Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004789

Physical Location & Seq

Genomic Coordinates Forward (+)

22099764 .. 22107849

Gene Structure 8086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G54440.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3780 bp

ATGGCGAACTACTTGGCTCAGTTCCAGACGATTAAGAATTCCTGCGATCGTCTCGTCGCCGCCGTGGAAGATGTGTGTGATCTGTGGCCTACAGTGAAAGGTTTATTTGAAGAACATCAGCCATTAAAAAGAGCATTCTTGACTAACAAGACTCGAAATCCGGTTTTTGTTGAGAACTTGCCGGTTGAATTCATATTAACTACAGACGCGAGGCTTCGTAGTCGATTCCCGCAGGAGCAGTATTTGTTCTGGTTTCGAGAACCATACGCAACTATAGTTCTTGTCACATGTGAGGATCTTGATGAGTTTAAAAACATTCTCAAACCACGTCTGAAATTAATTGTTCAGAATGATGAGAGGGAATGGTTTATTGTATTTGTATCTAAAGCTCATCCAAGTAATGATCAAGCAACTAAAAATGTCAAGAAAGTATATGCGAAGCTTGAAGTTGACTTCAGTTCAAAAAAGAGAGAAAGGTGCTGTAAGCTGGATGTACATGGCCCTGAAGGAAATTTTTGGGAGGACCTTGAATTAAAGATTACCGAGTGCATCAGGAATACCTTGGATAGGCGCGCACAATTCTACGAGGATGAGATACGCAAGCTCAGTGAGCAGCGGTTTATGCCAATATGGAACTTTTGTAACTTTTTCATCCTGAAGGAAAGTTTGGCTTTCATATTTGAGATGGCTCATCTTCATGAAGATGCATTACGTGAATATGATGAACTAGAGCTCTGCTATTTGGAAACAGTTAATATGCCTGGGAAACAGAGGGATTTTGGAGGATTCGACGGTGAAGATGACCAAGCTGTGCTGCTGAAACCAGGAAGCAAACCATTGACACAGATTGTGCAAGATGATTCTTTTAGAGAATTCGAGTTTAGACAGTATCTCTTTGCCTGTCAATCTAGGCTGTTGTTCAAGTTGAATCGTCCATTTGAAGTTGCATCTAGGGGATATTCTTTTGTTATTAGTTTTGCAAAGGCCTTGACCCTTCATGAGAGTGTACTGCCCTTCTGTATGCGAGAAGTTTGGGTAATTACTGCATGTTTAGCGCTGATCGAAGCAACTGCTTCTCATCACCATGATGGCGTTGTTGCACCTGATATTGAGAAGGAATTTTTCCGTCTTCAGGGTGATCTCTATTCACTTTCACGGGTTAAGTTCATGAGACTTGGATATCTGATAGGATATGGAACAGACATCGAAAAGAGTCCACTGAACAGTGCTTGTCTCAGTATGCTGCCTTGGCCAAAACCGGCTGTCTGGCCATCTCTTCCACAAGATGCTTCCTCGGAGGTGCTTGAAAAAGAAAAGACTATTCTTCAAGCAACTTCAAGGACCAAGCACTTTGGTATTCAACGGAAAGCCTTACCTCTTGAACCATCTGTCCTTCTACGTGTGGCTAACAGAAGAAGGGCTTCTCTTTCAACCGGAAATATTCCTGAAATGTTTGATGGGCGCCCAAGTTTTACTGAAGGATCAGGTTTAGAAGCGTCTCCGAGAACACCTTCATCACTTAAAGTACAAGCACCTCCCATGTCAAGAACAAATTCTTCACCAGGAAATTTTGAGAGTCCCCTAGATAGGCCTATGAGGCTTGCTGAAATTTTTGTTGCAGCTGAGCACGCTCTACGACTTACCATTTCAGATCATGATTTGTTGAAGACATTGTCATCTATTCAGGATTTCGAGAATAAATATCTTAACCTAACCAAAGGTGCTGCCGAAAACTATCACCGTTCCTGGTGGAAGAGACATGGAGTCGTTCTCGATGGGGAAATTGCAGCTGTCTGCTTCAAGCACGGAAAATATGATTTGGCTGCAAACTCTTATGAAAAAGTTTGTGCCCTTTATGCGGGTGAAGGATGGCAAGATTTACTGGCAGAAGTCTTGCCTAATTTAGCACAGTGTCAAAAGATTCTTGATGATCAAGCTGGGTACATGTCATCTTGTGTTAGACTACTTTCGTTGGATAAAGGATTATTCTCGTCCAAGGAGCGGCAAGCTTTTCAGTCCGAGGTTGTTACTCTTGCACACAGTGAAATGAAGAACCCAGTTCCCTTAGATGTGTCATCATTGATCACATTTTCTGGAAATACTGGCCCTCCACTTCAGTTGTGTGATGGAGACCCTGGGAATCTATCTGTTACTGTGTGGAGTGGCTTTCCTGATGATATCACCCTTGATTCGCTTAGTCTTACCTTGGTAGCCACCAACAACACTGACGAAGGCGGCCAGGCTTTAAAGAGTTCCGCTGCAACTGTGCTAAACCCCGGAAGGAATACTATCACTTTTGCTCTGCCTCCACAAAAACCCGGTTCCTATGTCTTGGGAGTTGTTACTGGCCAGATTGGGCGCTTGAGATTCAGGTCTCATAGCTTTTCGAAGGGTGGTCCTGCAGATAGTGACGACTTCATGAGTTATGAGAAGCCAACCAGACCTATCCTGAAGGTTTCCAAACCAAGAGCTCTGGTTGATCTTGCTGCAGCTGTATCTTCTGCTCTGCTAATAAATGAAGCCCAGTGGATTGGTATCATAGTACGTCCTATTGCTTACTCACTTAAAGGCGCGATCTTGCACATTGATACTGGTCCAGGGCTAAAGATTGAAGACTCGTATGGAATTGAGATGGAGAGATACATGGACGCAGATTGTGATACTGGTGCATCAAAAGCTGAGGTTTTTGTTGAAGATAGTCCTGTCTCTTCAAAACGGGATTCAGAGGTGCTTAATCTTTGCGATGGTAAAATAGTGTTCTCAGATTGGGCTAGCAATGTGAGTTCTATTCTTTGGGTCCCTGTTCGTGCCTTGAGTGAGAAGCTTGCTAGAGGGTCATCATCAGTCACTCCGCTGAAACAAGATATTTTAGAGGGAATGAGAACTGTAGCTTTGAAACTTGAATTTGGGGTTCATCATAACCAGATATTTGAGAGAACCATAGCTGCACATTTTACCGATCCCTTTGATGTGACCACAAGGGTGGCAAACAAATGCAATGATGGCACTTTGGTCTTGCAGGTTATGTTACACTCCCTCGTCAAGGCGAACTTGATAGTTCTTGATGTTTGGCTTGATCTTCAAGATGGATTTATTCATGGACAAAATGATGGAAGACCGACTTCAACGTTCTTTCCGCTTGTCGTGTCTCCAGGATCTAGAGCAGCAGTCGTGTTCAGTATATGCCTAGACAAGAGTATGTCATCAGAAGGGAAAGATTTGCAGCTACCAGAAAGCATTCTGAATATCAAATATGGAATCCATGGGGATAGAGCAGCTGGAGCACACAGGCCAGTGGATGCAGATCACTCTGAAACTGATACTGAAGGGAGAGATTTGGTGTTCAAGAGTGCTATTGTTTTGCAGCGTCCAGTACTTGATCCTTGCCTCACAGTTGGATTCCTCCCACTTCCTTCTGATGGGCTTAGGGTCGGGAAACTTATCACCATGCAGTGGAGAGTGGAAAGGCTTAAAGAACTCAAAGAAAGTGAAGCCGTGGAACAACAACATGATGAGGTGTTATATGAAGTCAATGCAAATTCGGAGAATTGGATGATCGCTGGTAGGAAGAGAGGCCATGTCTCTCTCTCAGAGGAGCAAGGTTCAAGAGTAGTAATCTCGATACTATGTGTCCCGTTAGTTGCGGGTTATGTCCGTCCTCCTCAACTCGGGTTGCCAAACGTAGAAGAAGCAAATGTAAGCAGCAATCCATCGGGTCCTCACTTAGTATGTGTCTTGCCTCCACTTCTCAGTTCTTCCTACTGCTTACCTGTCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006891 GO:0007049 GO:0008150 GO:0009987 GO:0012505 GO:0016043 GO:0016192 GO:0016197 GO:0016482 GO:0022402 GO:0022607 GO:0030008 GO:0031410 GO:0031982 GO:0031984 GO:0032506 GO:0032991 GO:0034498 GO:0042147 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051301 GO:0051641 GO:0051649 GO:0061640 GO:0071840 GO:0097708 GO:0098791 GO:0099023 GO:1902410 GO:1903047 GO:1990071

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Foie-gras_1 TRAPPC10

Protein Analysis

1259

Amino Acids

140.68

Weight (kDa)

5.81

Isoelectric Point (pI)

44.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAPPC10_1st	PF23036	22 - 316	2.2e-50	Trafficking protein particle complex subunit 10-like, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54440 AT5G54440 AT5G54440
fragaria_vesca	FvH4_3g20750 FvH4_3g20750 FvH4_3g20750 FvH4_3g20750
malus_domestica	MD03G1222200.v1.1 MD11G1239600.v1.1
prunus_persica	Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1
pyrus_communis	pycom03g17080 pycom11g21130
rosa_chinensis	RchiOBHm_Chr5g0034971
rosa_laevigata	RLG00000033586 RLG00000033589
rosa_multiflora	Rmu_co8343959.1_g000001 Rmu_sc0000879.1_g000039 Rmu_sc0021290.1_g000001
rosa_roxburghii	Rroxscaffold_1G00045410
rosa_rugosa	Rorug05G0149100 Rorug05G0149200 Rorug05G0149300
rosa_samantha	Rh5AG242200 Rh5BG241800 Rh5CG273300 Rh5DG250400
rosa_wichuraiana	Rw5G022120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	3010
AccB1I	GGYRCC	1 cut(s)	1461
AccB7I	CCANNNNNTGG	1 cut(s)	3453
AccBSI	CCGCTC	1 cut(s)	2002
AccII	CGCG	3 cut(s)	209, 573, 2573
AclI	AACGTT	1 cut(s)	3128
AclWI	GGATC	5 cut(s)	303, 1489, 2954, 3163, 3374
AcoI	YGGCCR	4 cut(s)	1250, 1268, 2236, 2347
AcuI	CTGAAG	8 cut(s)	439, 525, 677, 1115, 1497, 2099, 2471, 3345
AcyI	GRCGYC	1 cut(s)	1462
AdeI	CACNNNGTG	1 cut(s)	2042
AfaI	GTAC	6 cut(s)	495, 1008, 1527, 1943, 2544, 3375
AfeI	AGCGCT	1 cut(s)	1056
AfiI	CCNNNNNNNGG	9 cut(s)	567, 1132, 1587, 1858, 2001, 3043, 3419, 3453, 3668
AflIII	ACRYGT	3 cut(s)	287, 1399, 1944
AhdI	GACNNNNNGTC	1 cut(s)	1763
AjiI	CACGTC	1 cut(s)	329
AjnI	CCWGG	8 cut(s)	760, 823, 1561, 1745, 2134, 2238, 2596, 3151
AjuI	GAANNNNNNNTTGG	2 cut(s)	650, 682
AleI	CACNNNNGTG	1 cut(s)	2981
AloI	GAACNNNNNNTCC	2 cut(s)	1374, 1406
Alw21I	GWGCWC	4 cut(s)	735, 1629, 2473, 3286
AlwI	GGATC	5 cut(s)	303, 1489, 2954, 3163, 3374
Ama87I	CYCGRG	1 cut(s)	3668
Aor51HI	AGCGCT	1 cut(s)	1056
AseI	ATTAAT	1 cut(s)	338
Asp700I	GAANNNNTTC	4 cut(s)	1420, 1510, 1552, 3237
AspLEI	GCGC	6 cut(s)	573, 575, 1057, 1464, 2361, 2573
AspS9I	GGNCC	8 cut(s)	500, 523, 1341, 2105, 2396, 2594, 2797, 3716
AsuC2I	CCSGG	2 cut(s)	2277, 2319
AsuHPI	GGTGA	8 cut(s)	806, 1073, 1148, 1551, 1730, 1874, 2173, 3436
AsuII	TTCGAA	1 cut(s)	2387
AsuNHI	GCTAGC	1 cut(s)	2771
AvaI	CYCGRG	1 cut(s)	3668
AvaII	GGWCC	6 cut(s)	523, 1341, 2396, 2594, 2797, 3716
BaeGI	GKGCMC	1 cut(s)	1852
BalI	TGGCCA	3 cut(s)	1252, 1270, 2349
BanI	GGYRCC	1 cut(s)	1461
BanII	GRGCYC	2 cut(s)	735, 2473
BarI	GAAGNNNNNNTAC	2 cut(s)	693, 725
BbsI	GAAGAC	4 cut(s)	1121, 1673, 2619, 3121
Bbv12I	GWGCWC	4 cut(s)	735, 1629, 2473, 3286
BbvCI	CCTCAGC	1 cut(s)	2679
BceAI	ACGGC	2 cut(s)	47, 3479
BcgI	CGANNNNNNTGC	2 cut(s)	1052, 1086
BciT130I	CCWGG	8 cut(s)	762, 825, 1563, 1747, 2136, 2240, 2598, 3153
BclI	TGATCA	3 cut(s)	403, 1930, 2082
BcnI	CCSGG	2 cut(s)	2277, 2319
BfaI	CTAG	8 cut(s)	728, 909, 951, 1583, 2772, 2829, 3159, 3188
BfmI	CTRYAG	6 cut(s)	90, 201, 273, 2400, 2487, 2886
BfoI	RGCGCY	3 cut(s)	1058, 1465, 2362
BfuAI	ACCTGC	1 cut(s)	3010
BglI	GCCNNNNNGGC	1 cut(s)	1597
BlpI	GCTNAGC	1 cut(s)	1623
BmcAI	AGTACT	1 cut(s)	3375
Bme18I	GGWCC	6 cut(s)	523, 1341, 2396, 2594, 2797, 3716
BmeRI	GACNNNNNGTC	1 cut(s)	1763
BmeT110I	CYCGRG	1 cut(s)	3668
BmgBI	CACGTC	1 cut(s)	329
BmgT120I	GGNCC	8 cut(s)	500, 523, 1341, 2105, 2396, 2594, 2797, 3716
BmiI	GGNNCC	5 cut(s)	1463, 2323, 2798, 2799, 3717
BmrI	ACTGGG	2 cut(s)	2051, 2518
BmsI	GCATC	6 cut(s)	558, 694, 956, 1276, 2678, 3289
BmtI	GCTAGC	1 cut(s)	2775
BmuI	ACTGGG	2 cut(s)	2051, 2518
BpiI	GAAGAC	4 cut(s)	1121, 1673, 2619, 3121
BplI	GAGNNNNNCTC	2 cut(s)	1755, 1787
BpmI	CTGGAG	2 cut(s)	3135, 3300
Bpu10I	CCTNAGC	2 cut(s)	2679, 3425
Bpu1102I	GCTNAGC	1 cut(s)	1623
Bpu14I	TTCGAA	1 cut(s)	2387
BpuEI	CTTGAG	2 cut(s)	2383, 2833
BpuMI	CCSGG	2 cut(s)	2277, 2319
BsaAI	YACGTR	2 cut(s)	713, 1400
BsaBI	GATNNNNATC	2 cut(s)	2534, 3303
BsaHI	GRCGYC	1 cut(s)	1462
BsaI	GGTCTC	2 cut(s)	2124, 2379
BsaWI	WCCGGW	2 cut(s)	160, 1433
BsaXI	ACNNNNNCTCC	2 cut(s)	2092, 2122
Bsc4I	CCNNNNNNNGG	9 cut(s)	567, 1132, 1587, 1858, 2001, 3043, 3419, 3453, 3668
Bse118I	RCCGGY	2 cut(s)	181, 1258
Bse1I	ACTGG	9 cut(s)	1887, 2057, 2107, 2350, 2524, 2596, 2668, 3293, 3371
Bse3DI	GCAATG	2 cut(s)	2782, 3004
Bse8I	GATNNNNATC	2 cut(s)	2534, 3303
BseBI	CCWGG	8 cut(s)	762, 825, 1563, 1747, 2136, 2240, 2598, 3153
BseGI	GGATG	7 cut(s)	391, 496, 595, 651, 1874, 3304, 3558
BseJI	GATNNNNATC	2 cut(s)	2534, 3303
BseLI	CCNNNNNNNGG	9 cut(s)	567, 1132, 1587, 1858, 2001, 3043, 3419, 3453, 3668
BseMI	GCAATG	2 cut(s)	2782, 3004
BseMII	CTCAG	8 cut(s)	32, 619, 1249, 1614, 2670, 2775, 3603, 3763
BseNI	ACTGG	9 cut(s)	1887, 2057, 2107, 2350, 2524, 2596, 2668, 3293, 3371
BsePI	GCGCGC	1 cut(s)	571
BseRI	GAGGAG	2 cut(s)	3608, 3651
BseSI	GKGCMC	1 cut(s)	1852
BseYI	CCCAGC	1 cut(s)	1937
BsgI	GTGCAG	1 cut(s)	2931
Bsh1236I	CGCG	3 cut(s)	209, 573, 2573
Bsh1285I	CGRYCG	1 cut(s)	49
BshNI	GGYRCC	1 cut(s)	1461
BsiEI	CGRYCG	1 cut(s)	49
BsiHKAI	GWGCWC	4 cut(s)	735, 1629, 2473, 3286
BsiHKCI	CYCGRG	1 cut(s)	3668
BsiSI	CCGG	6 cut(s)	161, 182, 1259, 1434, 2277, 2319
BslFI	GGGAC	3 cut(s)	1563, 2783, 3617
BslI	CCNNNNNNNGG	9 cut(s)	567, 1132, 1587, 1858, 2001, 3043, 3419, 3453, 3668
BsmBI	CGTCTC	2 cut(s)	56, 1503
BsmFI	GGGAC	3 cut(s)	1563, 2783, 3617
BsmI	GAATGC	2 cut(s)	134, 3237
Bso31I	GGTCTC	2 cut(s)	2124, 2379
BsoBI	CYCGRG	1 cut(s)	3668
Bsp119I	TTCGAA	1 cut(s)	2387
Bsp1286I	GDGCHC	5 cut(s)	735, 1629, 1852, 2473, 3286
Bsp1407I	TGTACA	1 cut(s)	493
Bsp1720I	GCTNAGC	1 cut(s)	1623
Bsp19I	CCATGG	1 cut(s)	3262
BspCNI	CTCAG	8 cut(s)	31, 618, 1248, 1615, 2671, 2774, 3602, 3762
BspFNI	CGCG	3 cut(s)	209, 573, 2573
BspHI	TCATGA	5 cut(s)	697, 997, 1167, 1654, 2418
BspLI	GGNNCC	5 cut(s)	1463, 2323, 2798, 2799, 3717
BspMAI	CTGCAG	2 cut(s)	2404, 2491
BspMI	ACCTGC	1 cut(s)	3010
BspOI	GCTAGC	1 cut(s)	2775
BspPI	GGATC	5 cut(s)	303, 1489, 2954, 3163, 3374
BspT104I	TTCGAA	1 cut(s)	2387
BspT107I	GGYRCC	1 cut(s)	1461
BspTNI	GGTCTC	2 cut(s)	2124, 2379
BsrBI	CCGCTC	1 cut(s)	2002
BsrDI	GCAATG	2 cut(s)	2782, 3004
BsrFI	RCCGGY	2 cut(s)	181, 1258
BsrGI	TGTACA	1 cut(s)	493
BsrI	ACTGG	9 cut(s)	1887, 2057, 2107, 2350, 2524, 2596, 2668, 3293, 3371
BssAI	RCCGGY	2 cut(s)	181, 1258
BssHII	GCGCGC	1 cut(s)	571
BssNI	GRCGYC	1 cut(s)	1462
BssT1I	CCWWGG	5 cut(s)	561, 1247, 1995, 2205, 3262
Bst2UI	CCWGG	8 cut(s)	762, 825, 1563, 1747, 2136, 2240, 2598, 3153
Bst6I	CTCTTC	4 cut(s)	1281, 1748, 2713, 3563
BstACI	GRCGYC	1 cut(s)	1462
BstAUI	TGTACA	1 cut(s)	493
BstBAI	YACGTR	2 cut(s)	713, 1400
BstBI	TTCGAA	1 cut(s)	2387
BstC8I	GCNNGC	7 cut(s)	573, 602, 1602, 1629, 2007, 2773, 2826
BstDSI	CCRYGG	3 cut(s)	63, 3262, 3495
BstENI	CCTNNNNNAGG	2 cut(s)	565, 3041
BstF5I	GGATG	7 cut(s)	391, 496, 595, 651, 1874, 3304, 3558
BstFNI	CGCG	3 cut(s)	209, 573, 2573
BstH2I	RGCGCY	3 cut(s)	1058, 1465, 2362
BstHHI	GCGC	6 cut(s)	573, 575, 1057, 1464, 2361, 2573
BstMCI	CGRYCG	1 cut(s)	49
BstNI	CCWGG	8 cut(s)	762, 825, 1563, 1747, 2136, 2240, 2598, 3153
BstNSI	RCATGY	3 cut(s)	291, 1050, 1948
BstSFI	CTRYAG	6 cut(s)	90, 201, 273, 2400, 2487, 2886
BstSLI	GKGCMC	1 cut(s)	1852
BstUI	CGCG	3 cut(s)	209, 573, 2573
BstV2I	GAAGAC	4 cut(s)	1121, 1673, 2619, 3121
BstX2I	RGATCY	2 cut(s)	295, 3155
BstXI	CCANNNNNNTGG	2 cut(s)	2531, 2983
BstYI	RGATCY	2 cut(s)	295, 3155
BtgI	CCRYGG	3 cut(s)	63, 3262, 3495
BtgZI	GCGATG	1 cut(s)	2757
BtrI	CACGTC	1 cut(s)	329
BtsCI	GGATG	7 cut(s)	391, 496, 595, 651, 1874, 3304, 3558
BtsI	GCAGTG	1 cut(s)	3458
BveI	ACCTGC	1 cut(s)	3010
Cac8I	GCNNGC	7 cut(s)	573, 602, 1602, 1629, 2007, 2773, 2826
CciI	TCATGA	5 cut(s)	697, 997, 1167, 1654, 2418
CfoI	GCGC	6 cut(s)	573, 575, 1057, 1464, 2361, 2573
Cfr10I	RCCGGY	2 cut(s)	181, 1258
Cfr13I	GGNCC	8 cut(s)	500, 523, 1341, 2105, 2396, 2594, 2797, 3716
CseI	GACGC	4 cut(s)	215, 1485, 2657, 3356
Csp6I	GTAC	6 cut(s)	494, 1007, 1526, 1942, 2543, 3374
CspCI	CAANNNNNGTGG	2 cut(s)	2100, 2135
CviQI	GTAC	6 cut(s)	494, 1007, 1526, 1942, 2543, 3374
DinI	GGCGCC	1 cut(s)	1463
DraI	TTTAAA	2 cut(s)	310, 2247
DraIII	CACNNNGTG	1 cut(s)	2042
DriI	GACNNNNNGTC	1 cut(s)	1763
EaeI	YGGCCR	4 cut(s)	1250, 1268, 2236, 2347
Eam1104I	CTCTTC	4 cut(s)	1281, 1748, 2713, 3563
Eam1105I	GACNNNNNGTC	1 cut(s)	1763
EarI	CTCTTC	4 cut(s)	1281, 1748, 2713, 3563
Ecl136II	GAGCTC	2 cut(s)	733, 2471
Eco130I	CCWWGG	5 cut(s)	561, 1247, 1995, 2205, 3262
Eco147I	AGGCCT	2 cut(s)	986, 1591
Eco24I	GRGCYC	2 cut(s)	735, 2473
Eco31I	GGTCTC	2 cut(s)	2124, 2379
Eco32I	GATATC	2 cut(s)	1181, 2179
Eco47I	GGWCC	6 cut(s)	523, 1341, 2396, 2594, 2797, 3716
Eco47III	AGCGCT	1 cut(s)	1056
Eco53kI	GAGCTC	2 cut(s)	733, 2471
Eco57I	CTGAAG	8 cut(s)	439, 525, 677, 1115, 1497, 2099, 2471, 3345
Eco88I	CYCGRG	1 cut(s)	3668
EcoICRI	GAGCTC	2 cut(s)	733, 2471
EcoNI	CCTNNNNNAGG	2 cut(s)	565, 3041
EcoO109I	RGGNCCY	3 cut(s)	523, 2797, 3716
EcoRI	GAATTC	3 cut(s)	37, 188, 872
EcoRII	CCWGG	8 cut(s)	760, 823, 1561, 1745, 2134, 2238, 2596, 3151
EcoRV	GATATC	2 cut(s)	1181, 2179
EcoT14I	CCWWGG	5 cut(s)	561, 1247, 1995, 2205, 3262
EcoT22I	ATGCAT	1 cut(s)	709
EcoT38I	GRGCYC	2 cut(s)	735, 2473
EgeI	GGCGCC	1 cut(s)	1463
EheI	GGCGCC	1 cut(s)	1463
ErhI	CCWWGG	5 cut(s)	561, 1247, 1995, 2205, 3262
Esp3I	CGTCTC	2 cut(s)	56, 1503
FalI	AAGNNNNNCTT	8 cut(s)	655, 687, 1405, 1437, 3035, 3067, 3106, 3138
FaqI	GGGAC	3 cut(s)	1563, 2783, 3617
FauI	CCCGC	3 cut(s)	237, 1852, 3637
FbaI	TGATCA	3 cut(s)	403, 1930, 2082
FokI	GGATG	7 cut(s)	378, 503, 602, 638, 1881, 3311, 3565
FriOI	GRGCYC	2 cut(s)	735, 2473
FspBI	CTAG	8 cut(s)	728, 909, 951, 1583, 2772, 2829, 3159, 3188
GlaI	GCGC	6 cut(s)	572, 574, 1056, 1463, 2360, 2572
GsaI	CCCAGC	1 cut(s)	1941
GsuI	CTGGAG	2 cut(s)	3135, 3300
HaeII	RGCGCY	3 cut(s)	1058, 1465, 2362
HapII	CCGG	6 cut(s)	161, 182, 1259, 1434, 2277, 2319
HgaI	GACGC	4 cut(s)	215, 1485, 2657, 3356
HhaI	GCGC	6 cut(s)	573, 575, 1057, 1464, 2361, 2573
Hin1I	GRCGYC	1 cut(s)	1462
Hin6I	GCGC	6 cut(s)	571, 573, 1055, 1462, 2359, 2571
HinP1I	GCGC	6 cut(s)	571, 573, 1055, 1462, 2359, 2571
HincII	GTYRAC	1 cut(s)	451
HindII	GTYRAC	1 cut(s)	451
HindIII	AAGCTT	3 cut(s)	440, 2007, 2822
HpaII	CCGG	6 cut(s)	161, 182, 1259, 1434, 2277, 2319
HphI	GGTGA	8 cut(s)	806, 1073, 1148, 1551, 1730, 1874, 2173, 3436
Hpy166II	GTNNAC	3 cut(s)	451, 1007, 1217
Hpy8I	GTNNAC	3 cut(s)	451, 1007, 1217
Hpy99I	CGWCG	2 cut(s)	59, 794
HpyCH4IV	ACGT	6 cut(s)	328, 712, 1399, 2545, 3128, 3681
HpySE526I	ACGT	6 cut(s)	328, 712, 1399, 2545, 3128, 3681
Hsp92I	GRCGYC	1 cut(s)	1462
HspAI	GCGC	6 cut(s)	571, 573, 1055, 1462, 2359, 2571
KasI	GGCGCC	1 cut(s)	1461
KflI	GGGWCCC	1 cut(s)	2797
Ksp22I	TGATCA	3 cut(s)	403, 1930, 2082
LmnI	GCTCC	4 cut(s)	235, 1999, 3281, 3595
LweI	GCATC	6 cut(s)	558, 694, 956, 1276, 2678, 3289
MaeI	CTAG	8 cut(s)	728, 909, 951, 1583, 2772, 2829, 3159, 3188
MaeII	ACGT	6 cut(s)	328, 712, 1399, 2545, 3128, 3681
MaeIII	GTNAC	9 cut(s)	283, 641, 2026, 2149, 2341, 2408, 2845, 2971, 3027
MbiI	CCGCTC	1 cut(s)	2002
MflI	RGATCY	2 cut(s)	295, 3155
MhlI	GDGCHC	5 cut(s)	735, 1629, 1852, 2473, 3286
MlsI	TGGCCA	3 cut(s)	1252, 1270, 2349
MluNI	TGGCCA	3 cut(s)	1252, 1270, 2349
Mly113I	GGCGCC	1 cut(s)	1462
MlyI	GAGTC	5 cut(s)	145, 1222, 1585, 1773, 2609
MmeI	TCCRAC	2 cut(s)	1953, 3376
Mox20I	TGGCCA	3 cut(s)	1252, 1270, 2349
Mph1103I	ATGCAT	1 cut(s)	709
MroXI	GAANNNNTTC	4 cut(s)	1420, 1510, 1552, 3237
MscI	TGGCCA	3 cut(s)	1252, 1270, 2349
MslI	CAYNNNNRTG	6 cut(s)	696, 702, 1002, 1083, 1086, 2981
Msp20I	TGGCCA	3 cut(s)	1252, 1270, 2349
MspA1I	CMGCKG	7 cut(s)	616, 1622, 1790, 2258, 2492, 2854, 3278
MspI	CCGG	6 cut(s)	161, 182, 1259, 1434, 2277, 2319
Mva1269I	GAATGC	2 cut(s)	134, 3237
MvaI	CCWGG	8 cut(s)	762, 825, 1563, 1747, 2136, 2240, 2598, 3153
MvnI	CGCG	3 cut(s)	209, 573, 2573
NarI	GGCGCC	1 cut(s)	1462
NciI	CCSGG	2 cut(s)	2277, 2319
NcoI	CCATGG	1 cut(s)	3262
NheI	GCTAGC	1 cut(s)	2771
NlaIV	GGNNCC	5 cut(s)	1463, 2323, 2798, 2799, 3717
NmuCI	GTSAC	4 cut(s)	283, 2408, 2845, 2971
NsiI	ATGCAT	1 cut(s)	709
NspI	RCATGY	3 cut(s)	291, 1050, 1948
NspV	TTCGAA	1 cut(s)	2387
OliI	CACNNNNGTG	1 cut(s)	2981
PagI	TCATGA	5 cut(s)	697, 997, 1167, 1654, 2418
PasI	CCCWGGG	1 cut(s)	2135
PauI	GCGCGC	1 cut(s)	571
PceI	AGGCCT	2 cut(s)	986, 1591
PciI	ACATGT	2 cut(s)	287, 1944
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PctI	GAATGC	2 cut(s)	134, 3237
PdmI	GAANNNNTTC	4 cut(s)	1420, 1510, 1552, 3237
PflFI	GACNNNGTC	1 cut(s)	1672
PflMI	CCANNNNNTGG	1 cut(s)	3453
PfoI	TCCNGGA	1 cut(s)	3151
Ple19I	CGATCG	1 cut(s)	49
PleI	GAGTC	5 cut(s)	145, 1221, 1584, 1772, 2609
PluTI	GGCGCC	1 cut(s)	1465
PpsI	GAGTC	5 cut(s)	145, 1221, 1584, 1772, 2609
Ppu21I	YACGTR	2 cut(s)	713, 1400
PpuMI	RGGWCCY	3 cut(s)	523, 2797, 3716
PscI	ACATGT	2 cut(s)	287, 1944
PshBI	ATTAAT	1 cut(s)	338
Psp124BI	GAGCTC	2 cut(s)	735, 2473
Psp1406I	AACGTT	1 cut(s)	3128
Psp5II	RGGWCCY	3 cut(s)	523, 2797, 3716
Psp6I	CCWGG	8 cut(s)	760, 823, 1561, 1745, 2134, 2238, 2596, 3151
PspFI	CCCAGC	1 cut(s)	1937
PspGI	CCWGG	8 cut(s)	760, 823, 1561, 1745, 2134, 2238, 2596, 3151
PspN4I	GGNNCC	5 cut(s)	1463, 2323, 2798, 2799, 3717
PspPI	GGNCC	8 cut(s)	500, 523, 1341, 2105, 2396, 2594, 2797, 3716
PspPPI	RGGWCCY	3 cut(s)	523, 2797, 3716
PstI	CTGCAG	2 cut(s)	2404, 2491
PsuI	RGATCY	2 cut(s)	295, 3155
PsyI	GACNNNGTC	1 cut(s)	1672
PteI	GCGCGC	1 cut(s)	571
PvuI	CGATCG	1 cut(s)	49
PvuII	CAGCTG	4 cut(s)	1622, 1790, 2492, 3278
RsaI	GTAC	6 cut(s)	495, 1008, 1527, 1943, 2544, 3375
RsaNI	GTAC	6 cut(s)	494, 1007, 1526, 1942, 2543, 3374
RseI	CAYNNNNRTG	6 cut(s)	696, 702, 1002, 1083, 1086, 2981
SacI	GAGCTC	2 cut(s)	735, 2473
Sau96I	GGNCC	8 cut(s)	500, 523, 1341, 2105, 2396, 2594, 2797, 3716
ScaI	AGTACT	1 cut(s)	3375
SchI	GAGTC	5 cut(s)	145, 1222, 1585, 1773, 2609
SduI	GDGCHC	5 cut(s)	735, 1629, 1852, 2473, 3286
SfaNI	GCATC	6 cut(s)	558, 694, 956, 1276, 2678, 3289
SfcI	CTRYAG	6 cut(s)	90, 201, 273, 2400, 2487, 2886
SfoI	GGCGCC	1 cut(s)	1463
SfuI	TTCGAA	1 cut(s)	2387
SinI	GGWCC	6 cut(s)	523, 1341, 2396, 2594, 2797, 3716
SmiMI	CAYNNNNRTG	6 cut(s)	696, 702, 1002, 1083, 1086, 2981
SmlI	CTYRAG	2 cut(s)	2362, 2812
SmoI	CTYRAG	2 cut(s)	2362, 2812
SseBI	AGGCCT	2 cut(s)	986, 1591
SspDI	GGCGCC	1 cut(s)	1461
SspI	AATATT	1 cut(s)	1441
SspMI	CTAG	8 cut(s)	728, 909, 951, 1583, 2772, 2829, 3159, 3188
SstI	GAGCTC	2 cut(s)	735, 2473
StuI	AGGCCT	2 cut(s)	986, 1591
StyI	CCWWGG	5 cut(s)	561, 1247, 1995, 2205, 3262
TaiI	ACGT	6 cut(s)	331, 715, 1402, 2548, 3131, 3684
TaqII	GACCGA	1 cut(s)	3133
TatI	WGTACW	4 cut(s)	493, 1006, 1525, 3373
TauI	GCSGC	3 cut(s)	62, 2005, 2238
TseFI	GTSAC	4 cut(s)	283, 2408, 2845, 2971
Tsp45I	GTSAC	4 cut(s)	283, 2408, 2845, 2971
TspGWI	ACGGA	4 cut(s)	1115, 1378, 1821, 3644
Tth111I	GACNNNGTC	1 cut(s)	1672
Van91I	CCANNNNNTGG	1 cut(s)	3453
VpaK11BI	GGWCC	6 cut(s)	523, 1341, 2396, 2594, 2797, 3716
VspI	ATTAAT	1 cut(s)	338
XagI	CCTNNNNNAGG	2 cut(s)	565, 3041
XbaI	TCTAGA	1 cut(s)	3158
XceI	RCATGY	3 cut(s)	291, 1050, 1948
XmnI	GAANNNNTTC	4 cut(s)	1420, 1510, 1552, 3237
XspI	CTAG	8 cut(s)	728, 909, 951, 1583, 2772, 2829, 3159, 3188
ZrmI	AGTACT	1 cut(s)	3375
Zsp2I	ATGCAT	1 cut(s)	709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.