Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000879.1

Orthogroup ID

OG0004789

Physical Location & Seq

Genomic Coordinates Reverse (-)

158701 .. 161977

Gene Structure 3277 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000879.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

atgcatgtgttgaaacatgatgaagctaaggttgttcaatcagatagtatactaaatattagatatggaatttctggtgatagaacagctggagcgcacccacctgtggcttttgggcctgagggtgctggacaggatctgattttcaggagtgctcttgttttgcaaaggcctgtgcttgatccagtcctggccgttggttttcttcctctcccctctagtggccttagggttggccagctagttaccatgaaatggagggttgaaagattaaaggattttgaagagaatgaactttcccataacaatgatgaggtgttatatgaagtcaatgcaaacactgaaagttggatggttgctgggaggaaaagagggcatgtctctctctctgcaaagcaaggttcaaggatagagatttcaatactatgtgtgcctctggtggcgggatacgttcgtccccctcaacttggtttgccaaatgttgatgaatcaaatataagttgcaatcctgcagggcctcatttggtttgtgtcttgcctccaactttgagttcgtctttctgcattcctgcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006891 GO:0007049 GO:0008150 GO:0009987 GO:0012505 GO:0016043 GO:0016192 GO:0016197 GO:0016482 GO:0022402 GO:0022607 GO:0030008 GO:0031410 GO:0031982 GO:0031984 GO:0032506 GO:0032991 GO:0034498 GO:0042147 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051301 GO:0051641 GO:0051649 GO:0061640 GO:0071840 GO:0097708 GO:0098791 GO:0099023 GO:1902410 GO:1903047 GO:1990071

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Foie-gras_1 TRAPPC10

Protein Analysis

191

Amino Acids

20.68

Weight (kDa)

6.29

Isoelectric Point (pI)

56.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54440 AT5G54440 AT5G54440
fragaria_vesca	FvH4_3g20750 FvH4_3g20750 FvH4_3g20750 FvH4_3g20750
malus_domestica	MD03G1222200.v1.1 MD11G1239600.v1.1
prunus_persica	Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1
pyrus_communis	pycom03g17080 pycom11g21130
rosa_chinensis	RchiOBHm_Chr5g0034971
rosa_laevigata	RLG00000033586 RLG00000033589
rosa_multiflora	Rmu_co8343959.1_g000001 Rmu_sc0000879.1_g000039 Rmu_sc0021290.1_g000001
rosa_roxburghii	Rroxscaffold_1G00045410
rosa_rugosa	Rorug05G0149100 Rorug05G0149200 Rorug05G0149300
rosa_samantha	Rh5AG242200 Rh5BG241800 Rh5CG273300 Rh5DG250400
rosa_wichuraiana	Rw5G022120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	255
AccI	GTMKAC	1 cut(s)	49
AciI	CCGC	1 cut(s)	443
AclWI	GGATC	2 cut(s)	144, 176
AcoI	YGGCCR	2 cut(s)	192, 235
AcsI	RAATTY	1 cut(s)	69
AfiI	CCNNNNNNNGG	4 cut(s)	106, 221, 255, 467
AgsI	TTSAA	6 cut(s)	13, 38, 266, 284, 405, 420
AjnI	CCWGG	1 cut(s)	189
AjuI	GAANNNNNNNTTGG	2 cut(s)	535, 567
AluBI	AGCT	3 cut(s)	26, 89, 241
AluI	AGCT	3 cut(s)	26, 89, 241
Alw21I	GWGCWC	1 cut(s)	157
Alw26I	GTCTC	1 cut(s)	385
AlwI	GGATC	2 cut(s)	144, 176
AlwNI	CAGNNNCTG	1 cut(s)	139
AoxI	GGCC	6 cut(s)	116, 170, 192, 223, 235, 515
ApoI	RAATTY	1 cut(s)	69
AspLEI	GCGC	1 cut(s)	97
AspS9I	GGNCC	2 cut(s)	116, 515
AsuHPI	GGTGA	1 cut(s)	89
AxyI	CCTNAGG	2 cut(s)	120, 227
BaeI	ACNNNNGTAYC	2 cut(s)	439, 472
BalI	TGGCCA	1 cut(s)	237
Bbv12I	GWGCWC	1 cut(s)	157
BccI	CCATC	1 cut(s)	346
BceAI	ACGGC	1 cut(s)	179
BciT130I	CCWGG	1 cut(s)	191
BciVI	GTATCC	1 cut(s)	440
BcoDI	GTCTC	1 cut(s)	385
BfaI	CTAG	2 cut(s)	219, 242
BfmI	CTRYAG	1 cut(s)	510
BfuI	GTATCC	1 cut(s)	440
Bme1390I	CCNGG	1 cut(s)	191
BmgT120I	GGNCC	2 cut(s)	116, 515
BmrFI	CCNGG	1 cut(s)	191
BpmI	CTGGAG	1 cut(s)	111
Bpu10I	CCTNAGC	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	4 cut(s)	106, 221, 255, 467
Bse1I	ACTGG	1 cut(s)	185
Bse21I	CCTNAGG	2 cut(s)	120, 227
BseBI	CCWGG	1 cut(s)	191
BseGI	GGATG	1 cut(s)	357
BseLI	CCNNNNNNNGG	4 cut(s)	106, 221, 255, 467
BseMII	CTCAG	1 cut(s)	111
BseNI	ACTGG	1 cut(s)	185
BseYI	CCCAGC	1 cut(s)	359
BshFI	GGCC	6 cut(s)	118, 172, 194, 225, 237, 517
BsiHKAI	GWGCWC	1 cut(s)	157
BslFI	GGGAC	1 cut(s)	441
BslI	CCNNNNNNNGG	4 cut(s)	106, 221, 255, 467
BsmAI	GTCTC	1 cut(s)	385
BsmFI	GGGAC	1 cut(s)	441
BsmI	GAATGC	1 cut(s)	564
BsnI	GGCC	6 cut(s)	118, 172, 194, 225, 237, 517
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp143I	GATC	2 cut(s)	136, 181
BspACI	CCGC	1 cut(s)	443
BspANI	GGCC	6 cut(s)	118, 172, 194, 225, 237, 517
BspCNI	CTCAG	1 cut(s)	112
BspMAI	CTGCAG	1 cut(s)	514
BspPI	GGATC	2 cut(s)	144, 176
BsrI	ACTGG	1 cut(s)	185
BssMI	GATC	2 cut(s)	136, 181
BssNAI	GTATAC	1 cut(s)	50
Bst1107I	GTATAC	1 cut(s)	50
Bst2UI	CCWGG	1 cut(s)	191
Bst6I	CTCTTC	1 cut(s)	279
BstC8I	GCNNGC	1 cut(s)	239
BstDEI	CTNAG	3 cut(s)	27, 120, 227
BstF5I	GGATG	1 cut(s)	357
BstHHI	GCGC	1 cut(s)	97
BstKTI	GATC	2 cut(s)	139, 184
BstMAI	GTCTC	1 cut(s)	385
BstMBI	GATC	2 cut(s)	136, 181
BstNI	CCWGG	1 cut(s)	191
BstNSI	RCATGY	2 cut(s)	8, 380
BstSCI	CCNGG	1 cut(s)	189
BstSFI	CTRYAG	1 cut(s)	510
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
BstZ17I	GTATAC	1 cut(s)	50
Bsu36I	CCTNAGG	2 cut(s)	120, 227
BsuI	GTATCC	1 cut(s)	440
BsuRI	GGCC	6 cut(s)	118, 172, 194, 225, 237, 517
BtsCI	GGATG	1 cut(s)	357
BtsIMutI	CAGTG	1 cut(s)	339
Cac8I	GCNNGC	1 cut(s)	239
CaiI	CAGNNNCTG	1 cut(s)	139
CfoI	GCGC	1 cut(s)	97
Cfr13I	GGNCC	2 cut(s)	116, 515
CviAII	CATG	5 cut(s)	5, 17, 250, 377, 573
DdeI	CTNAG	3 cut(s)	27, 120, 227
DpnI	GATC	2 cut(s)	138, 183
DpnII	GATC	2 cut(s)	136, 181
EaeI	YGGCCR	2 cut(s)	192, 235
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
Eco147I	AGGCCT	1 cut(s)	172
Eco81I	CCTNAGG	2 cut(s)	120, 227
EcoO109I	RGGNCCY	1 cut(s)	515
EcoRII	CCWGG	1 cut(s)	189
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	5 cut(s)	8, 20, 253, 380, 576
FaqI	GGGAC	1 cut(s)	441
FatI	CATG	5 cut(s)	4, 16, 249, 376, 572
FauI	CCCGC	1 cut(s)	436
FblI	GTMKAC	1 cut(s)	49
FokI	GGATG	1 cut(s)	364
FspBI	CTAG	2 cut(s)	219, 242
GlaI	GCGC	1 cut(s)	96
GsaI	CCCAGC	1 cut(s)	363
GsuI	CTGGAG	1 cut(s)	111
HaeIII	GGCC	6 cut(s)	118, 172, 194, 225, 237, 517
HhaI	GCGC	1 cut(s)	97
Hin1II	CATG	5 cut(s)	8, 20, 253, 380, 576
Hin6I	GCGC	1 cut(s)	95
HinP1I	GCGC	1 cut(s)	95
HinfI	GANTC	1 cut(s)	488
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	1 cut(s)	50
Hpy188I	TCNGA	2 cut(s)	43, 141
Hpy188III	TCNNGA	1 cut(s)	148
Hpy8I	GTNNAC	1 cut(s)	50
HpyCH4IV	ACGT	1 cut(s)	450
HpyCH4V	TGCA	8 cut(s)	4, 166, 335, 392, 504, 512, 564, 572
HpyF3I	CTNAG	3 cut(s)	27, 120, 227
HpySE526I	ACGT	1 cut(s)	450
Hsp92II	CATG	5 cut(s)	8, 20, 253, 380, 576
HspAI	GCGC	1 cut(s)	95
Kzo9I	GATC	2 cut(s)	136, 181
LmnI	GCTCC	1 cut(s)	92
MaeI	CTAG	2 cut(s)	219, 242
MaeII	ACGT	1 cut(s)	450
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	2 cut(s)	138, 183
MboI	GATC	2 cut(s)	136, 181
MboII	GAAGA	2 cut(s)	197, 296
MflI	RGATCY	1 cut(s)	136
MhlI	GDGCHC	1 cut(s)	157
MlsI	TGGCCA	1 cut(s)	237
MluCI	AATT	1 cut(s)	69
MluNI	TGGCCA	1 cut(s)	237
MmeI	TCCRAC	2 cut(s)	329, 566
Mox20I	TGGCCA	1 cut(s)	237
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	237
MseI	TTAA	1 cut(s)	272
MslI	CAYNNNNRTG	1 cut(s)	306
Msp20I	TGGCCA	1 cut(s)	237
MspA1I	CMGCKG	1 cut(s)	89
MspR9I	CCNGG	1 cut(s)	191
Mva1269I	GAATGC	1 cut(s)	564
MvaI	CCWGG	1 cut(s)	191
NdeII	GATC	2 cut(s)	136, 181
NlaIII	CATG	5 cut(s)	8, 20, 253, 380, 576
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	8, 380
PceI	AGGCCT	1 cut(s)	172
PctI	GAATGC	1 cut(s)	564
PfeI	GAWTC	1 cut(s)	488
PflMI	CCANNNNNTGG	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	189
PspFI	CCCAGC	1 cut(s)	359
PspGI	CCWGG	1 cut(s)	189
PspPI	GGNCC	2 cut(s)	116, 515
PstI	CTGCAG	1 cut(s)	514
PstNI	CAGNNNCTG	1 cut(s)	139
PsuI	RGATCY	1 cut(s)	136
PvuII	CAGCTG	1 cut(s)	89
RseI	CAYNNNNRTG	1 cut(s)	306
SaqAI	TTAA	1 cut(s)	272
Sau3AI	GATC	2 cut(s)	136, 181
Sau96I	GGNCC	2 cut(s)	116, 515
SbfI	CCTGCAGG	1 cut(s)	514
ScrFI	CCNGG	1 cut(s)	191
SdaI	CCTGCAGG	1 cut(s)	514
SduI	GDGCHC	1 cut(s)	157
SetI	ASST	8 cut(s)	28, 33, 91, 106, 243, 318, 403, 453
SfcI	CTRYAG	1 cut(s)	510
SmiMI	CAYNNNNRTG	1 cut(s)	306
Sse8387I	CCTGCAGG	1 cut(s)	514
Sse9I	AATT	1 cut(s)	69
SseBI	AGGCCT	1 cut(s)	172
SsiI	CCGC	1 cut(s)	443
SspI	AATATT	1 cut(s)	58
SspMI	CTAG	2 cut(s)	219, 242
StuI	AGGCCT	1 cut(s)	172
StyD4I	CCNGG	1 cut(s)	189
TaiI	ACGT	1 cut(s)	453
TasI	AATT	1 cut(s)	69
TfiI	GAWTC	1 cut(s)	488
Tru1I	TTAA	1 cut(s)	272
Tru9I	TTAA	1 cut(s)	272
TscAI	CASTG	1 cut(s)	346
TspDTI	ATGAA	5 cut(s)	36, 266, 306, 339, 501
TspRI	CASTG	1 cut(s)	346
Van91I	CCANNNNNTGG	1 cut(s)	255
XapI	RAATTY	1 cut(s)	69
XceI	RCATGY	2 cut(s)	8, 380
XmiI	GTMKAC	1 cut(s)	49
XspI	CTAG	2 cut(s)	219, 242
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.