Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004789

Physical Location & Seq

Genomic Coordinates Forward (+)

13784437 .. 13798961

Gene Structure 14525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g20750.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3720 bp

ATGGCCAACTACCTCGCTCAGTTCCAGACCATAAAGAATTCACTCGATCATCTCGTCATCGCTGTTGAAGATGTTAGTGATTTGTGGCCTACTGTGAAGAAGGGATTTGAGGAGCATTTGCCTTTCAAAAGAGCTTGTTTAAACAACAAGACACGTAATCCCGTGTTTGTAGAGAATTTCCGGGCTGAATTCATATTAACAACAGATGCGAGACTCCGCAGCCGATTCCCACAGGAGCAGTCATTGTTTTGGTTTCGGGAGCCATATGCAACTGCGGTTCTCGTCACCTGTGAGGATCTTGATGAGTTCAAGACCATCCTCAAACCACGGCTAAAGCTAATTGTCCAAAATGATGAACGGGAATGGTTTATTGTTTTTGTATCCAAGGCGCATCCAAACAATGATCAAGCCACCAAAATGGCAAGTAAAGTATATGCCAAACTTGAAGTTGATTTTAGCTCGAAGAAGAGAGAAAGGTGTTGCAAATTTGATCTATATAGTGCTGAAGAAAGCTTTTGGGAAGACTTGGAAGCCAAGATAATGGAGTGCATCAGAAATACATTGGATAGACGTGCACAGTTTTATGAGGATGAGATACGCAAGCTCAGTGAACAACGCTTCATGCCAGTTTGGAACTTCTGCAATTTCTTTATTTTAAAGGAAAGCTTGGCTTTTATGTTTGAGATGGCCCATCTTTATGAAGATTCATTACGTGAATATGATGAGCTAGAAATTTGTTATTTGGAAACAGTCCAAACGATGGGAAGGAGAAGGGACTTTGGGGGAGTTGACCATGGTGATGATCAAGCATCATTGCTTAATTCTGGAAACAAACCTTTGACACAAATTGTTCAAGACGACTCGTTTAGGGAATTTGAATTTAGACAGTATCTGTTTGCCTGTCAATCAAAGCTTCTATTCAAGCTGAATCGCCCCTTTGAGGTTGCGTCCAGGGGATACTCATTCATTATAAGCTTTTCAAAGGCTCTGGCTTTTCATGAGAATATTCTACCTTTTTGTATGCGTGAAGTTTGGGTTATAACAGCTTGCATGTCCTTAGTCCATGCAACTGCTTCACATTATAAGGAAGGACTTGCAGCAGCTGATATAGAAAAGGAGTTCTACCGCCTTCAAGGTGATCTTTACTCACTGTGCAGGGTGAAGTTCATGAGGCTTGCTTATTTAATCGGATATGGCACAAATATGGAAAGAAGTCCTGGCAACAGTGCTTCACTCAGCATGCTACCTTGGCCCAAGCCAGCGACTTGGCCTTCTGTTCCACCTGATGCTTCGTCTGAGGTTCTAGCAAAAGAAAAGATAATTCTACAGGCAACTCCAGCAACCAAGCACTTTGGTATTCAGAGAAAACCATTGCCTCTTGAACCTTCTCTACTACTGCGTGAGGCGAATCGCAGGAGAGCTTCTCTCTCTGCTGGAAATATGTTTGAAATGCTTGATGGTCGCCAAAATTTTACTGATGGTTCAGGTTCAGATGCATCAATTAAGATGCCCTCGTTACAAAAAGTCCAAGCAAGTGCTATGTCGCGTACAAACTCTTCACCAGGAATGTTTGAGAGCTCAATTGATAGGCCCATGAGACTTGCAGAGATTTATGTTGCAGCTGAACGTGCTCTGCAGGCTACAGTTTCGAATACTGATCTGTGGAAGTCTTTGTCATCTATGGAGGAGTTTGAGCAAAAATATTTGGAGCTGACTAAGGGTGCTGCGGACAATTACCATAGATCCTGGTGGAAAAGGCATGGAGTTGTCCTTGATGGTGAAATAGCAGCAGTCTTGTTTAAGAATGGAAACTATGATCTAGCTGCAAAGTCATATGAGAAGGTTTGTGCTCTTTATGCGGGTGAAGGGTGGCAAGATTTATTGGCAGAAGTCCTGCCCAACTTAGCAGAGTGTCATAAGATACTCAATGACCAAGCTGGCTATCTATCTTCTTGCGTGAGGCTTCTTTCATTGGATAAAGGCTTGTTTTTAATGAAGGAACGTCAGGCTTTTCAGTCTGAGGTTGATCATCTTGCACATGCTGAAATGAAGCAACCTGTGCCACTGGATGTCTCATCACTAATTACATTCTCCGGTAATCCTGGGCCTCCATTAGAATTATGTGATGGGGATTCTGGTACTCTATCTGTGACATTTTGGAGTGGCTTTCCTGTTGACATAACGCTTGATTCGCTAAATCTCACATTGAATGCAATTTTCAATACTGATGAGGTTGCTAAGGCATTATGGAGCTCTACTGCGATTGTATTGAAGCCTGGTCGGAATACTGTTACCCTAGATTTACCACCCCAAAAACCAGGTTCATATGTTTTGGGGGTTCTTACTGGGCAGATTGGGCAGTTACGATTCAGGTCTCATAGCTTTTCCAAAGGCGGCCCTGAAGACAGTGAGGATTTTATGAGTTATGAAAAGCCTCCGAGGCCTGTTTTAAAGGTTTTCAAAGCACGACCTCTTGTTGATCTTGCTGCAGCTATTTCGTCGGCCCTGCTTATAAATGAAACTCAATGGGTTGGAATTATAGTAAGGCCTATTAACTACTCCCTCAAAGGTGCTGTCTTGTATGTTGATACTGGTCCTGGTCTTAAAATTGAAGAGTCCCATTTCATTGAGATGGAAAGCTACATTGCTGAATCAAATAATTCAGTTGAGCAATTGGCTCTTTCTGGTGATAGAGTAGAGTTTCCAGATTGGGCAAGTAATTTGCCTTCTGTTGTATGGATTCCAGTTCATGCTATCAGCGAAACACTTGCAAGAGGATCATCTTCAGTGGCTCCCCAAAGACAGATCAATTTGGATGGAATGAGGACAATAGCACTGAAACTTGAATTTGGAGCTTCTCACAATCAGATTTTTGAGAGGACCCTAGCTGTGCATTTTACGGATCCTTTCCATGTGAGTACACAAGTTGCAGATAAATGCAATGATGGAACTTTGCTTCTGCAGGTGATTTTACACTCTGAAGTGAAAGCCACATTAACGATCTTTGATGCTTGGCTTGATCTTCAAGATGGATTTGTTAATACCGGACAAAGTGATGGGCGACCAACCTCTGCCTACTTTCCACTTGTTGTTTCACCAAATTCTAGAGCCGGAATATTATTCAGTATACTTTTAGGGAAGACAAACGCTGAAGATGAAGCTAAGGCTGTTCAATCAGATAGTATACTAAATATTAGATATGGAATTTCTGGTGATAGAACAACTGGAGCGCATCCACCTGTGGCATCTCAATCTTCTGTGCCTGAGGGTGGCGGACAGGGTCTGATTTTCAGGAGTGCTCTTGTTTTGCAAAGGCCTGTGCTTGATCCAGTCCTGGCCGTTGGTTTTCTTCCTCTCCCTTCTAGTGGCCTTAGGGTTGGCCAGCTGGTTACCATGAAATGGAGGATTGAAAGATTAAAGGATTTTGAGGAGAATGAACGTTCCCATAACAATGATGAGGTGTTGTATGAAGTCAATGCAAATACTGAAAGTTGGATGGTAGCTGGGAGGAAAAGAGGGCACATCACTCTCTCTGCAAATGAAGGTTCAAGGATAGAGATTTCAATACTATGTGTGCCTCTGGTGGCGGGATATGTTCGTCCCCCTCATCTTGGTCTGCCAGATGTTGATGAATCAAATATAAGTTGCAATCCAGCAGGGCCTCATTTGGTTTGTGTCTTGCCTCCAACTTTGAGTTCTTCTTTCTGCATTCCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006891 GO:0007049 GO:0008150 GO:0009987 GO:0012505 GO:0016043 GO:0016192 GO:0016197 GO:0016482 GO:0022402 GO:0022607 GO:0030008 GO:0031410 GO:0031982 GO:0031984 GO:0032506 GO:0032991 GO:0034498 GO:0042147 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051301 GO:0051641 GO:0051649 GO:0061640 GO:0071840 GO:0097708 GO:0098791 GO:0099023 GO:1902410 GO:1903047 GO:1990071

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Foie-gras_1 TRAPPC10

Protein Analysis

1240

Amino Acids

138.75

Weight (kDa)

5.67

Isoelectric Point (pI)

46.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAPPC10_1st	PF23036	22 - 121	2.8e-17	Trafficking protein particle complex subunit 10-like, N-terminal
TRAPPC10	PF12584	928 - 1014	6.6e-11	Trafficking protein particle complex subunit 10, TRAPPC10

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54440 AT5G54440 AT5G54440
fragaria_vesca	FvH4_3g20750 FvH4_3g20750 FvH4_3g20750 FvH4_3g20750
malus_domestica	MD03G1222200.v1.1 MD11G1239600.v1.1
prunus_persica	Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1
pyrus_communis	pycom03g17080 pycom11g21130
rosa_chinensis	RchiOBHm_Chr5g0034971
rosa_laevigata	RLG00000033586 RLG00000033589
rosa_multiflora	Rmu_co8343959.1_g000001 Rmu_sc0000879.1_g000039 Rmu_sc0021290.1_g000001
rosa_roxburghii	Rroxscaffold_1G00045410
rosa_rugosa	Rorug05G0149100 Rorug05G0149200 Rorug05G0149300
rosa_samantha	Rh5AG242200 Rh5BG241800 Rh5CG273300 Rh5DG250400
rosa_wichuraiana	Rw5G022120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	971, 1040, 1083, 2513
AarI	CACCTGC	1 cut(s)	2953
Acc36I	ACCTGC	1 cut(s)	2953
AccB7I	CCANNNNNTGG	2 cut(s)	760, 3399
AccI	GTMKAC	2 cut(s)	3127, 3184
AccII	CGCG	1 cut(s)	1546
AciI	CCGC	8 cut(s)	217, 275, 1126, 1727, 1859, 2394, 3273, 3587
AclI	AACGTT	1 cut(s)	3439
AclWI	GGATC	6 cut(s)	303, 1737, 2785, 2897, 2910, 3320
AcoI	YGGCCR	3 cut(s)	3, 3336, 3379
AcuI	CTGAAG	5 cut(s)	525, 2421, 2769, 3000, 3171
AfaI	GTAC	3 cut(s)	1549, 2140, 2920
AfiI	CCNNNNNNNGG	6 cut(s)	760, 940, 3269, 3365, 3399, 3611
AflIII	ACRYGT	1 cut(s)	152
AjiI	CACGTC	1 cut(s)	572
AjnI	CCWGG	9 cut(s)	950, 1216, 1561, 1745, 2101, 2275, 2317, 2596, 3333
AjuI	GAANNNNNNNTTGG	2 cut(s)	3679, 3711
Alw21I	GWGCWC	6 cut(s)	577, 1580, 1633, 1852, 2255, 3301
Alw26I	GTCTC	4 cut(s)	205, 1591, 2077, 2379
Alw44I	GTGCAC	1 cut(s)	573
AlwI	GGATC	6 cut(s)	303, 1737, 2785, 2897, 2910, 3320
AlwNI	CAGNNNCTG	3 cut(s)	892, 1103, 3283
ApaLI	GTGCAC	1 cut(s)	573
ApeKI	GCWGC	9 cut(s)	219, 1097, 1100, 1619, 1724, 1787, 1823, 2486, 2489
ArsI	GACNNNNNNTTYG	2 cut(s)	2559, 2591
AspLEI	GCGC	2 cut(s)	391, 3232
AspS9I	GGNCC	9 cut(s)	688, 1251, 1590, 2105, 2396, 2503, 2594, 2880, 3659
AsuC2I	CCSGG	1 cut(s)	182
AsuII	TTCGAA	1 cut(s)	1649
AvaII	GGWCC	2 cut(s)	2594, 2880
AxyI	CCTNAGG	2 cut(s)	3264, 3371
BaeGI	GKGCMC	2 cut(s)	577, 3522
BalI	TGGCCA	2 cut(s)	5, 3381
BamHI	GGATCC	1 cut(s)	2902
BanII	GRGCYC	2 cut(s)	1580, 2255
BarI	GAAGNNNNNNTAC	6 cut(s)	693, 725, 1540, 1572, 2710, 2742
BbsI	GAAGAC	3 cut(s)	528, 2409, 3146
Bbv12I	GWGCWC	6 cut(s)	577, 1580, 1633, 1852, 2255, 3301
BbvI	GCAGC	9 cut(s)	231, 1109, 1112, 1631, 1711, 1799, 1810, 2473, 2501
BceAI	ACGGC	2 cut(s)	344, 3323
BcgI	CGANNNNNNTGC	4 cut(s)	2478, 2512, 2750, 2784
BciT130I	CCWGG	9 cut(s)	952, 1218, 1563, 1747, 2103, 2277, 2319, 2598, 3335
BciVI	GTATCC	2 cut(s)	391, 950
BclI	TGATCA	3 cut(s)	403, 802, 2026
BcnI	CCSGG	1 cut(s)	182
BcoDI	GTCTC	4 cut(s)	205, 1591, 2077, 2379
BfaI	CTAG	7 cut(s)	728, 1304, 1820, 2297, 2885, 3105, 3363
BfmI	CTRYAG	5 cut(s)	1325, 1634, 1641, 2487, 2960
BfuAI	ACCTGC	1 cut(s)	2953
BfuI	GTATCC	2 cut(s)	391, 950
BglI	GCCNNNNNGGC	1 cut(s)	2440
Bme18I	GGWCC	2 cut(s)	2594, 2880
BmgBI	CACGTC	1 cut(s)	572
BmgT120I	GGNCC	9 cut(s)	688, 1251, 1590, 2105, 2396, 2503, 2594, 2880, 3659
BmiI	GGNNCC	4 cut(s)	261, 2793, 2882, 2904
BmrI	ACTGGG	1 cut(s)	2355
BmuI	ACTGGG	1 cut(s)	2355
BpiI	GAAGAC	3 cut(s)	528, 2409, 3146
BplI	GAGNNNNNCTC	4 cut(s)	1408, 1440, 1410, 1442
BpmI	CTGGAG	2 cut(s)	1320, 3246
Bpu10I	CCTNAGC	2 cut(s)	2238, 3162
Bpu14I	TTCGAA	1 cut(s)	1649
BpuMI	CCSGG	1 cut(s)	182
BsaAI	YACGTR	2 cut(s)	155, 713
BsaI	GGTCTC	1 cut(s)	2379
BsaJI	CCNNGG	7 cut(s)	326, 384, 793, 951, 1247, 2102, 2438
BsaWI	WCCGGW	2 cut(s)	2093, 3044
Bsc4I	CCNNNNNNNGG	6 cut(s)	760, 940, 3269, 3365, 3399, 3611
Bse1I	ACTGG	7 cut(s)	626, 2070, 2350, 2596, 2744, 3229, 3329
Bse21I	CCTNAGG	2 cut(s)	3264, 3371
Bse3DI	GCAATG	4 cut(s)	812, 1370, 2643, 2947
BseBI	CCWGG	9 cut(s)	952, 1218, 1563, 1747, 2103, 2277, 2319, 2598, 3335
BseDI	CCNNGG	7 cut(s)	326, 384, 793, 951, 1247, 2102, 2438
BseGI	GGATG	7 cut(s)	315, 391, 595, 2074, 2821, 3232, 3501
BseLI	CCNNNNNNNGG	6 cut(s)	760, 940, 3269, 3365, 3399, 3611
BseMI	GCAATG	4 cut(s)	812, 1370, 2643, 2947
BseMII	CTCAG	6 cut(s)	32, 619, 1249, 1287, 2010, 3255
BseNI	ACTGG	7 cut(s)	626, 2070, 2350, 2596, 2744, 3229, 3329
BseRI	GAGGAG	3 cut(s)	125, 1700, 3443
BseSI	GKGCMC	2 cut(s)	577, 3522
BseXI	GCAGC	9 cut(s)	231, 1109, 1112, 1631, 1711, 1799, 1810, 2473, 2501
BseYI	CCCAGC	1 cut(s)	3503
BsgI	GTGCAG	1 cut(s)	1174
Bsh1236I	CGCG	1 cut(s)	1546
BsiHKAI	GWGCWC	6 cut(s)	577, 1580, 1633, 1852, 2255, 3301
BsiSI	CCGG	4 cut(s)	181, 2094, 3045, 3111
BslFI	GGGAC	3 cut(s)	788, 2602, 3585
BslI	CCNNNNNNNGG	6 cut(s)	760, 940, 3269, 3365, 3399, 3611
BsmAI	GTCTC	4 cut(s)	205, 1591, 2077, 2379
BsmFI	GGGAC	3 cut(s)	788, 2602, 3585
BsmI	GAATGC	2 cut(s)	2215, 3708
Bso31I	GGTCTC	1 cut(s)	2379
Bsp119I	TTCGAA	1 cut(s)	1649
Bsp1286I	GDGCHC	7 cut(s)	577, 1580, 1633, 1852, 2255, 3301, 3522
Bsp19I	CCATGG	1 cut(s)	793
BspACI	CCGC	8 cut(s)	217, 275, 1126, 1727, 1859, 2394, 3273, 3587
BspCNI	CTCAG	6 cut(s)	31, 618, 1248, 1288, 2011, 3256
BspFNI	CGCG	1 cut(s)	1546
BspHI	TCATGA	2 cut(s)	997, 1167
BspLI	GGNNCC	4 cut(s)	261, 2793, 2882, 2904
BspMAI	CTGCAG	3 cut(s)	1638, 2491, 2964
BspMI	ACCTGC	1 cut(s)	2953
BspPI	GGATC	6 cut(s)	303, 1737, 2785, 2897, 2910, 3320
BspT104I	TTCGAA	1 cut(s)	1649
BspTNI	GGTCTC	1 cut(s)	2379
BsrDI	GCAATG	4 cut(s)	812, 1370, 2643, 2947
BsrI	ACTGG	7 cut(s)	626, 2070, 2350, 2596, 2744, 3229, 3329
BssECI	CCNNGG	7 cut(s)	326, 384, 793, 951, 1247, 2102, 2438
BssNAI	GTATAC	2 cut(s)	3128, 3185
BssT1I	CCWWGG	3 cut(s)	384, 793, 1247
Bst1107I	GTATAC	2 cut(s)	3128, 3185
Bst2UI	CCWGG	9 cut(s)	952, 1218, 1563, 1747, 2103, 2277, 2319, 2598, 3335
Bst4CI	ACNGT	9 cut(s)	94, 579, 751, 888, 1152, 1226, 1645, 2290, 2408
Bst6I	CTCTTC	3 cut(s)	461, 1561, 2607
BstAPI	GCANNNNNTGC	1 cut(s)	2059
BstBAI	YACGTR	2 cut(s)	155, 713
BstBI	TTCGAA	1 cut(s)	1649
BstC8I	GCNNGC	8 cut(s)	602, 1048, 1176, 1241, 1260, 1638, 1939, 3383
BstDSI	CCRYGG	2 cut(s)	326, 793
BstEII	GGTNACC	1 cut(s)	3388
BstF5I	GGATG	7 cut(s)	315, 391, 595, 2074, 2821, 3232, 3501
BstFNI	CGCG	1 cut(s)	1546
BstHHI	GCGC	2 cut(s)	391, 3232
BstMAI	GTCTC	4 cut(s)	205, 1591, 2077, 2379
BstMWI	GCNNNNNNNGC	9 cut(s)	1249, 1337, 1628, 1637, 1856, 2059, 2191, 2356, 2440
BstNI	CCWGG	9 cut(s)	952, 1218, 1563, 1747, 2103, 2277, 2319, 2598, 3335
BstNSI	RCATGY	3 cut(s)	1054, 1243, 2042
BstPI	GGTNACC	1 cut(s)	3388
BstSFI	CTRYAG	5 cut(s)	1325, 1634, 1641, 2487, 2960
BstSLI	GKGCMC	2 cut(s)	577, 3522
BstUI	CGCG	1 cut(s)	1546
BstV1I	GCAGC	9 cut(s)	231, 1109, 1112, 1631, 1711, 1799, 1810, 2473, 2501
BstV2I	GAAGAC	3 cut(s)	528, 2409, 3146
BstX2I	RGATCY	3 cut(s)	295, 1742, 2902
BstXI	CCANNNNNNTGG	3 cut(s)	418, 541, 1266
BstYI	RGATCY	3 cut(s)	295, 1742, 2902
BstZ17I	GTATAC	2 cut(s)	3128, 3185
Bsu36I	CCTNAGG	2 cut(s)	3264, 3371
BsuI	GTATCC	2 cut(s)	391, 950
BtgI	CCRYGG	2 cut(s)	326, 793
BtgZI	GCGATG	1 cut(s)	43
BtrI	CACGTC	1 cut(s)	572
BtsCI	GGATG	7 cut(s)	315, 391, 595, 2074, 2821, 3232, 3501
BtsIMutI	CAGTG	7 cut(s)	613, 1148, 1231, 2063, 2413, 2793, 2834
BveI	ACCTGC	1 cut(s)	2953
Cac8I	GCNNGC	8 cut(s)	602, 1048, 1176, 1241, 1260, 1638, 1939, 3383
CaiI	CAGNNNCTG	3 cut(s)	892, 1103, 3283
CciI	TCATGA	2 cut(s)	997, 1167
CfoI	GCGC	2 cut(s)	391, 3232
Cfr13I	GGNCC	9 cut(s)	688, 1251, 1590, 2105, 2396, 2503, 2594, 2880, 3659
CseI	GACGC	1 cut(s)	936
CsiI	ACCWGGT	1 cut(s)	2317
Csp6I	GTAC	3 cut(s)	1548, 2139, 2919
CviQI	GTAC	3 cut(s)	1548, 2139, 2919
DraI	TTTAAA	3 cut(s)	141, 657, 2451
EaeI	YGGCCR	3 cut(s)	3, 3336, 3379
Eam1104I	CTCTTC	3 cut(s)	461, 1561, 2607
EarI	CTCTTC	3 cut(s)	461, 1561, 2607
EciI	GGCGGA	1 cut(s)	3288
Ecl136II	GAGCTC	2 cut(s)	1578, 2253
Eco130I	CCWWGG	3 cut(s)	384, 793, 1247
Eco147I	AGGCCT	3 cut(s)	2443, 2548, 3316
Eco24I	GRGCYC	2 cut(s)	1580, 2255
Eco31I	GGTCTC	1 cut(s)	2379
Eco47I	GGWCC	2 cut(s)	2594, 2880
Eco53kI	GAGCTC	2 cut(s)	1578, 2253
Eco57I	CTGAAG	5 cut(s)	525, 2421, 2769, 3000, 3171
Eco81I	CCTNAGG	2 cut(s)	3264, 3371
Eco91I	GGTNACC	1 cut(s)	3388
EcoICRI	GAGCTC	2 cut(s)	1578, 2253
EcoO109I	RGGNCCY	2 cut(s)	2880, 3659
EcoO65I	GGTNACC	1 cut(s)	3388
EcoRI	GAATTC	2 cut(s)	37, 188
EcoRII	CCWGG	9 cut(s)	950, 1216, 1561, 1745, 2101, 2275, 2317, 2596, 3333
EcoT14I	CCWWGG	3 cut(s)	384, 793, 1247
EcoT22I	ATGCAT	1 cut(s)	1498
EcoT38I	GRGCYC	2 cut(s)	1580, 2255
ErhI	CCWWGG	3 cut(s)	384, 793, 1247
FalI	AAGNNNNNCTT	6 cut(s)	650, 682, 655, 687, 1125, 1157
FaqI	GGGAC	3 cut(s)	788, 2602, 3585
FauI	CCCGC	2 cut(s)	1852, 3580
FauNDI	CATATG	3 cut(s)	265, 1834, 2326
FbaI	TGATCA	3 cut(s)	403, 802, 2026
FblI	GTMKAC	2 cut(s)	3127, 3184
FokI	GGATG	7 cut(s)	302, 378, 602, 2081, 2828, 3219, 3508
FriOI	GRGCYC	2 cut(s)	1580, 2255
FspBI	CTAG	7 cut(s)	728, 1304, 1820, 2297, 2885, 3105, 3363
GlaI	GCGC	2 cut(s)	390, 3231
GsaI	CCCAGC	1 cut(s)	3507
GsuI	CTGGAG	2 cut(s)	1320, 3246
HapII	CCGG	4 cut(s)	181, 2094, 3045, 3111
HgaI	GACGC	1 cut(s)	936
HhaI	GCGC	2 cut(s)	391, 3232
Hin6I	GCGC	2 cut(s)	389, 3230
HinP1I	GCGC	2 cut(s)	389, 3230
HincII	GTYRAC	2 cut(s)	790, 2176
HindII	GTYRAC	2 cut(s)	790, 2176
HindIII	AAGCTT	4 cut(s)	511, 664, 911, 973
HpaII	CCGG	4 cut(s)	181, 2094, 3045, 3111
Hpy166II	GTNNAC	7 cut(s)	575, 611, 790, 2176, 2921, 3128, 3185
Hpy8I	GTNNAC	7 cut(s)	575, 611, 790, 2176, 2921, 3128, 3185
Hpy99I	CGWCG	1 cut(s)	2503
HpyCH4III	ACNGT	9 cut(s)	94, 579, 751, 888, 1152, 1226, 1645, 2290, 2408
HpyCH4IV	ACGT	6 cut(s)	154, 571, 712, 1627, 2002, 3439
HpyF10VI	GCNNNNNNNGC	9 cut(s)	1249, 1337, 1628, 1637, 1856, 2059, 2191, 2356, 2440
HpySE526I	ACGT	6 cut(s)	154, 571, 712, 1627, 2002, 3439
HspAI	GCGC	2 cut(s)	389, 3230
Ksp22I	TGATCA	3 cut(s)	403, 802, 2026
LmnI	GCTCC	8 cut(s)	112, 235, 259, 1708, 2250, 2797, 2852, 3227
Lsp1109I	GCAGC	9 cut(s)	231, 1109, 1112, 1631, 1711, 1799, 1810, 2473, 2501
MabI	ACCWGGT	1 cut(s)	2317
MaeI	CTAG	7 cut(s)	728, 1304, 1820, 2297, 2885, 3105, 3363
MaeII	ACGT	6 cut(s)	154, 571, 712, 1627, 2002, 3439
MaeIII	GTNAC	6 cut(s)	283, 1515, 2149, 2290, 2361, 3388
MfeI	CAATTG	2 cut(s)	1581, 2672
MflI	RGATCY	3 cut(s)	295, 1742, 2902
MhlI	GDGCHC	7 cut(s)	577, 1580, 1633, 1852, 2255, 3301, 3522
MlsI	TGGCCA	2 cut(s)	5, 3381
MluNI	TGGCCA	2 cut(s)	5, 3381
MlyI	GAGTC	3 cut(s)	207, 854, 2624
MmeI	TCCRAC	4 cut(s)	2261, 2512, 3473, 3710
Mox20I	TGGCCA	2 cut(s)	5, 3381
Mph1103I	ATGCAT	1 cut(s)	1498
MscI	TGGCCA	2 cut(s)	5, 3381
MslI	CAYNNNNRTG	6 cut(s)	416, 696, 798, 1202, 2630, 3450
Msp20I	TGGCCA	2 cut(s)	5, 3381
MspA1I	CMGCKG	3 cut(s)	1103, 1622, 3385
MspI	CCGG	4 cut(s)	181, 2094, 3045, 3111
MssI	GTTTAAAC	1 cut(s)	141
MunI	CAATTG	2 cut(s)	1581, 2672
Mva1269I	GAATGC	2 cut(s)	2215, 3708
MvaI	CCWGG	9 cut(s)	952, 1218, 1563, 1747, 2103, 2277, 2319, 2598, 3335
MvnI	CGCG	1 cut(s)	1546
MwoI	GCNNNNNNNGC	9 cut(s)	1249, 1337, 1628, 1637, 1856, 2059, 2191, 2356, 2440
NciI	CCSGG	1 cut(s)	182
NcoI	CCATGG	1 cut(s)	793
NdeI	CATATG	3 cut(s)	265, 1834, 2326
NlaIV	GGNNCC	4 cut(s)	261, 2793, 2882, 2904
NmuCI	GTSAC	2 cut(s)	283, 2149
NsiI	ATGCAT	1 cut(s)	1498
NspI	RCATGY	3 cut(s)	1054, 1243, 2042
NspV	TTCGAA	1 cut(s)	1649
PaeI	GCATGC	1 cut(s)	1243
PagI	TCATGA	2 cut(s)	997, 1167
PaqCI	CACCTGC	1 cut(s)	2953
PceI	AGGCCT	3 cut(s)	2443, 2548, 3316
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PctI	GAATGC	2 cut(s)	2215, 3708
PflFI	GACNNNGTC	1 cut(s)	3279
PflMI	CCANNNNNTGG	2 cut(s)	760, 3399
PleI	GAGTC	3 cut(s)	207, 854, 2623
PmeI	GTTTAAAC	1 cut(s)	141
PpsI	GAGTC	3 cut(s)	207, 854, 2623
Ppu21I	YACGTR	2 cut(s)	155, 713
PpuMI	RGGWCCY	1 cut(s)	2880
PsiI	TTATAA	4 cut(s)	971, 1040, 1083, 2513
Psp124BI	GAGCTC	2 cut(s)	1580, 2255
Psp1406I	AACGTT	1 cut(s)	3439
Psp5II	RGGWCCY	1 cut(s)	2880
Psp6I	CCWGG	9 cut(s)	950, 1216, 1561, 1745, 2101, 2275, 2317, 2596, 3333
PspEI	GGTNACC	1 cut(s)	3388
PspFI	CCCAGC	1 cut(s)	3503
PspGI	CCWGG	9 cut(s)	950, 1216, 1561, 1745, 2101, 2275, 2317, 2596, 3333
PspN4I	GGNNCC	4 cut(s)	261, 2793, 2882, 2904
PspPI	GGNCC	9 cut(s)	688, 1251, 1590, 2105, 2396, 2503, 2594, 2880, 3659
PspPPI	RGGWCCY	1 cut(s)	2880
PsrI	GAACNNNNNNTAC	2 cut(s)	1374, 1406
PstI	CTGCAG	3 cut(s)	1638, 2491, 2964
PstNI	CAGNNNCTG	3 cut(s)	892, 1103, 3283
PsuI	RGATCY	3 cut(s)	295, 1742, 2902
PsyI	GACNNNGTC	1 cut(s)	3279
PvuII	CAGCTG	3 cut(s)	1103, 1622, 3385
RsaI	GTAC	3 cut(s)	1549, 2140, 2920
RsaNI	GTAC	3 cut(s)	1548, 2139, 2919
RseI	CAYNNNNRTG	6 cut(s)	416, 696, 798, 1202, 2630, 3450
SacI	GAGCTC	2 cut(s)	1580, 2255
Sau96I	GGNCC	9 cut(s)	688, 1251, 1590, 2105, 2396, 2503, 2594, 2880, 3659
SchI	GAGTC	3 cut(s)	207, 854, 2624
SduI	GDGCHC	7 cut(s)	577, 1580, 1633, 1852, 2255, 3301, 3522
SexAI	ACCWGGT	1 cut(s)	2317
SfcI	CTRYAG	5 cut(s)	1325, 1634, 1641, 2487, 2960
SfuI	TTCGAA	1 cut(s)	1649
SinI	GGWCC	2 cut(s)	2594, 2880
SmiMI	CAYNNNNRTG	6 cut(s)	416, 696, 798, 1202, 2630, 3450
SphI	GCATGC	1 cut(s)	1243
SseBI	AGGCCT	3 cut(s)	2443, 2548, 3316
SsiI	CCGC	8 cut(s)	217, 275, 1126, 1727, 1859, 2394, 3273, 3587
SspI	AATATT	4 cut(s)	1006, 1703, 3117, 3193
SspMI	CTAG	7 cut(s)	728, 1304, 1820, 2297, 2885, 3105, 3363
SstI	GAGCTC	2 cut(s)	1580, 2255
StuI	AGGCCT	3 cut(s)	2443, 2548, 3316
StyI	CCWWGG	3 cut(s)	384, 793, 1247
TaaI	ACNGT	9 cut(s)	94, 579, 751, 888, 1152, 1226, 1645, 2290, 2408
TaiI	ACGT	6 cut(s)	157, 574, 715, 1630, 2005, 3442
TaqI	TCGA	3 cut(s)	45, 461, 1649
TatI	WGTACW	1 cut(s)	2918
TauI	GCSGC	1 cut(s)	2397
TscAI	CASTG	7 cut(s)	613, 1155, 1231, 2070, 2413, 2793, 2841
TseFI	GTSAC	2 cut(s)	283, 2149
TseI	GCWGC	9 cut(s)	219, 1097, 1100, 1619, 1724, 1787, 1823, 2486, 2489
Tsp45I	GTSAC	2 cut(s)	283, 2149
TspGWI	ACGGA	1 cut(s)	2915
TspRI	CASTG	7 cut(s)	613, 1155, 1231, 2070, 2413, 2793, 2841
Tth111I	GACNNNGTC	1 cut(s)	3279
Van91I	CCANNNNNTGG	2 cut(s)	760, 3399
VneI	GTGCAC	1 cut(s)	573
VpaK11BI	GGWCC	2 cut(s)	2594, 2880
XbaI	TCTAGA	1 cut(s)	3104
XceI	RCATGY	3 cut(s)	1054, 1243, 2042
XmiI	GTMKAC	2 cut(s)	3127, 3184
XspI	CTAG	7 cut(s)	728, 1304, 1820, 2297, 2885, 3105, 3363
Zsp2I	ATGCAT	1 cut(s)	1498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.