Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004789

Physical Location & Seq

Genomic Coordinates Forward (+)

13857757 .. 13865311

Gene Structure 7555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0149300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3354 bp

ATGGAGTTCGAGGTGAAATTAGTCGGTGCCATAGAGGACTGCTACGTCTCCCTCCCTCTCCCCCTAATCCAAACCCTCCACTCCTCCTCCCCATCTCTCCCTCCCGTCCTCGCCCTCGACCTCCGCTCCTCCTCAAACGACGACCGCTGGACCGTCGCTTGGTCCGGCGCCACCTCCTCTTCTCCCGCAATCGAGGTAGCTCAGCAATTCGGAGAGTGTATTTCGCTGCCGAATCGTTCTAGGGTTCAGGTGCGAGCTCTTTCGAATGTGGCGAAAGCTACTTTGGTGACGATCGAGCCGTGTACTGAGGATGATTGGGAGGTCATGGAGCTTAACTCCGAGCTTGCTGAGGCTGCTATATTGAATCAGGTGAGGATTGTTCATGAAGGAATGAAGTTTCCTTTGTGGTTGCATGGCCGCACCACCATTACATTTCTTGTTGTTTCAACCTTTCCCAAGAAATCGGTGGTGCAACTGGTGCCAGGGACTGAAGTCGCAGTTGCTCCAAAGAGACGCACGAATGTCAACTCGAATGGGGATGGAATGCTCTCGTCTAATATTTCAAAAGCACTACTCCGTGTTCAAGATGCAGACAGGAGATTAGTTCACCAAAGTAATGTGAAAGGTGTTGAGCTTGGAGTTGTTCTCACTTCTGTTGCTATTATTCACCCAGAAACAGCAAAAATGTTCTCATTACAGTCTCTTGAGTTAGTAGCTGTTGTGCCGAGATTGGTACCAAAAGAAAGCATGAAAAATTCTGAAAGTGATGGGTTGAGAATAAGAAGTTCAACAACAAAGGAATCTAGTGTTAGAGTTCCAAATGACAAAAAGGACAATCGTCAAGCAGTAGTTCGGCTGTTGATTTCCGACTCAGTTGCTAAAGGGCATCTAATGATTGCCCAGTCTCTTCGCCTCTACCTTAGGGCTGGTTTGCATTCATGGGTTTATTTAAAGGGATGTGGTGCTATTTTGAAGAATAACATGCCAATGTGTTCACTTTCACCCTGCCACTTCAAGATATCTCCTAAAGAGAAAGCTGTTGAAAGAAATGGTTTACAAGTTCTTGACAGGCATATAACTCGTAAGAAGAATGACATGCTTCTAACACCTGGCTCAAGCACCTATATAGATGTTGTTGATTGGTCAACCCATGACAAAGTTGTTGCTGATTTTTCTTGCAAAGAGGATGAAGAACCTGCCCATCAGTCTGACAAGGGAAATGGGGTAGAAATTCTACTTAAAGCTTGGATCCTTGCACAGTTAGATGCTATTACTTCCAAAGCAGGAGTAGAAGTTAATTCATTGATTTTGGGAAATGAAACTTTGCTTCATTTTGAAGTGAAAGGGAACCAGTCTGGGATTGAGGAATCATCAAATGATTTCCTGGCAAACAATAATATGAATCCTGAAGTTCCAGTTGAAGTCTTGTATGTATTGACAATTTCCAAGGAATCTCAATGTGGCGGAAATGTGTATGAGCTTGTATTTGATGAAAGAAACAAAGGCAACAACAATAATCTTGACTCACTTGAAAAGCATATGGGTGAACCTGTGTCCTTTTATTCAGTAAGAGAAAGAATGTCTGACAAAGATATTACTTCTGATATATCTTCCTTGAGCTGGATGGGGACAACTGCTTCTGAAGTTTTAAATAGAATGTTGGTGTTACTAACTCCTGCTTATGGGGTATGGTTTAGTTCACATAATCTTCCTCTCCCTGGACATGTTCTGATACATGGACCTCCGGGTTCTGGAAAGACATTATTAGCGAGAACTGTTGGAAAATGTCTTGAGGAACATGGAGGCCTTCTAGCACACATAGTTTATGTATGCTGTTCTCAACTTGCCATGGAAAAGGCCTTGACCGTTCGCCAAGCACTCTCTAGCTACATATCTGAGGCTTTAGATCATGCACCATCTCTTGTAATTCTTGACGATCTTGATAGCATTGTTTCATCCTCTTCAGACTCAGAAGGATCTCAACCTTCAACTTCTGTTGTTGCACTAGCAGAATTTCTCATAGACATTATGGATGAATATGGGGAAAAAAGGAAGATCTCCTGTGGAATTGGCCCGCTTGCTTTCATAGCTTCCTCAAAGTCATTAGAGAGTATGCCACAGTCATTGAGCTCTTCAGGTAGGTTTGACTTTCATGTCCAAATGCCTGCTCCTGCTGTCTCAGAACGTGCAGCCATTTTGAAACATGAAATTCGGAGGCGTTGCTTGCAATGTTCTGATGAAATCTTACAAGATGTAGCTTCCAAATGTGATGGCTATGATGCATATGATCTGGAAATCTTGGTTGATAGAACTGTCCATGCCGCCATAGGTCGTTTTCTGCCTTATCAGTTTGCTTCTGATGAGCGTGAAAAACCCACTTTACTTGTGGATGATTTCTCTCGGGCAATGCATGAGTTCCTTCCGGTTGCCATGCGTGACATCACTAAGTCTGCTTCTGAAGGGGGTCGTTCTGGGTGGGATGACGTTGGTGGTCTTGTTGACATTTGCAATGCAATTAAAGAGATGATTGAATTGCCTTCAAAATTCCCAAATATCTTTGCAAAAACTCCTTTAAGGTTGCGGTCAAATGTATTATTGTATGGGCCACCTGGCTGTGGAAAAACGCATATAGTTGGTTCTGCTGCTGCTGCCTGTTCACTACGATTTATATCAGTCAAAGGACCTGAGCTGTTGAATAAATACATTGGTGCTTCTGAGCAAGCTGTTCGGGATATATTCTCCAAAGCAGCTGCTGCAGCACCATGCCTTCTCTTTTTTGACGAATTTGATTCTATTGCCCCAAAAAGGGGACATGACAATACTGGAGTAACTGATCGTGTTGTCAATCAGTTTCTGACTGAATTGGATGGTGTTGAAGTTTTGACTGGTGTTTTTGTGTTTGCTGCAACAAGTAGACCAGATTTGCTTGATGCTGCACTTCTGAGACCTGGTAGGCTGGATCGCCTTCTGTTTTGTGATTTTCCATCTTCGCGTGAAAGGTTGGATATTCTAAGAGTCCTTTCGAAAAAGCTACCACTGGATGGTGATGTGGATTTATCTGCCATAGCTGATATGACTGAGGGATATAGTGGGGCTGACCTTCAAGCACTTCTCTCAGATGCTCAGCTTGCAGCAGTGCATGAAATTCTGGATGGTACATATACCAATGATCCAGGGAGAAAGCCAGTTATTTCGGATGCACTCTTGAAGTCTACTGCTTCCAGGACGAGACCATCTGTTTCTGAGGCTGAGAAGCAAAAATTTTACAACATTTACAGCCAGTTCTTGGATTCAAAAAGATCTGTTGCCGCACAGTCAAGAGATGCAAAAGGCAAGAGAGCAACCCTAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006891 GO:0007049 GO:0008150 GO:0009987 GO:0012505 GO:0016043 GO:0016192 GO:0016197 GO:0016482 GO:0022402 GO:0022607 GO:0030008 GO:0031410 GO:0031982 GO:0031984 GO:0032506 GO:0032991 GO:0034498 GO:0042147 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051301 GO:0051641 GO:0051649 GO:0061640 GO:0071840 GO:0097708 GO:0098791 GO:0099023 GO:1902410 GO:1903047 GO:1990071

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Foie-gras_1 TRAPPC10

Protein Analysis

1117

Amino Acids

122.1

Weight (kDa)

5.79

Isoelectric Point (pI)

51.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEX-1N	PF09262	96 - 169	7.3e-27	Peroxisome biogenesis factor 1, N-terminal
AAA_16	PF13191	571 - 670	1.8e-06	AAA ATPase domain
NPHP3_N	PF24883	574 - 672	1.8e-06	Nephrocystin 3, N-terminal
AAA	PF00004	576 - 722	8.3e-16	ATPase family associated with various cellular activities (AAA)
AAA	PF00004	864 - 992	2.4e-38	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	1016 - 1056	6.4e-13	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54440 AT5G54440 AT5G54440
fragaria_vesca	FvH4_3g20750 FvH4_3g20750 FvH4_3g20750 FvH4_3g20750
malus_domestica	MD03G1222200.v1.1 MD11G1239600.v1.1
prunus_persica	Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1
pyrus_communis	pycom03g17080 pycom11g21130
rosa_chinensis	RchiOBHm_Chr5g0034971
rosa_laevigata	RLG00000033586 RLG00000033589
rosa_multiflora	Rmu_co8343959.1_g000001 Rmu_sc0000879.1_g000039 Rmu_sc0021290.1_g000001
rosa_roxburghii	Rroxscaffold_1G00045410
rosa_rugosa	Rorug05G0149100 Rorug05G0149200 Rorug05G0149300
rosa_samantha	Rh5AG242200 Rh5BG241800 Rh5CG273300 Rh5DG250400
rosa_wichuraiana	Rw5G022120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	44, 2153
Acc36I	ACCTGC	1 cut(s)	1204
Acc65I	GGTACC	1 cut(s)	733
AccB1I	GGYRCC	4 cut(s)	26, 167, 478, 733
AccB7I	CCANNNNNTGG	2 cut(s)	3041, 3286
AccBSI	CCGCTC	1 cut(s)	126
AccI	GTMKAC	2 cut(s)	2914, 3212
AccII	CGCG	1 cut(s)	2992
AciI	CCGC	9 cut(s)	124, 145, 186, 418, 1464, 2075, 2322, 2581, 3309
AclWI	GGATC	5 cut(s)	1243, 1256, 1984, 2967, 3164
AcoI	YGGCCR	1 cut(s)	415
AcsI	RAATTY	8 cut(s)	754, 1230, 2012, 2208, 2543, 2783, 3144, 3260
AcuI	CTGAAG	6 cut(s)	510, 1428, 1662, 1947, 2118, 2478
AcyI	GRCGYC	1 cut(s)	168
AfaI	GTAC	3 cut(s)	304, 735, 3157
AflIII	ACRYGT	1 cut(s)	1723
AjnI	CCWGG	8 cut(s)	481, 1108, 1383, 1717, 2608, 2947, 3172, 3221
AjuI	GAANNNNNNNTTGG	2 cut(s)	266, 298
Alw21I	GWGCWC	2 cut(s)	259, 2132
Alw26I	GTCTC	7 cut(s)	52, 505, 705, 909, 2182, 2938, 3223
AlwI	GGATC	5 cut(s)	1243, 1256, 1984, 2967, 3164
AlwNI	CAGNNNCTG	3 cut(s)	488, 2753, 2854
Ama87I	CYCGRG	1 cut(s)	2400
AoxI	GGCC	5 cut(s)	415, 1804, 1857, 2071, 2603
ApoI	RAATTY	8 cut(s)	754, 1230, 2012, 2208, 2543, 2783, 3144, 3260
Asp718I	GGTACC	1 cut(s)	733
AspLEI	GCGC	1 cut(s)	170
AspS9I	GGNCC	6 cut(s)	150, 162, 1739, 2072, 2603, 2681
AsuC2I	CCSGG	1 cut(s)	1746
AsuHPI	GGTGA	8 cut(s)	25, 298, 382, 599, 659, 993, 1556, 3056
AsuII	TTCGAA	2 cut(s)	263, 3023
AvaI	CYCGRG	1 cut(s)	2400
AvaII	GGWCC	4 cut(s)	150, 162, 1739, 2681
AxyI	CCTNAGG	1 cut(s)	920
BamHI	GGATCC	1 cut(s)	1248
BanI	GGYRCC	4 cut(s)	26, 167, 478, 733
BanII	GRGCYC	2 cut(s)	259, 2132
Bbv12I	GWGCWC	2 cut(s)	259, 2132
BbvCI	CCTCAGC	1 cut(s)	348
BceAI	ACGGC	1 cut(s)	283
BcgI	CGANNNNNNTGC	6 cut(s)	857, 891, 1061, 1095, 2708, 2742
BciT130I	CCWGG	8 cut(s)	483, 1110, 1385, 1719, 2610, 2949, 3174, 3223
BcnI	CCSGG	1 cut(s)	1746
BcoDI	GTCTC	7 cut(s)	52, 505, 705, 909, 2182, 2938, 3223
BfaI	CTAG	6 cut(s)	240, 804, 1811, 1884, 2006, 3347
BfmI	CTRYAG	1 cut(s)	2754
BfoI	RGCGCY	1 cut(s)	171
BfuAI	ACCTGC	1 cut(s)	1204
BglII	AGATCT	2 cut(s)	2055, 3299
BlpI	GCTNAGC	2 cut(s)	201, 3123
Bme1390I	CCNGG	9 cut(s)	483, 1110, 1385, 1719, 1746, 2610, 2949, 3174, 3223
Bme18I	GGWCC	4 cut(s)	150, 162, 1739, 2681
BmeT110I	CYCGRG	1 cut(s)	2400
BmgT120I	GGNCC	6 cut(s)	150, 162, 1739, 2072, 2603, 2681
BmiI	GGNNCC	6 cut(s)	28, 169, 480, 735, 1250, 1349
BmrFI	CCNGG	9 cut(s)	483, 1110, 1385, 1719, 1746, 2610, 2949, 3174, 3223
BmrI	ACTGGG	1 cut(s)	895
BmsI	GCATC	8 cut(s)	577, 895, 1255, 2269, 2920, 3109, 3187, 3313
BmuI	ACTGGG	1 cut(s)	895
BoxI	GACNNNNGTC	2 cut(s)	491, 837
BplI	GAGNNNNNCTC	4 cut(s)	320, 352, 630, 662
BpmI	CTGGAG	1 cut(s)	2844
Bpu10I	CCTNAGC	2 cut(s)	348, 2685
Bpu1102I	GCTNAGC	2 cut(s)	201, 3123
Bpu14I	TTCGAA	2 cut(s)	263, 3023
BpuEI	CTTGAG	4 cut(s)	725, 1099, 1636, 1811
BpuMI	CCSGG	1 cut(s)	1746
BsaBI	GATNNNNATC	1 cut(s)	2668
BsaHI	GRCGYC	1 cut(s)	168
BsaI	GGTCTC	2 cut(s)	2938, 3223
BsaJI	CCNNGG	5 cut(s)	482, 1446, 1717, 1848, 3173
BsaWI	WCCGGW	1 cut(s)	2422
BsaXI	ACNNNNNCTCC	6 cut(s)	71, 101, 110, 140, 1278, 1308
Bse1I	ACTGG	9 cut(s)	480, 901, 1351, 1415, 2827, 2890, 3042, 3185, 3280
Bse21I	CCTNAGG	1 cut(s)	920
Bse3DI	GCAATG	3 cut(s)	2234, 2412, 2515
Bse8I	GATNNNNATC	1 cut(s)	2668
BseBI	CCWGG	8 cut(s)	483, 1110, 1385, 1719, 2610, 2949, 3174, 3223
BseDI	CCNNGG	5 cut(s)	482, 1446, 1717, 1848, 3173
BseJI	GATNNNNATC	1 cut(s)	2668
BseMI	GCAATG	3 cut(s)	2234, 2412, 2515
BseNI	ACTGG	9 cut(s)	480, 901, 1351, 1415, 2827, 2890, 3042, 3185, 3280
BseRI	GAGGAG	5 cut(s)	73, 76, 118, 121, 166
BsgI	GTGCAG	2 cut(s)	2208, 2919
Bsh1236I	CGCG	1 cut(s)	2992
Bsh1285I	CGRYCG	2 cut(s)	145, 294
BshFI	GGCC	5 cut(s)	417, 1806, 1859, 2073, 2605
BshNI	GGYRCC	4 cut(s)	26, 167, 478, 733
BsiEI	CGRYCG	2 cut(s)	145, 294
BsiHKAI	GWGCWC	2 cut(s)	259, 2132
BsiHKCI	CYCGRG	1 cut(s)	2400
BsiSI	CCGG	3 cut(s)	165, 1745, 2423
BslFI	GGGAC	3 cut(s)	499, 1642, 2823
BsmAI	GTCTC	7 cut(s)	52, 505, 705, 909, 2182, 2938, 3223
BsmBI	CGTCTC	2 cut(s)	52, 505
BsmFI	GGGAC	3 cut(s)	499, 1642, 2823
BsmI	GAATGC	2 cut(s)	549, 934
BsnI	GGCC	5 cut(s)	417, 1806, 1859, 2073, 2605
Bso31I	GGTCTC	2 cut(s)	2938, 3223
BsoBI	CYCGRG	1 cut(s)	2400
Bsp119I	TTCGAA	2 cut(s)	263, 3023
Bsp1286I	GDGCHC	2 cut(s)	259, 2132
Bsp1720I	GCTNAGC	2 cut(s)	201, 3123
Bsp19I	CCATGG	1 cut(s)	1848
BspACI	CCGC	9 cut(s)	124, 145, 186, 418, 1464, 2075, 2322, 2581, 3309
BspANI	GGCC	5 cut(s)	417, 1806, 1859, 2073, 2605
BspFNI	CGCG	1 cut(s)	2992
BspHI	TCATGA	1 cut(s)	382
BspLI	GGNNCC	6 cut(s)	28, 169, 480, 735, 1250, 1349
BspMAI	CTGCAG	1 cut(s)	2758
BspMI	ACCTGC	1 cut(s)	1204
BspPI	GGATC	5 cut(s)	1243, 1256, 1984, 2967, 3164
BspQI	GCTCTTC	1 cut(s)	2137
BspT104I	TTCGAA	2 cut(s)	263, 3023
BspT107I	GGYRCC	4 cut(s)	26, 167, 478, 733
BspTNI	GGTCTC	2 cut(s)	2938, 3223
BsrBI	CCGCTC	1 cut(s)	126
BsrDI	GCAATG	3 cut(s)	2234, 2412, 2515
BsrI	ACTGG	9 cut(s)	480, 901, 1351, 1415, 2827, 2890, 3042, 3185, 3280
BssECI	CCNNGG	5 cut(s)	482, 1446, 1717, 1848, 3173
BssNI	GRCGYC	1 cut(s)	168
BssT1I	CCWWGG	2 cut(s)	1446, 1848
Bst2UI	CCWGG	8 cut(s)	483, 1110, 1385, 1719, 2610, 2949, 3174, 3223
Bst4CI	ACNGT	8 cut(s)	154, 699, 1260, 1777, 1867, 2121, 2314, 3315
Bst6I	CTCTTC	4 cut(s)	184, 912, 1966, 2137
BstACI	GRCGYC	1 cut(s)	168
BstAPI	GCANNNNNTGC	2 cut(s)	478, 2753
BstBI	TTCGAA	2 cut(s)	263, 3023
BstC8I	GCNNGC	8 cut(s)	255, 345, 2075, 2079, 2166, 2225, 2721, 3129
BstDSI	CCRYGG	1 cut(s)	1848
BstFNI	CGCG	1 cut(s)	2992
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	170
BstMAI	GTCTC	7 cut(s)	52, 505, 705, 909, 2182, 2938, 3223
BstMCI	CGRYCG	2 cut(s)	145, 294
BstMWI	GCNNNNNNNGC	9 cut(s)	353, 478, 2087, 2224, 2648, 2753, 2756, 3128, 3347
BstNI	CCWGG	8 cut(s)	483, 1110, 1385, 1719, 2610, 2949, 3174, 3223
BstNSI	RCATGY	3 cut(s)	985, 1099, 1727
BstPAI	GACNNNNGTC	2 cut(s)	491, 837
BstSCI	CCNGG	9 cut(s)	481, 1108, 1383, 1717, 1744, 2608, 2947, 3172, 3221
BstSFI	CTRYAG	1 cut(s)	2754
BstUI	CGCG	1 cut(s)	2992
BstX2I	RGATCY	4 cut(s)	1248, 1976, 2055, 3299
BstYI	RGATCY	4 cut(s)	1248, 1976, 2055, 3299
Bsu36I	CCTNAGG	1 cut(s)	920
BsuRI	GGCC	5 cut(s)	417, 1806, 1859, 2073, 2605
BtgI	CCRYGG	1 cut(s)	1848
BtsI	GCAGTG	1 cut(s)	3141
BtsIMutI	CAGTG	2 cut(s)	3035, 3141
BveI	ACCTGC	1 cut(s)	1204
Cac8I	GCNNGC	8 cut(s)	255, 345, 2075, 2079, 2166, 2225, 2721, 3129
CaiI	CAGNNNCTG	3 cut(s)	488, 2753, 2854
CciI	TCATGA	1 cut(s)	382
CfoI	GCGC	1 cut(s)	170
Cfr13I	GGNCC	6 cut(s)	150, 162, 1739, 2072, 2603, 2681
CseI	GACGC	1 cut(s)	522
CsiI	ACCWGGT	1 cut(s)	2947
Csp6I	GTAC	3 cut(s)	303, 734, 3156
CspCI	CAANNNNNGTGG	4 cut(s)	2106, 2141, 2365, 2400
CviQI	GTAC	3 cut(s)	303, 734, 3156
DinI	GGCGCC	1 cut(s)	169
DraI	TTTAAA	2 cut(s)	951, 1650
DrdI	GACNNNNNNGTC	2 cut(s)	44, 2153
DseDI	GACNNNNNNGTC	2 cut(s)	44, 2153
EaeI	YGGCCR	1 cut(s)	415
Eam1104I	CTCTTC	4 cut(s)	184, 912, 1966, 2137
EarI	CTCTTC	4 cut(s)	184, 912, 1966, 2137
EciI	GGCGGA	1 cut(s)	1479
Ecl136II	GAGCTC	2 cut(s)	257, 2130
Eco130I	CCWWGG	2 cut(s)	1446, 1848
Eco147I	AGGCCT	2 cut(s)	1806, 1859
Eco24I	GRGCYC	2 cut(s)	259, 2132
Eco31I	GGTCTC	2 cut(s)	2938, 3223
Eco32I	GATATC	1 cut(s)	1020
Eco47I	GGWCC	4 cut(s)	150, 162, 1739, 2681
Eco53kI	GAGCTC	2 cut(s)	257, 2130
Eco57I	CTGAAG	6 cut(s)	510, 1428, 1662, 1947, 2118, 2478
Eco81I	CCTNAGG	1 cut(s)	920
Eco88I	CYCGRG	1 cut(s)	2400
EcoICRI	GAGCTC	2 cut(s)	257, 2130
EcoO109I	RGGNCCY	1 cut(s)	2681
EcoRII	CCWGG	8 cut(s)	481, 1108, 1383, 1717, 2608, 2947, 3172, 3221
EcoRV	GATATC	1 cut(s)	1020
EcoT14I	CCWWGG	2 cut(s)	1446, 1848
EcoT22I	ATGCAT	2 cut(s)	2284, 2412
EcoT38I	GRGCYC	2 cut(s)	259, 2132
EgeI	GGCGCC	1 cut(s)	169
EheI	GGCGCC	1 cut(s)	169
ErhI	CCWWGG	2 cut(s)	1446, 1848
Esp3I	CGTCTC	2 cut(s)	52, 505
FaqI	GGGAC	3 cut(s)	499, 1642, 2823
FauI	CCCGC	2 cut(s)	193, 2082
FauNDI	CATATG	2 cut(s)	1539, 2284
FblI	GTMKAC	2 cut(s)	2914, 3212
FriOI	GRGCYC	2 cut(s)	259, 2132
FspBI	CTAG	6 cut(s)	240, 804, 1811, 1884, 2006, 3347
GlaI	GCGC	1 cut(s)	169
GsuI	CTGGAG	1 cut(s)	2844
HaeII	RGCGCY	1 cut(s)	171
HaeIII	GGCC	5 cut(s)	417, 1806, 1859, 2073, 2605
HapII	CCGG	3 cut(s)	165, 1745, 2423
HgaI	GACGC	1 cut(s)	522
HhaI	GCGC	1 cut(s)	170
Hin1I	GRCGYC	1 cut(s)	168
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HincII	GTYRAC	3 cut(s)	526, 1146, 2500
HindII	GTYRAC	3 cut(s)	526, 1146, 2500
HindIII	AAGCTT	1 cut(s)	1242
HpaII	CCGG	3 cut(s)	165, 1745, 2423
HphI	GGTGA	8 cut(s)	25, 298, 382, 599, 659, 993, 1556, 3056
Hpy99I	CGWCG	2 cut(s)	143, 158
HpyCH4III	ACNGT	8 cut(s)	154, 699, 1260, 1777, 1867, 2121, 2314, 3315
HpyCH4IV	ACGT	3 cut(s)	45, 2185, 2484
HpyF10VI	GCNNNNNNNGC	9 cut(s)	353, 478, 2087, 2224, 2648, 2753, 2756, 3128, 3347
HpySE526I	ACGT	3 cut(s)	45, 2185, 2484
Hsp92I	GRCGYC	1 cut(s)	168
HspAI	GCGC	1 cut(s)	168
KasI	GGCGCC	1 cut(s)	167
KpnI	GGTACC	1 cut(s)	737
LguI	GCTCTTC	1 cut(s)	2137
LmnI	GCTCC	4 cut(s)	131, 328, 508, 2173
LweI	GCATC	8 cut(s)	577, 895, 1255, 2269, 2920, 3109, 3187, 3313
MabI	ACCWGGT	1 cut(s)	2947
MaeI	CTAG	6 cut(s)	240, 804, 1811, 1884, 2006, 3347
MaeII	ACGT	3 cut(s)	45, 2185, 2484
MaeIII	GTNAC	4 cut(s)	286, 1665, 2435, 2827
MbiI	CCGCTC	1 cut(s)	126
MflI	RGATCY	4 cut(s)	1248, 1976, 2055, 3299
MhlI	GDGCHC	2 cut(s)	259, 2132
Mly113I	GGCGCC	1 cut(s)	168
MlyI	GAGTC	4 cut(s)	863, 1517, 1961, 3024
MmeI	TCCRAC	3 cut(s)	891, 1759, 2982
Mph1103I	ATGCAT	2 cut(s)	2284, 2412
MseI	TTAA	7 cut(s)	333, 950, 1239, 1296, 1649, 2517, 2573
MslI	CAYNNNNRTG	2 cut(s)	986, 1542
MspA1I	CMGCKG	2 cut(s)	147, 2750
MspI	CCGG	3 cut(s)	165, 1745, 2423
MspR9I	CCNGG	9 cut(s)	483, 1110, 1385, 1719, 1746, 2610, 2949, 3174, 3223
Mva1269I	GAATGC	2 cut(s)	549, 934
MvaI	CCWGG	8 cut(s)	483, 1110, 1385, 1719, 2610, 2949, 3174, 3223
MvnI	CGCG	1 cut(s)	2992
MwoI	GCNNNNNNNGC	9 cut(s)	353, 478, 2087, 2224, 2648, 2753, 2756, 3128, 3347
NarI	GGCGCC	1 cut(s)	168
NciI	CCSGG	1 cut(s)	1746
NcoI	CCATGG	1 cut(s)	1848
NdeI	CATATG	2 cut(s)	1539, 2284
NlaIV	GGNNCC	6 cut(s)	28, 169, 480, 735, 1250, 1349
NmeAIII	GCCGAG	1 cut(s)	750
NmuCI	GTSAC	2 cut(s)	286, 2435
NsiI	ATGCAT	2 cut(s)	2284, 2412
NspI	RCATGY	3 cut(s)	985, 1099, 1727
NspV	TTCGAA	2 cut(s)	263, 3023
PagI	TCATGA	1 cut(s)	382
PceI	AGGCCT	2 cut(s)	1806, 1859
PciI	ACATGT	1 cut(s)	1723
PciSI	GCTCTTC	1 cut(s)	2137
PcsI	WCGNNNNNNNCGW	2 cut(s)	269, 296
PctI	GAATGC	2 cut(s)	549, 934
PfeI	GAWTC	8 cut(s)	232, 364, 800, 1367, 1402, 1451, 2789, 3290
PflMI	CCANNNNNTGG	2 cut(s)	3041, 3286
PfoI	TCCNGGA	1 cut(s)	3221
Ple19I	CGATCG	1 cut(s)	294
PleI	GAGTC	4 cut(s)	863, 1517, 1961, 3023
PluTI	GGCGCC	1 cut(s)	171
PpsI	GAGTC	4 cut(s)	863, 1517, 1961, 3023
PpuMI	RGGWCCY	1 cut(s)	2681
PscI	ACATGT	1 cut(s)	1723
PshAI	GACNNNNGTC	2 cut(s)	491, 837
Psp124BI	GAGCTC	2 cut(s)	259, 2132
Psp5II	RGGWCCY	1 cut(s)	2681
Psp6I	CCWGG	8 cut(s)	481, 1108, 1383, 1717, 2608, 2947, 3172, 3221
PspGI	CCWGG	8 cut(s)	481, 1108, 1383, 1717, 2608, 2947, 3172, 3221
PspN4I	GGNNCC	6 cut(s)	28, 169, 480, 735, 1250, 1349
PspPI	GGNCC	6 cut(s)	150, 162, 1739, 2072, 2603, 2681
PspPPI	RGGWCCY	1 cut(s)	2681
PstI	CTGCAG	1 cut(s)	2758
PstNI	CAGNNNCTG	3 cut(s)	488, 2753, 2854
PsuI	RGATCY	4 cut(s)	1248, 1976, 2055, 3299
PvuI	CGATCG	1 cut(s)	294
PvuII	CAGCTG	1 cut(s)	2750
RsaI	GTAC	3 cut(s)	304, 735, 3157
RsaNI	GTAC	3 cut(s)	303, 734, 3156
RseI	CAYNNNNRTG	2 cut(s)	986, 1542
SacI	GAGCTC	2 cut(s)	259, 2132
SapI	GCTCTTC	1 cut(s)	2137
SaqAI	TTAA	7 cut(s)	333, 950, 1239, 1296, 1649, 2517, 2573
Sau96I	GGNCC	6 cut(s)	150, 162, 1739, 2072, 2603, 2681
SchI	GAGTC	4 cut(s)	863, 1517, 1961, 3024
ScrFI	CCNGG	9 cut(s)	483, 1110, 1385, 1719, 1746, 2610, 2949, 3174, 3223
SduI	GDGCHC	2 cut(s)	259, 2132
SexAI	ACCWGGT	1 cut(s)	2947
SfaNI	GCATC	8 cut(s)	577, 895, 1255, 2269, 2920, 3109, 3187, 3313
SfcI	CTRYAG	1 cut(s)	2754
SfoI	GGCGCC	1 cut(s)	169
SfuI	TTCGAA	2 cut(s)	263, 3023
SinI	GGWCC	4 cut(s)	150, 162, 1739, 2681
SmiMI	CAYNNNNRTG	2 cut(s)	986, 1542
SmlI	CTYRAG	4 cut(s)	704, 1114, 1615, 1790
SmoI	CTYRAG	4 cut(s)	704, 1114, 1615, 1790
SseBI	AGGCCT	2 cut(s)	1806, 1859
SsiI	CCGC	9 cut(s)	124, 145, 186, 418, 1464, 2075, 2322, 2581, 3309
SspDI	GGCGCC	1 cut(s)	167
SspI	AATATT	1 cut(s)	559
SspMI	CTAG	6 cut(s)	240, 804, 1811, 1884, 2006, 3347
SstI	GAGCTC	2 cut(s)	259, 2132
StuI	AGGCCT	2 cut(s)	1806, 1859
StyD4I	CCNGG	9 cut(s)	481, 1108, 1383, 1717, 1744, 2608, 2947, 3172, 3221
StyI	CCWWGG	2 cut(s)	1446, 1848
TaaI	ACNGT	8 cut(s)	154, 699, 1260, 1777, 1867, 2121, 2314, 3315
TaiI	ACGT	3 cut(s)	48, 2188, 2487
TaqI	TCGA	7 cut(s)	9, 117, 192, 263, 294, 530, 3023
TatI	WGTACW	1 cut(s)	302
TauI	GCSGC	3 cut(s)	420, 2324, 3311
TfiI	GAWTC	8 cut(s)	232, 364, 800, 1367, 1402, 1451, 2789, 3290
Tru1I	TTAA	7 cut(s)	333, 950, 1239, 1296, 1649, 2517, 2573
Tru9I	TTAA	7 cut(s)	333, 950, 1239, 1296, 1649, 2517, 2573
TscAI	CASTG	2 cut(s)	3042, 3141
TseFI	GTSAC	2 cut(s)	286, 2435
Tsp45I	GTSAC	2 cut(s)	286, 2435
TspGWI	ACGGA	1 cut(s)	566
TspRI	CASTG	2 cut(s)	3042, 3141
Van91I	CCANNNNNTGG	2 cut(s)	3041, 3286
VpaK11BI	GGWCC	4 cut(s)	150, 162, 1739, 2681
XapI	RAATTY	8 cut(s)	754, 1230, 2012, 2208, 2543, 2783, 3144, 3260
XceI	RCATGY	3 cut(s)	985, 1099, 1727
XcmI	CCANNNNNNNNNTGG	2 cut(s)	463, 2383
XmiI	GTMKAC	2 cut(s)	2914, 3212
XspI	CTAG	6 cut(s)	240, 804, 1811, 1884, 2006, 3347
Zsp2I	ATGCAT	2 cut(s)	2284, 2412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.