FvH4_3g20760

ubiE/COQ5 methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0009982
Physical Location & Seq
Reverse (-)
13806457 .. 13808572
2116 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g20760.t1

Sequence Viewer

Length: 867 bp
ATGGGGAAAGCAGGAAGCAGAGACTGGACTCAGATCTACGCCATATACGGGCTAGACCAGTGGCAGACCATAGTATTCCTTCTCTTCCACGCTGTGCTTTTTACCATTCTGTCCCTCCTGTACCTCACTTACTTCGACCCGATCACTCTCTTCTTCCACCGCCTCCTCCCCATCGCCTCCGCCCGCTTTGCCGCCGGCTTCACCGGCTCCGTCACCGCGCTCTCCGCCCTCTGCCTCTTCTTCGCGTCCTTCCACTTCCTCCACTCCTCCCTCCCGCTCCACTACGACGTCGTCCAGCGCATGGTCGCCTCCGTCCACGACTGGTCCACCGTCAAGCACGCCCTCGACCTCGGCTGCGGCCGCGGCATCCTCCTCAACGCCGTCGCCACCCAGCTCAAGAAAGAAGGCAGCTCGGGCCGGGTCGTCGGGCTGGACCGGTCCAGGATGACCAGCCTCAACACGTTACGCACTGCCAAGCTGGAAGGCGTCGGGGAGTACGTCACTTGCCGTGAGGGTGACCCCAGGCGATTGCCGTTCGGGGACAACTACTTCGACGTGGTGGTATCCGCTGTGTTCGTCCACACCGTAGGGAAGGAGTACGGCCATCGGACGGTGGAGGCTTCCGCGGAGAGGATGAGGGTGGTCGGTGAGATGGTCCGGGTATTAAAGCCCGGTGGGTCCGGGGTCGTGTGGGACCTACTGCACGTTCCGGAATACGTGCGGAGACTGCAGGAGCTCAAGATGGAGGACATTCGGGTCTCGGAGCGGGTCACGGCCTTCATGGTCAGCAGTCAAATCGTGTCGTTTAGAAAGCCCAGTCAGCACTCTTTTGGGCTTGGAGAGGTCAGGCTGGACTGGAGATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

289

Amino Acids

32.39

Weight (kDa)

9.21

Isoelectric Point (pI)

26.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ubie_methyltran PF01209 100 - 232 1.8e-06 ubiE/COQ5 methyltransferase family
Methyltransf_31 PF13847 113 - 234 7.6e-11 Methyltransferase domain
Methyltransf_11 PF08241 115 - 227 7.5e-15 Methyltransferase domain
Methyltransf_25 PF13649 115 - 226 2.2e-12 Methyltransferase domain
Methyltransf_12 PF08242 115 - 226 1.4e-06 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009982)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15530 AT3G15530 AT5G54400
fragaria_vesca FvH4_3g20760 FvH4_3g20760
malus_domestica MD03G1221800.v1.1 MD11G1239200.v1.1
prunus_persica Prupe.4G187700_v2.0.a1 Prupe.4G187700_v2.0.a1
pyrus_communis pycom03g17060 pycom11g21090
rosa_chinensis RchiOBHm_Chr5g0034991
rosa_laevigata RLG00000033590
rosa_multiflora Rmu_sc0000879.1_g000037
rosa_roxburghii Rroxscaffold_1G00045400
rosa_rugosa Rorug05G0149300
rosa_samantha Rh5AG242300 Rh5BG241900 Rh5CG273400 Rh5DG250500
rosa_wichuraiana Rw5G022130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 755
AatII GACGTC 1 cut(s) 291
AccB7I CCANNNNNTGG 1 cut(s) 301
AccBSI CCGCTC 2 cut(s) 277, 766
AccII CGCG 4 cut(s) 218, 245, 363, 626
AccIII TCCGGA 1 cut(s) 709
AcoI YGGCCR 2 cut(s) 358, 601
AcyI GRCGYC 2 cut(s) 288, 486
AdeI CACNNNGTG 1 cut(s) 94
AfaI GTAC 3 cut(s) 122, 497, 599
AfiI CCNNNNNNNGG 4 cut(s) 48, 301, 610, 630
AflIII ACRYGT 1 cut(s) 459
AgeI ACCGGT 1 cut(s) 435
AjiI CACGTC 1 cut(s) 556
AjnI CCWGG 2 cut(s) 440, 521
AluBI AGCT 4 cut(s) 394, 411, 478, 736
AluI AGCT 4 cut(s) 394, 411, 478, 736
Alw21I GWGCWC 1 cut(s) 738
Alw26I GTCTC 3 cut(s) 15, 718, 763
AlwNI CAGNNNCTG 1 cut(s) 24
Ama87I CYCGRG 1 cut(s) 412
Aor13HI TCCGGA 1 cut(s) 709
AoxI GGCC 4 cut(s) 358, 415, 601, 774
ApeKI GCWGC 2 cut(s) 354, 408
ArsI GACNNNNNNTTYG 2 cut(s) 533, 565
AsiGI ACCGGT 1 cut(s) 435
AspLEI GCGC 2 cut(s) 220, 300
AspS9I GGNCC 7 cut(s) 324, 415, 433, 438, 655, 678, 694
AsuC2I CCSGG 4 cut(s) 419, 659, 672, 682
AsuHPI GGTGA 4 cut(s) 193, 205, 527, 659
AvaI CYCGRG 1 cut(s) 412
AvaII GGWCC 6 cut(s) 324, 433, 438, 655, 678, 694
BanII GRGCYC 1 cut(s) 738
Bbv12I GWGCWC 1 cut(s) 738
BbvI GCAGC 2 cut(s) 341, 420
BccI CCATC 4 cut(s) 179, 612, 646, 736
BceAI ACGGC 5 cut(s) 365, 492, 517, 616, 789
BcgI CGANNNNNNTGC 2 cut(s) 778, 812
BciT130I CCWGG 2 cut(s) 442, 523
BciVI GTATCC 1 cut(s) 574
BcnI CCSGG 4 cut(s) 419, 659, 672, 682
BcoDI GTCTC 3 cut(s) 15, 718, 763
BfaI CTAG 1 cut(s) 53
BfmI CTRYAG 1 cut(s) 728
BfuI GTATCC 1 cut(s) 574
BglII AGATCT 1 cut(s) 33
BisI GCNGC 6 cut(s) 192, 355, 358, 361, 364, 409
BlsI GCNGC 6 cut(s) 193, 356, 359, 362, 365, 410
Bme1390I CCNGG 6 cut(s) 419, 442, 523, 659, 672, 682
Bme18I GGWCC 6 cut(s) 324, 433, 438, 655, 678, 694
BmeT110I CYCGRG 1 cut(s) 412
BmgBI CACGTC 1 cut(s) 556
BmgT120I GGNCC 7 cut(s) 324, 415, 433, 438, 655, 678, 694
BmiI GGNNCC 3 cut(s) 208, 679, 695
BmrFI CCNGG 6 cut(s) 419, 442, 523, 659, 672, 682
BmrI ACTGGG 1 cut(s) 810
BmsI GCATC 2 cut(s) 375, 851
BmuI ACTGGG 1 cut(s) 810
BpuEI CTTGAG 2 cut(s) 380, 722
BpuMI CCSGG 4 cut(s) 419, 659, 672, 682
BsaAI YACGTR 1 cut(s) 718
BsaHI GRCGYC 2 cut(s) 288, 486
BsaI GGTCTC 1 cut(s) 763
BsaJI CCNNGG 5 cut(s) 349, 361, 521, 624, 681
BsaWI WCCGGW 2 cut(s) 435, 709
Bsc4I CCNNNNNNNGG 4 cut(s) 48, 301, 610, 630
Bse118I RCCGGY 3 cut(s) 194, 203, 435
Bse1I ACTGG 5 cut(s) 29, 58, 326, 816, 860
BseAI TCCGGA 1 cut(s) 709
BseBI CCWGG 2 cut(s) 442, 523
BseDI CCNNGG 5 cut(s) 349, 361, 521, 624, 681
BseGI GGATG 3 cut(s) 366, 450, 639
BseLI CCNNNNNNNGG 4 cut(s) 48, 301, 610, 630
BseMII CTCAG 1 cut(s) 44
BseNI ACTGG 5 cut(s) 29, 58, 326, 816, 860
BseRI GAGGAG 3 cut(s) 155, 256, 362
BseX3I CGGCCG 1 cut(s) 358
BseXI GCAGC 2 cut(s) 341, 420
BseYI CCCAGC 1 cut(s) 390
BsgI GTGCAG 1 cut(s) 686
Bsh1236I CGCG 4 cut(s) 218, 245, 363, 626
Bsh1285I CGRYCG 1 cut(s) 361
BshFI GGCC 4 cut(s) 360, 417, 603, 776
BshTI ACCGGT 1 cut(s) 435
BsiEI CGRYCG 1 cut(s) 361
BsiHKAI GWGCWC 1 cut(s) 738
BsiHKCI CYCGRG 1 cut(s) 412
BsiSI CCGG 8 cut(s) 195, 204, 418, 436, 658, 672, 681, 710
BslFI GGGAC 3 cut(s) 97, 554, 707
BslI CCNNNNNNNGG 4 cut(s) 48, 301, 610, 630
BsmAI GTCTC 3 cut(s) 15, 718, 763
BsmFI GGGAC 3 cut(s) 97, 554, 707
BsnI GGCC 4 cut(s) 360, 417, 603, 776
Bso31I GGTCTC 1 cut(s) 763
BsoBI CYCGRG 1 cut(s) 412
Bsp1286I GDGCHC 1 cut(s) 738
Bsp13I TCCGGA 1 cut(s) 709
Bsp143I GATC 2 cut(s) 33, 141
BspANI GGCC 4 cut(s) 360, 417, 603, 776
BspCNI CTCAG 1 cut(s) 43
BspEI TCCGGA 1 cut(s) 709
BspFNI CGCG 4 cut(s) 218, 245, 363, 626
BspLI GGNNCC 3 cut(s) 208, 679, 695
BspMAI CTGCAG 1 cut(s) 732
BspTNI GGTCTC 1 cut(s) 763
BsrBI CCGCTC 2 cut(s) 277, 766
BsrFI RCCGGY 3 cut(s) 194, 203, 435
BsrI ACTGG 5 cut(s) 29, 58, 326, 816, 860
BssAI RCCGGY 3 cut(s) 194, 203, 435
BssECI CCNNGG 5 cut(s) 349, 361, 521, 624, 681
BssMI GATC 2 cut(s) 33, 141
BssNI GRCGYC 2 cut(s) 288, 486
Bst2UI CCWGG 2 cut(s) 442, 523
Bst4CI ACNGT 3 cut(s) 331, 586, 613
Bst6I CTCTTC 3 cut(s) 89, 155, 242
BstACI GRCGYC 2 cut(s) 288, 486
BstBAI YACGTR 1 cut(s) 718
BstC8I GCNNGC 3 cut(s) 184, 196, 339
BstDEI CTNAG 1 cut(s) 30
BstDSI CCRYGG 2 cut(s) 361, 624
BstEII GGTNACC 1 cut(s) 515
BstF5I GGATG 3 cut(s) 366, 450, 639
BstFNI CGCG 4 cut(s) 218, 245, 363, 626
BstHHI GCGC 2 cut(s) 220, 300
BstKTI GATC 2 cut(s) 36, 144
BstMAI GTCTC 3 cut(s) 15, 718, 763
BstMBI GATC 2 cut(s) 33, 141
BstMCI CGRYCG 1 cut(s) 361
BstMWI GCNNNNNNNGC 8 cut(s) 188, 204, 224, 360, 363, 414, 727, 820
BstNI CCWGG 2 cut(s) 442, 523
BstPI GGTNACC 1 cut(s) 515
BstSCI CCNGG 6 cut(s) 417, 440, 521, 657, 670, 680
BstSFI CTRYAG 1 cut(s) 728
BstUI CGCG 4 cut(s) 218, 245, 363, 626
BstV1I GCAGC 2 cut(s) 341, 420
BstX2I RGATCY 1 cut(s) 33
BstYI RGATCY 1 cut(s) 33
BstZI CGGCCG 1 cut(s) 358
BsuI GTATCC 1 cut(s) 574
BsuRI GGCC 4 cut(s) 360, 417, 603, 776
BtgI CCRYGG 2 cut(s) 361, 624
BtgZI GCGATG 1 cut(s) 157
BtrI CACGTC 1 cut(s) 556
BtsCI GGATG 3 cut(s) 366, 450, 639
BtsI GCAGTG 1 cut(s) 468
BtsIMutI CAGTG 2 cut(s) 65, 468
Cac8I GCNNGC 3 cut(s) 184, 196, 339
CaiI CAGNNNCTG 1 cut(s) 24
CciNI GCGGCCGC 1 cut(s) 358
CfoI GCGC 2 cut(s) 220, 300
Cfr10I RCCGGY 3 cut(s) 194, 203, 435
Cfr13I GGNCC 7 cut(s) 324, 415, 433, 438, 655, 678, 694
Cfr42I CCGCGG 2 cut(s) 364, 627
CseI GACGC 2 cut(s) 234, 475
Csp6I GTAC 3 cut(s) 121, 496, 598
CspAI ACCGGT 1 cut(s) 435
CviAII CATG 2 cut(s) 301, 781
CviQI GTAC 3 cut(s) 121, 496, 598
DdeI CTNAG 1 cut(s) 30
DpnI GATC 2 cut(s) 35, 143
DpnII GATC 2 cut(s) 33, 141
DraIII CACNNNGTG 1 cut(s) 94
DrdI GACNNNNNNGTC 1 cut(s) 755
DseDI GACNNNNNNGTC 1 cut(s) 755
EaeI YGGCCR 2 cut(s) 358, 601
EagI CGGCCG 1 cut(s) 358
Eam1104I CTCTTC 3 cut(s) 89, 155, 242
EarI CTCTTC 3 cut(s) 89, 155, 242
EciI GGCGGA 2 cut(s) 169, 214
Ecl136II GAGCTC 1 cut(s) 736
EclXI CGGCCG 1 cut(s) 358
Eco24I GRGCYC 1 cut(s) 738
Eco31I GGTCTC 1 cut(s) 763
Eco47I GGWCC 6 cut(s) 324, 433, 438, 655, 678, 694
Eco52I CGGCCG 1 cut(s) 358
Eco53kI GAGCTC 1 cut(s) 736
Eco88I CYCGRG 1 cut(s) 412
Eco91I GGTNACC 1 cut(s) 515
EcoICRI GAGCTC 1 cut(s) 736
EcoO109I RGGNCCY 1 cut(s) 694
EcoO65I GGTNACC 1 cut(s) 515
EcoRII CCWGG 2 cut(s) 440, 521
EcoT38I GRGCYC 1 cut(s) 738
FaeI CATG 2 cut(s) 304, 784
FaiI YATR 5 cut(s) 44, 46, 71, 302, 782
FaqI GGGAC 3 cut(s) 97, 554, 707
FatI CATG 2 cut(s) 300, 780
FauI CCCGC 3 cut(s) 191, 282, 759
Fnu4HI GCNGC 6 cut(s) 192, 355, 358, 361, 364, 409
FokI GGATG 3 cut(s) 353, 457, 646
FriOI GRGCYC 1 cut(s) 738
Fsp4HI GCNGC 6 cut(s) 192, 355, 358, 361, 364, 409
FspBI CTAG 1 cut(s) 53
GlaI GCGC 2 cut(s) 219, 299
GluI GCNGC 6 cut(s) 192, 355, 358, 361, 364, 409
GsaI CCCAGC 1 cut(s) 394
HaeIII GGCC 4 cut(s) 360, 417, 603, 776
HapII CCGG 8 cut(s) 195, 204, 418, 436, 658, 672, 681, 710
HgaI GACGC 2 cut(s) 234, 475
HhaI GCGC 2 cut(s) 220, 300
Hin1I GRCGYC 2 cut(s) 288, 486
Hin1II CATG 2 cut(s) 304, 784
Hin6I GCGC 2 cut(s) 218, 298
HinP1I GCGC 2 cut(s) 218, 298
HinfI GANTC 1 cut(s) 28
HpaII CCGG 8 cut(s) 195, 204, 418, 436, 658, 672, 681, 710
HphI GGTGA 4 cut(s) 193, 205, 527, 659
Hpy166II GTNNAC 3 cut(s) 316, 327, 580
Hpy188I TCNGA 3 cut(s) 33, 609, 763
Hpy188III TCNNGA 3 cut(s) 397, 710, 739
Hpy8I GTNNAC 3 cut(s) 316, 327, 580
Hpy99I CGWCG 6 cut(s) 290, 293, 386, 428, 491, 557
HpyAV CCTTC 6 cut(s) 89, 259, 398, 476, 586, 787
HpyCH4III ACNGT 3 cut(s) 331, 586, 613
HpyCH4IV ACGT 6 cut(s) 288, 461, 498, 555, 705, 717
HpyCH4V TGCA 2 cut(s) 703, 730
HpyF10VI GCNNNNNNNGC 8 cut(s) 188, 204, 224, 360, 363, 414, 727, 820
HpyF3I CTNAG 1 cut(s) 30
HpySE526I ACGT 6 cut(s) 288, 461, 498, 555, 705, 717
Hsp92I GRCGYC 2 cut(s) 288, 486
Hsp92II CATG 2 cut(s) 304, 784
HspAI GCGC 2 cut(s) 218, 298
Kpn2I TCCGGA 1 cut(s) 709
KroI GCCGGC 1 cut(s) 194
KroNI GCCGGC 1 cut(s) 196
KspI CCGCGG 2 cut(s) 364, 627
Kzo9I GATC 2 cut(s) 33, 141
LmnI GCTCC 4 cut(s) 212, 282, 733, 763
Lsp1109I GCAGC 2 cut(s) 341, 420
LweI GCATC 2 cut(s) 375, 851
MaeI CTAG 1 cut(s) 53
MaeII ACGT 6 cut(s) 288, 461, 498, 555, 705, 717
MaeIII GTNAC 5 cut(s) 211, 462, 499, 515, 769
MalI GATC 2 cut(s) 35, 143
MbiI CCGCTC 2 cut(s) 277, 766
MboI GATC 2 cut(s) 33, 141
MboII GAAGA 5 cut(s) 76, 142, 145, 229, 232
MflI RGATCY 1 cut(s) 33
MhlI GDGCHC 1 cut(s) 738
MlyI GAGTC 1 cut(s) 22
MroI TCCGGA 1 cut(s) 709
MroNI GCCGGC 1 cut(s) 194
MseI TTAA 1 cut(s) 665
MspA1I CMGCKG 3 cut(s) 363, 569, 626
MspI CCGG 8 cut(s) 195, 204, 418, 436, 658, 672, 681, 710
MspR9I CCNGG 6 cut(s) 419, 442, 523, 659, 672, 682
MvaI CCWGG 2 cut(s) 442, 523
MvnI CGCG 4 cut(s) 218, 245, 363, 626
MwoI GCNNNNNNNGC 8 cut(s) 188, 204, 224, 360, 363, 414, 727, 820
NaeI GCCGGC 1 cut(s) 196
NciI CCSGG 4 cut(s) 419, 659, 672, 682
NdeII GATC 2 cut(s) 33, 141
NgoMIV GCCGGC 1 cut(s) 194
NlaIII CATG 2 cut(s) 304, 784
NlaIV GGNNCC 3 cut(s) 208, 679, 695
NmeAIII GCCGAG 1 cut(s) 330
NmuCI GTSAC 4 cut(s) 211, 499, 515, 769
NotI GCGGCCGC 1 cut(s) 358
PcsI WCGNNNNNNNCGW 2 cut(s) 495, 582
PdiI GCCGGC 1 cut(s) 196
PflFI GACNNNGTC 1 cut(s) 290
PflMI CCANNNNNTGG 1 cut(s) 301
PfoI TCCNGGA 1 cut(s) 440
PinAI ACCGGT 1 cut(s) 435
PkrI GCNGC 6 cut(s) 193, 356, 359, 362, 365, 410
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
Ppu21I YACGTR 1 cut(s) 718
PpuMI RGGWCCY 1 cut(s) 694
Psp124BI GAGCTC 1 cut(s) 738
Psp5II RGGWCCY 1 cut(s) 694
Psp6I CCWGG 2 cut(s) 440, 521
PspEI GGTNACC 1 cut(s) 515
PspFI CCCAGC 1 cut(s) 390
PspGI CCWGG 2 cut(s) 440, 521
PspN4I GGNNCC 3 cut(s) 208, 679, 695
PspPI GGNCC 7 cut(s) 324, 415, 433, 438, 655, 678, 694
PspPPI RGGWCCY 1 cut(s) 694
PstI CTGCAG 1 cut(s) 732
PstNI CAGNNNCTG 1 cut(s) 24
PsuI RGATCY 1 cut(s) 33
PsyI GACNNNGTC 1 cut(s) 290
RsaI GTAC 3 cut(s) 122, 497, 599
RsaNI GTAC 3 cut(s) 121, 496, 598
SacI GAGCTC 1 cut(s) 738
SacII CCGCGG 2 cut(s) 364, 627
SaqAI TTAA 1 cut(s) 665
SatI GCNGC 6 cut(s) 192, 355, 358, 361, 364, 409
Sau3AI GATC 2 cut(s) 33, 141
Sau96I GGNCC 7 cut(s) 324, 415, 433, 438, 655, 678, 694
SchI GAGTC 1 cut(s) 22
ScrFI CCNGG 6 cut(s) 419, 442, 523, 659, 672, 682
SduI GDGCHC 1 cut(s) 738
SfaNI GCATC 2 cut(s) 375, 851
SfcI CTRYAG 1 cut(s) 728
Sfr303I CCGCGG 2 cut(s) 364, 627
SgrBI CCGCGG 2 cut(s) 364, 627
SinI GGWCC 6 cut(s) 324, 433, 438, 655, 678, 694
SmlI CTYRAG 2 cut(s) 395, 737
SmoI CTYRAG 2 cut(s) 395, 737
SspMI CTAG 1 cut(s) 53
SstI GAGCTC 1 cut(s) 738
StyD4I CCNGG 6 cut(s) 417, 440, 521, 657, 670, 680
TaaI ACNGT 3 cut(s) 331, 586, 613
TaiI ACGT 6 cut(s) 291, 464, 501, 558, 708, 720
TaqI TCGA 3 cut(s) 135, 345, 552
TauI GCSGC 4 cut(s) 194, 360, 363, 366
Tru1I TTAA 1 cut(s) 665
Tru9I TTAA 1 cut(s) 665
TscAI CASTG 2 cut(s) 65, 475
TseFI GTSAC 4 cut(s) 211, 499, 515, 769
TseI GCWGC 2 cut(s) 354, 408
Tsp45I GTSAC 4 cut(s) 211, 499, 515, 769
TspDTI ATGAA 1 cut(s) 769
TspGWI ACGGA 2 cut(s) 199, 301
TspRI CASTG 2 cut(s) 65, 475
Tth111I GACNNNGTC 1 cut(s) 290
Van91I CCANNNNNTGG 1 cut(s) 301
VpaK11BI GGWCC 6 cut(s) 324, 433, 438, 655, 678, 694
XspI CTAG 1 cut(s) 53
ZraI GACGTC 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.