38I GRGCYC 1 cut(s) 37
Esp3I CGTCTC 1 cut(s) 522
FaeI CATG 2 cut(s) 457, 519
FaiI YATR 9 cut(s) 113, 297, 455, 517, 594, 729, 794, 807, 809
FaqI GGGAC 1 cut(s) 719
FatI CATG 2 cut(s) 453, 515
FauNDI CATATG 1 cut(s) 807
FokI GGATG 3 cut(s) 325, 658, 766
FriOI GRGCYC 1 cut(s) 37
FspBI CTAG 2 cut(s) 195, 828
GlaI GCGC 2 cut(s) 231, 306
HaeII RGCGCY 1 cut(s) 233
HapII CCGG 1 cut(s) 722
HgaI GACGC 2 cut(s) 142, 409
HhaI GCGC 2 cut(s) 232, 307
Hin1II CATG 2 cut(s) 457, 519
Hin6I GCGC 2 cut(s) 230, 305
HinP1I GCGC 2 cut(s) 230, 305
HinfI GANTC 3 cut(s) 198, 210, 780
HpaII CCGG 1 cut(s) 722
HphI GGTGA 2 cut(s) 679, 863
Hpy166II GTNNAC 1 cut(s) 715
Hpy188I TCNGA 2 cut(s) 39, 618
Hpy188III TCNNGA 3 cut(s) 85, 356, 409
Hpy8I GTNNAC 1 cut(s) 715
Hpy99I CGWCG 1 cut(s) 403
HpyAV CCTTC 3 cut(s) 488, 518, 531
HpyCH4III ACNGT 3 cut(s) 124, 614, 625
HpyCH4IV ACGT 6 cut(s) 478, 510, 531, 567, 717, 859
HpyCH4V TGCA 2 cut(s) 581, 715
HpyF10VI GCNNNNNNNGC 3 cut(s) 191, 227, 236
HpyF3I CTNAG 5 cut(s) 36, 290, 361, 709, 749
HpySE526I ACGT 6 cut(s) 478, 510, 531, 567, 717, 859
Hsp92II CATG 2 cut(s) 457, 519
HspAI GCGC 2 cut(s) 230, 305
KspI CCGCGG 1 cut(s) 189
Kzo9I GATC 6 cut(s) 39, 57, 147, 320, 445, 845
LmnI GCTCC 2 cut(s) 218, 745
LpnPI CCDG 9 cut(s) 16, 98, 192, 402, 669, 696, 728, 735, 834
Lsp1109I GCAGC 2 cut(s) 203, 415
MaeI CTAG 2 cut(s) 195, 828
MaeII ACGT 6 cut(s) 478, 510, 531, 567, 717, 859
MaeIII GTNAC 4 cut(s) 223, 511, 738, 781
MalI GATC 6 cut(s) 41, 59, 149, 322, 447, 847
MbiI CCGCTC 1 cut(s) 353
MboI GATC 6 cut(s) 39, 57, 147, 320, 445, 845
MboII GAAGA 6 cut(s) 19, 73, 148, 166, 358, 631
MflI RGATCY 3 cut(s) 39, 320, 845
MhlI GDGCHC 2 cut(s) 37, 717
MluCI AATT 1 cut(s) 265
MlyI GAGTC 1 cut(s) 789
MmeI TCCRAC 4 cut(s) 298, 307, 423, 673
MnlI CCTC 6 cut(s) 303, 622, 636, 680, 744, 751
MseI TTAA 5 cut(s) 141, 387, 798, 819, 877
MspA1I CMGCKG 1 cut(s) 188
MspI CCGG 1 cut(s) 722
MspR9I CCNGG 1 cut(s) 684
MvaI CCWGG 1 cut(s) 684
MvnI CGCG 3 cut(s) 98, 188, 257
MwoI GCNNNNNNNGC 3 cut(s) 191, 227, 236
NdeI CATATG 1 cut(s) 807
NdeII GATC 6 cut(s) 39, 57, 147, 320, 445, 845
NlaIII CATG 2 cut(s) 457, 519
NmeAIII GCCGAG 1 cut(s) 182
NmuCI GTSAC 2 cut(s) 511, 781
NspI RCATGY 1 cut(s) 519
NspV TTCGAA 1 cut(s) 773
PfeI GAWTC 2 cut(s) 198, 210
PleI GAGTC 1 cut(s) 788
PmaCI CACGTG 1 cut(s) 718
PmlI CACGTG 1 cut(s) 718
PpsI GAGTC 1 cut(s) 788
Ppu21I YACGTR 3 cut(s) 479, 511, 718
Psp6I CCWGG 1 cut(s) 682
PspCI CACGTG 1 cut(s) 718
PspGI CCWGG 1 cut(s) 682
PspPI GGNCC 1 cut(s) 450
PstI CTGCAG 1 cut(s) 583
PstNI CAGNNNCTG 1 cut(s) 748
PsuI RGATCY 3 cut(s) 39, 320, 845
RsaI GTAC 5 cut(s) 481, 501, 509, 654, 858
RsaNI GTAC 5 cut(s) 480, 500, 508, 653, 857
SacII CCGCGG 1 cut(s) 189
SaqAI TTAA 5 cut(s) 141, 387, 798, 819, 877
Sau3AI GATC 6 cut(s) 39, 57, 147, 320, 445, 845
Sau96I GGNCC 1 cut(s) 450
ScaI AGTACT 1 cut(s) 654
SchI GAGTC 1 cut(s) 789
ScrFI CCNGG 1 cut(s) 684
SduI GDGCHC 2 cut(s) 37, 717
SfcI CTRYAG 1 cut(s) 579
Sfr303I CCGCGG 1 cut(s) 189
SfuI TTCGAA 1 cut(s) 773
SgrBI CCGCGG 1 cut(s) 189
SinI GGWCC 1 cut(s) 450
SmlI CTYRAG 1 cut(s) 407
SmoI CTYRAG 1 cut(s) 407
SnaBI TACGTA 1 cut(s) 479
Sse9I AATT 1 cut(s) 265
SspMI CTAG 2 cut(s) 195, 828
StyD4I CCNGG 1 cut(s) 682
TaaI ACNGT 3 cut(s) 124, 614, 625
TaiI ACGT 6 cut(s) 481, 513, 534, 570, 720, 862
TaqI TCGA 4 cut(s) 60, 338, 492, 773
TaqII GACCGA 1 cut(s) 438
TasI AATT 1 cut(s) 265
TatI WGTACW 2 cut(s) 499, 652
TauI GCSGC 8 cut(s) 188, 191, 260, 263, 289, 635, 638, 736
TfiI GAWTC 2 cut(s) 198, 210
Tru1I TTAA 5 cut(s) 141, 387, 798, 819, 877
Tru9I TTAA 5 cut(s) 141, 387, 798, 819, 877
TscAI CASTG 2 cut(s) 588, 790
TseFI GTSAC 2 cut(s) 511, 781
TseI GCWGC 2 cut(s) 191, 403
Tsp45I GTSAC 2 cut(s) 511, 781
TspGWI ACGGA 1 cut(s) 534
TspRI CASTG 2 cut(s) 588, 790
VneI GTGCAC 1 cut(s) 713
VpaK11BI GGWCC 1 cut(s) 450
XapI RAATTY 1 cut(s) 265
XceI RCATGY 1 cut(s) 519
XspI CTAG 2 cut(s) 195, 828
ZrmI AGTACT 1 cut(s) 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.