Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0004789

Physical Location & Seq

Genomic Coordinates Forward (+)

28885903 .. 28901067

Gene Structure 15165 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG250400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3498 bp

ATGGCCAACTATCTCGCTCAGTTCCAGACCATCAAGAATTCACTCGATCATCTCGTTATTGCTGTTGAAGATGTTAGTGATTTGTGGCCTACTGTCAAGAAGGGATTTGAGGAGCACTTGCCTTTCAAAAGAGCTTGTTTAAATAACAAGACCCGTAATCCTGTGTTTGTGGAGAATTTCCGTGCTGAATTCATATTAACAACAGATGCAAGACTTCGCAGCCGATTCCCACAGGAGCAGTCATTGTTTTGGTTTCGGGAGCCATATGCAACTGCAGTCCTCGTCACCTGTGAGGATCTTGATGAATTCAAGACCATTCTCAAACCACGGCTAAAACTAATTGTCCAAAATGATGAACGGGAATGGTTTATTGTTTTTGTATCCAAGGCACATCCAAGCAATGATCAAGCCACCAAATTGGCAAATAAAGTATATGCCAAACTTGAAGTTGATTTTAGCTCCAAGAAGAGAGAAAGGTGCTGCAAATTCGACCTATATAGTGCTGAAGAAACCTTTTGGGAAGACTTGGAATCCAAGATAATGGAGTGCATCAGAAATACATTGGATAGACGTGCACAGTTTTATGAGGATGAGATACGCAAGCTCAGTGAACAACGCTTCATGCCAGTTTGGAATTTCTGCAACTTTTTTATTTTGAAGGAAAGCTTGGCTTTTATGTTTGAGATGGCTCATCTTTATGAAGATTCACTACGTGAATATGATGAGCTAGAAATTTGTTATTTGGAAACAGTTGAAATGACCGGAAAACGGAGGGACTTTGGTGGAGTTGACCACGGTGATGATCAAGCATCATTGCTTAATTCCGGAAACAAACCATTGACACAAATTGTTCAAGATGACTCATTTAGGGAATTCGAATTTAGACAGTATCTGTTTGCTTGTCAATCAAAGCTATTATTCAAGCTGAATCGCCCCTATGAGGTTGCGTCAAGGGGATACTCATTCATTATAAGCTTTTCAAAGGCGCTGGCTGTACGTGAGAATAGCCTACCTTTTTGTATGCGTGAAGTTTGGGTTATAACAGCTTGCATGTCCGTAGTCCATGCAACTGCTTCACATTATAAGGAAGGACTTGCAGCAGCTGATATAGAAAAGGAGTTCTACCGCCTTCAAGGTGATCTTTACTCACTATGCAGGGTCAAGTTCATGAGGCTTGCGTATTTAATTGGATATGGCACAAATATGGAAAGAAGTCCTGGCAACAGTGCTTCACTCAGCATGCTACCTTGGCCCAAGCCAGCAATTTGGCCTTCAGTTCCACCTGATGCTTCTTCTGAGGTGCTAGCAAAAGAAAAGATAATTCTACAGGCAACTCCAGCTACCAAGCACTTTGGTATTCAAAGAAAACCATTGCCTCTTGAACCTTCTGTACTACTGCGTGAGGCGAATCGGAGGAGAGCTTCTCTCTCTGCTGGAAATATGTTTGAAATGCTTGATGGTCGCCAAGCTTTGACTGATGGTTCAGGTTCAGATGCATCAATTAAGATGCCCTCATTACAAAAAGTACAAGCAAGTGTTATGTCGCGTACAAACTCTTCGCCAGGAATGTTTGAGGGCTCAATTGATCGGCCCATGAGACTTGCAGAGATTTATGTTGCAGCTGAACATGCTCTGCAAAGTACAATTTCTAATACTGATCTATGGAAGTCTTTGTCATCTACAGAGGAGTTTGAGCAAAAATATTTGGAGCTAACTAAGGGTGCTGCTGACAATTACCATCGATCCTGGTGGAAAAGGCATGGAGTTGTCCTTGATGGAGAAATTGCAGCAGTCTTGTTTAAGCATGGAAACTTTGATCTAGCTGCAAAGTCATATGAAAAGGTTTGTGCTCTTTATGCGGGTGAAGGATGGCAAGATTTGTTGGCAGAAGTCCTGCCCAACTTAGCAGAGTGTCAGAAGACACTCAATGACCAAGCTGGCTATCTATCTTCTTGCGTGAGGCTTCTTTCATTGGATAAAGGCTTGTTTTTAACCAAAGAACGCCAGGCTTTTCAGTCTGAGGTTGTTCATCTTGCACATGCTGAAATGAAGCAACCTGTGCCACTGGATGTATCATCATTAATTACATTCTCTGGTAATCCTGGGCCTCCATTAGAATTATGTGATGGGGATCCTGGTACTCTATCTGTGACATTTTGGAGTGGCTTTCCTGATGACATAACTCTTGATTCCCTAAATCTCACATTGAATGCAATTTTCAATACTGATGAGGTTGCTAAGGCACTATGGAGCTCTACTGCTATTGTATTAAAGCCTGGTCGGAATACCGTTACTCTAGATTTACCGCCCCAAAAACCAGGTTCATATGTTTTGGGGGTTCTTACCGGGCAGATTGGGCAGTTAAGATTCAGGTCTCATAGCTTTTCCAAAGGAGGCCCTGAAGACAGCGAGGATTTTATGAGTTATGAAAAGCCTCCTAGGCCAGTTTTAAAGGTTTCCAAAGTGCGACCTCTTGTTGATCTTGCTGCAGCTATTTCATCTGCCCTGCTTATAAATGAAACTCAATGGGTTGGGATTATAGTAAGGCCCATTAACTACTCCCTCAAAGGTGCTGCCTTGTATGTTGATACTGGTCCTGGCCTTAAAATTGAAGAGTCACATTTCATTGAGATGGAGAGCTACAGTGATGAATCAAATAGTTCGGTTGAGCAGTTGGCTCTTTCTGGTGATAGAGTAGAGTTTCCAGATTGGGCAAGTAATTTGCCTTCTATTGTATGGATTCCAATTCGTGCTATCAGCGAAACACTTGCAAGAGGATCATCTTCAGTGGCTCCCCAAAGACAGATCAATTTGGATGGAATGAGGACAATAGCACTAAAACTTGAATTTGGAGCATCTCACAATCAGATTTTTGAGAGGACCCTAGCTGTGCATTTTACCGATCCTTTCCATGTGAGCACACGAGTTGCAGATAAATGCAATGATGGAACTTTGCTTCTACAGGTGATTTTACACTCTGAAGTGAAAGCCACATTGACGATTTATGATGCTTGGCTTGATCTTCAAGATGGATTTGTTAATACTGGACAAAGTGATGGGAGACCAACTTCTGCCTACTTTCCACTCGTTGTTTCTCCAAATTCTAGAGCAGGAATATTATTCAGTATATGCTTAGGGAAGACAAATTCTGAAGATGAAGCTAAGGTTGTTCAATCAGATAGTATACTAAATATTAGATATGGAATTTCTGGTGATAGAACAGCTGGAGCGCACCCACCTGTGGCTTTTGGGTCTGAGGGTGCTGGACAGGATCTGATTTTCAGGAGTGCTCTTGTTTTGCAAAGGCCTGTGCTTGATCCAGTCCTGGCCGTTGGTTTTCTTCCTCTCCCTTCTAGTGGCCTTAGGGTTGGCCAGCTAGTTACCATGAAATGGAGGGTTGAAAGATTAAAGGATTTTGAAGAGAATGAACTTTCCCATAACAATGTAAGTCATGACGTGATCTCTGTGAACAAGCTAGATATGATGACTAAATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006891 GO:0007049 GO:0008150 GO:0009987 GO:0012505 GO:0016043 GO:0016192 GO:0016197 GO:0016482 GO:0022402 GO:0022607 GO:0030008 GO:0031410 GO:0031982 GO:0031984 GO:0032506 GO:0032991 GO:0034498 GO:0042147 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051301 GO:0051641 GO:0051649 GO:0061640 GO:0071840 GO:0097708 GO:0098791 GO:0099023 GO:1902410 GO:1903047 GO:1990071

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Foie-gras_1 TRAPPC10

Protein Analysis

1165

Amino Acids

130.81

Weight (kDa)

5.65

Isoelectric Point (pI)

42.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAPPC10_1st	PF23036	17 - 316	1.9e-51	Trafficking protein particle complex subunit 10-like, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54440 AT5G54440 AT5G54440
fragaria_vesca	FvH4_3g20750 FvH4_3g20750 FvH4_3g20750 FvH4_3g20750
malus_domestica	MD03G1222200.v1.1 MD11G1239600.v1.1
prunus_persica	Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1
pyrus_communis	pycom03g17080 pycom11g21130
rosa_chinensis	RchiOBHm_Chr5g0034971
rosa_laevigata	RLG00000033586 RLG00000033589
rosa_multiflora	Rmu_co8343959.1_g000001 Rmu_sc0000879.1_g000039 Rmu_sc0021290.1_g000001
rosa_roxburghii	Rroxscaffold_1G00045410
rosa_rugosa	Rorug05G0149100 Rorug05G0149200 Rorug05G0149300
rosa_samantha	Rh5AG242200 Rh5BG241800 Rh5CG273300 Rh5DG250400
rosa_wichuraiana	Rw5G022120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	971, 1040, 1083, 2513
AccB7I	CCANNNNNTGG	1 cut(s)	3390
AccI	GTMKAC	1 cut(s)	3184
AccII	CGCG	1 cut(s)	1546
AccIII	TCCGGA	1 cut(s)	824
AciI	CCGC	3 cut(s)	1126, 1859, 2306
AclWI	GGATC	8 cut(s)	303, 1737, 2126, 2139, 2785, 2897, 3279, 3311
AcoI	YGGCCR	3 cut(s)	3, 3327, 3370
AcuI	CTGAAG	6 cut(s)	525, 1257, 2421, 2769, 3000, 3171
AdeI	CACNNNGTG	1 cut(s)	713
AfaI	GTAC	6 cut(s)	996, 1392, 1527, 1549, 1642, 2140
AfiI	CCNNNNNNNGG	5 cut(s)	768, 940, 3241, 3356, 3390
AjiI	CACGTC	2 cut(s)	572, 3457
AjuI	GAANNNNNNNTTGG	2 cut(s)	650, 682
Alw21I	GWGCWC	6 cut(s)	117, 577, 1852, 2255, 2921, 3292
Alw26I	GTCTC	3 cut(s)	1591, 2379, 3055
Alw44I	GTGCAC	1 cut(s)	573
AlwI	GGATC	8 cut(s)	303, 1737, 2126, 2139, 2785, 2897, 3279, 3311
AlwNI	CAGNNNCTG	3 cut(s)	892, 1103, 3274
Aor13HI	TCCGGA	1 cut(s)	824
ApaLI	GTGCAC	1 cut(s)	573
AseI	ATTAAT	1 cut(s)	2081
AspA2I	CCTAGG	1 cut(s)	2438
AspLEI	GCGC	2 cut(s)	988, 3232
AspS9I	GGNCC	7 cut(s)	1251, 1590, 2105, 2396, 2547, 2594, 2880
AsuC2I	CCSGG	1 cut(s)	2347
AsuHPI	GGTGA	7 cut(s)	277, 809, 1148, 1874, 2699, 2977, 3224
AsuII	TTCGAA	1 cut(s)	876
AsuNHI	GCTAGC	1 cut(s)	1303
AvaII	GGWCC	2 cut(s)	2594, 2880
AvrII	CCTAGG	1 cut(s)	2438
AxyI	CCTNAGG	1 cut(s)	3362
BaeGI	GKGCMC	1 cut(s)	577
BalI	TGGCCA	2 cut(s)	5, 3372
BamHI	GGATCC	1 cut(s)	2131
BanII	GRGCYC	2 cut(s)	1580, 2255
BarI	GAAGNNNNNNTAC	6 cut(s)	693, 725, 1540, 1572, 2710, 2742
BauI	CACGAG	1 cut(s)	2922
BbsI	GAAGAC	4 cut(s)	528, 1925, 2409, 3146
Bbv12I	GWGCWC	6 cut(s)	117, 577, 1852, 2255, 2921, 3292
BceAI	ACGGC	2 cut(s)	344, 3314
BcgI	CGANNNNNNTGC	2 cut(s)	2750, 2784
BciVI	GTATCC	2 cut(s)	391, 950
BclI	TGATCA	2 cut(s)	403, 802
BcnI	CCSGG	1 cut(s)	2347
BcoDI	GTCTC	3 cut(s)	1591, 2379, 3055
BfmI	CTRYAG	6 cut(s)	273, 1325, 1680, 2487, 2641, 2960
BfoI	RGCGCY	1 cut(s)	989
BfuI	GTATCC	2 cut(s)	391, 950
BglI	GCCNNNNNGGC	1 cut(s)	2440
BlnI	CCTAGG	1 cut(s)	2438
Bme18I	GGWCC	2 cut(s)	2594, 2880
BmgBI	CACGTC	2 cut(s)	572, 3457
BmgT120I	GGNCC	7 cut(s)	1251, 1590, 2105, 2396, 2547, 2594, 2880
BmiI	GGNNCC	4 cut(s)	261, 2133, 2793, 2882
BmsI	GCATC	9 cut(s)	196, 558, 818, 1276, 1483, 1497, 1505, 2864, 2998
BmtI	GCTAGC	1 cut(s)	1307
BpiI	GAAGAC	4 cut(s)	528, 1925, 2409, 3146
BplI	GAGNNNNNCTC	4 cut(s)	1408, 1440, 1410, 1442
BpmI	CTGGAG	2 cut(s)	1320, 3246
Bpu10I	CCTNAGC	3 cut(s)	2238, 3133, 3162
Bpu14I	TTCGAA	1 cut(s)	876
BpuMI	CCSGG	1 cut(s)	2347
Bsa29I	ATCGAT	1 cut(s)	1741
BsaAI	YACGTR	2 cut(s)	713, 998
BsaBI	GATNNNNATC	1 cut(s)	2130
BsaI	GGTCTC	2 cut(s)	2379, 3055
BsaJI	CCNNGG	6 cut(s)	326, 384, 793, 1247, 2102, 2438
BsaWI	WCCGGW	2 cut(s)	761, 824
Bsc4I	CCNNNNNNNGG	5 cut(s)	768, 940, 3241, 3356, 3390
Bse1I	ACTGG	6 cut(s)	626, 2070, 2444, 2596, 3049, 3320
Bse21I	CCTNAGG	1 cut(s)	3362
Bse3DI	GCAATG	4 cut(s)	406, 812, 1370, 2947
Bse8I	GATNNNNATC	1 cut(s)	2130
BseAI	TCCGGA	1 cut(s)	824
BseCI	ATCGAT	1 cut(s)	1741
BseDI	CCNNGG	6 cut(s)	326, 384, 793, 1247, 2102, 2438
BseGI	GGATG	5 cut(s)	391, 595, 1874, 2074, 2821
BseJI	GATNNNNATC	1 cut(s)	2130
BseLI	CCNNNNNNNGG	5 cut(s)	768, 940, 3241, 3356, 3390
BseMI	GCAATG	4 cut(s)	406, 812, 1370, 2947
BseMII	CTCAG	6 cut(s)	32, 619, 1249, 1287, 2010, 3246
BseNI	ACTGG	6 cut(s)	626, 2070, 2444, 2596, 3049, 3320
BseRI	GAGGAG	3 cut(s)	125, 1429, 1700
BseSI	GKGCMC	1 cut(s)	577
Bsh1236I	CGCG	1 cut(s)	1546
BshVI	ATCGAT	1 cut(s)	1741
BsiHKAI	GWGCWC	6 cut(s)	117, 577, 1852, 2255, 2921, 3292
BsiSI	CCGG	3 cut(s)	762, 825, 2346
BslFI	GGGAC	1 cut(s)	788
BslI	CCNNNNNNNGG	5 cut(s)	768, 940, 3241, 3356, 3390
BsmAI	GTCTC	3 cut(s)	1591, 2379, 3055
BsmFI	GGGAC	1 cut(s)	788
BsmI	GAATGC	1 cut(s)	2215
Bso31I	GGTCTC	2 cut(s)	2379, 3055
Bsp119I	TTCGAA	1 cut(s)	876
Bsp1286I	GDGCHC	7 cut(s)	117, 577, 1580, 1852, 2255, 2921, 3292
Bsp13I	TCCGGA	1 cut(s)	824
BspACI	CCGC	3 cut(s)	1126, 1859, 2306
BspCNI	CTCAG	6 cut(s)	31, 618, 1248, 1288, 2011, 3247
BspDI	ATCGAT	1 cut(s)	1741
BspEI	TCCGGA	1 cut(s)	824
BspFNI	CGCG	1 cut(s)	1546
BspHI	TCATGA	2 cut(s)	1167, 3451
BspLI	GGNNCC	4 cut(s)	261, 2133, 2793, 2882
BspMAI	CTGCAG	2 cut(s)	277, 2491
BspOI	GCTAGC	1 cut(s)	1307
BspPI	GGATC	8 cut(s)	303, 1737, 2126, 2139, 2785, 2897, 3279, 3311
BspT104I	TTCGAA	1 cut(s)	876
BspTNI	GGTCTC	2 cut(s)	2379, 3055
BsrDI	GCAATG	4 cut(s)	406, 812, 1370, 2947
BsrI	ACTGG	6 cut(s)	626, 2070, 2444, 2596, 3049, 3320
BssECI	CCNNGG	6 cut(s)	326, 384, 793, 1247, 2102, 2438
BssNAI	GTATAC	1 cut(s)	3185
BssSI	CACGAG	1 cut(s)	2922
BssT1I	CCWWGG	3 cut(s)	384, 1247, 2438
Bst1107I	GTATAC	1 cut(s)	3185
Bst2BI	CACGAG	1 cut(s)	2922
Bst4CI	ACNGT	8 cut(s)	94, 579, 751, 797, 888, 1226, 2290, 2645
Bst6I	CTCTTC	4 cut(s)	461, 1561, 2607, 3414
BstAPI	GCANNNNNTGC	1 cut(s)	2059
BstBAI	YACGTR	2 cut(s)	713, 998
BstBI	TTCGAA	1 cut(s)	876
BstC8I	GCNNGC	9 cut(s)	602, 990, 1048, 1176, 1241, 1260, 1305, 1939, 3374
BstDSI	CCRYGG	2 cut(s)	326, 793
BstF5I	GGATG	5 cut(s)	391, 595, 1874, 2074, 2821
BstFNI	CGCG	1 cut(s)	1546
BstH2I	RGCGCY	1 cut(s)	989
BstHHI	GCGC	2 cut(s)	988, 3232
BstMAI	GTCTC	3 cut(s)	1591, 2379, 3055
BstMWI	GCNNNNNNNGC	7 cut(s)	1249, 1337, 1628, 1856, 2059, 2356, 2440
BstNSI	RCATGY	4 cut(s)	1054, 1243, 1631, 2042
BstSFI	CTRYAG	6 cut(s)	273, 1325, 1680, 2487, 2641, 2960
BstSLI	GKGCMC	1 cut(s)	577
BstUI	CGCG	1 cut(s)	1546
BstV2I	GAAGAC	4 cut(s)	528, 1925, 2409, 3146
BstX2I	RGATCY	3 cut(s)	295, 2131, 3271
BstXI	CCANNNNNNTGG	3 cut(s)	418, 541, 1266
BstYI	RGATCY	3 cut(s)	295, 2131, 3271
BstZ17I	GTATAC	1 cut(s)	3185
Bsu15I	ATCGAT	1 cut(s)	1741
Bsu36I	CCTNAGG	1 cut(s)	3362
BsuI	GTATCC	2 cut(s)	391, 950
BsuTUI	ATCGAT	1 cut(s)	1741
BtgI	CCRYGG	2 cut(s)	326, 793
BtrI	CACGTC	2 cut(s)	572, 3457
BtsCI	GGATG	5 cut(s)	391, 595, 1874, 2074, 2821
BtsIMutI	CAGTG	5 cut(s)	613, 1231, 2063, 2650, 2793
Cac8I	GCNNGC	9 cut(s)	602, 990, 1048, 1176, 1241, 1260, 1305, 1939, 3374
CaiI	CAGNNNCTG	3 cut(s)	892, 1103, 3274
CciI	TCATGA	2 cut(s)	1167, 3451
CfoI	GCGC	2 cut(s)	988, 3232
Cfr13I	GGNCC	7 cut(s)	1251, 1590, 2105, 2396, 2547, 2594, 2880
ClaI	ATCGAT	1 cut(s)	1741
CseI	GACGC	1 cut(s)	936
CsiI	ACCWGGT	1 cut(s)	2317
Csp6I	GTAC	6 cut(s)	995, 1391, 1526, 1548, 1641, 2139
CviQI	GTAC	6 cut(s)	995, 1391, 1526, 1548, 1641, 2139
DraI	TTTAAA	2 cut(s)	141, 2451
DraIII	CACNNNGTG	1 cut(s)	713
EaeI	YGGCCR	3 cut(s)	3, 3327, 3370
Eam1104I	CTCTTC	4 cut(s)	461, 1561, 2607, 3414
EarI	CTCTTC	4 cut(s)	461, 1561, 2607, 3414
Ecl136II	GAGCTC	1 cut(s)	2253
Eco130I	CCWWGG	3 cut(s)	384, 1247, 2438
Eco147I	AGGCCT	1 cut(s)	3307
Eco24I	GRGCYC	2 cut(s)	1580, 2255
Eco31I	GGTCTC	2 cut(s)	2379, 3055
Eco47I	GGWCC	2 cut(s)	2594, 2880
Eco53kI	GAGCTC	1 cut(s)	2253
Eco57I	CTGAAG	6 cut(s)	525, 1257, 2421, 2769, 3000, 3171
Eco81I	CCTNAGG	1 cut(s)	3362
EcoICRI	GAGCTC	1 cut(s)	2253
EcoO109I	RGGNCCY	2 cut(s)	2396, 2880
EcoRI	GAATTC	4 cut(s)	37, 188, 305, 872
EcoT14I	CCWWGG	3 cut(s)	384, 1247, 2438
EcoT22I	ATGCAT	1 cut(s)	1498
EcoT38I	GRGCYC	2 cut(s)	1580, 2255
ErhI	CCWWGG	3 cut(s)	384, 1247, 2438
FalI	AAGNNNNNCTT	6 cut(s)	650, 682, 655, 687, 1125, 1157
FaqI	GGGAC	1 cut(s)	788
FauI	CCCGC	1 cut(s)	1852
FauNDI	CATATG	3 cut(s)	265, 1834, 2326
FbaI	TGATCA	2 cut(s)	403, 802
FblI	GTMKAC	1 cut(s)	3184
FokI	GGATG	5 cut(s)	378, 602, 1881, 2081, 2828
FriOI	GRGCYC	2 cut(s)	1580, 2255
GlaI	GCGC	2 cut(s)	987, 3231
GsuI	CTGGAG	2 cut(s)	1320, 3246
HaeII	RGCGCY	1 cut(s)	989
HapII	CCGG	3 cut(s)	762, 825, 2346
HgaI	GACGC	1 cut(s)	936
HhaI	GCGC	2 cut(s)	988, 3232
Hin6I	GCGC	2 cut(s)	986, 3230
HinP1I	GCGC	2 cut(s)	986, 3230
HincII	GTYRAC	1 cut(s)	790
HindII	GTYRAC	1 cut(s)	790
HindIII	AAGCTT	3 cut(s)	664, 973, 1467
HpaII	CCGG	3 cut(s)	762, 825, 2346
HphI	GGTGA	7 cut(s)	277, 809, 1148, 1874, 2699, 2977, 3224
Hpy166II	GTNNAC	5 cut(s)	575, 611, 790, 3185, 3469
Hpy8I	GTNNAC	5 cut(s)	575, 611, 790, 3185, 3469
HpyAV	CCTTC	9 cut(s)	94, 652, 1082, 1139, 1281, 1395, 1859, 2736, 3360
HpyCH4III	ACNGT	8 cut(s)	94, 579, 751, 797, 888, 1226, 2290, 2645
HpyCH4IV	ACGT	4 cut(s)	571, 712, 997, 3456
HpyF10VI	GCNNNNNNNGC	7 cut(s)	1249, 1337, 1628, 1856, 2059, 2356, 2440
HpySE526I	ACGT	4 cut(s)	571, 712, 997, 3456
HspAI	GCGC	2 cut(s)	986, 3230
Kpn2I	TCCGGA	1 cut(s)	824
Ksp22I	TGATCA	2 cut(s)	403, 802
LmnI	GCTCC	9 cut(s)	112, 235, 259, 464, 1708, 2250, 2797, 2852, 3227
LweI	GCATC	9 cut(s)	196, 558, 818, 1276, 1483, 1497, 1505, 2864, 2998
MabI	ACCWGGT	1 cut(s)	2317
MaeII	ACGT	4 cut(s)	571, 712, 997, 3456
MaeIII	GTNAC	5 cut(s)	283, 2149, 2290, 2616, 3379
MfeI	CAATTG	1 cut(s)	1581
MflI	RGATCY	3 cut(s)	295, 2131, 3271
MhlI	GDGCHC	7 cut(s)	117, 577, 1580, 1852, 2255, 2921, 3292
MlsI	TGGCCA	2 cut(s)	5, 3372
MluNI	TGGCCA	2 cut(s)	5, 3372
MlyI	GAGTC	2 cut(s)	854, 2624
MmeI	TCCRAC	1 cut(s)	2261
Mox20I	TGGCCA	2 cut(s)	5, 3372
Mph1103I	ATGCAT	1 cut(s)	1498
MroI	TCCGGA	1 cut(s)	824
MscI	TGGCCA	2 cut(s)	5, 3372
MslI	CAYNNNNRTG	5 cut(s)	696, 798, 1202, 2630, 3441
Msp20I	TGGCCA	2 cut(s)	5, 3372
MspA1I	CMGCKG	3 cut(s)	1103, 1622, 3224
MspI	CCGG	3 cut(s)	762, 825, 2346
MunI	CAATTG	1 cut(s)	1581
Mva1269I	GAATGC	1 cut(s)	2215
MvnI	CGCG	1 cut(s)	1546
MwoI	GCNNNNNNNGC	7 cut(s)	1249, 1337, 1628, 1856, 2059, 2356, 2440
NciI	CCSGG	1 cut(s)	2347
NdeI	CATATG	3 cut(s)	265, 1834, 2326
NheI	GCTAGC	1 cut(s)	1303
NlaIV	GGNNCC	4 cut(s)	261, 2133, 2793, 2882
NmuCI	GTSAC	3 cut(s)	283, 2149, 2616
NsiI	ATGCAT	1 cut(s)	1498
NspI	RCATGY	4 cut(s)	1054, 1243, 1631, 2042
NspV	TTCGAA	1 cut(s)	876
PaeI	GCATGC	1 cut(s)	1243
PagI	TCATGA	2 cut(s)	1167, 3451
PceI	AGGCCT	1 cut(s)	3307
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PctI	GAATGC	1 cut(s)	2215
PfeI	GAWTC	9 cut(s)	225, 530, 704, 928, 1408, 2189, 2367, 2651, 2740
PflMI	CCANNNNNTGG	1 cut(s)	3390
PleI	GAGTC	2 cut(s)	854, 2623
PpsI	GAGTC	2 cut(s)	854, 2623
Ppu21I	YACGTR	2 cut(s)	713, 998
PpuMI	RGGWCCY	1 cut(s)	2880
PshBI	ATTAAT	1 cut(s)	2081
PsiI	TTATAA	4 cut(s)	971, 1040, 1083, 2513
Psp124BI	GAGCTC	1 cut(s)	2255
Psp5II	RGGWCCY	1 cut(s)	2880
PspN4I	GGNNCC	4 cut(s)	261, 2133, 2793, 2882
PspPI	GGNCC	7 cut(s)	1251, 1590, 2105, 2396, 2547, 2594, 2880
PspPPI	RGGWCCY	1 cut(s)	2880
PsrI	GAACNNNNNNTAC	2 cut(s)	1374, 1406
PstI	CTGCAG	2 cut(s)	277, 2491
PstNI	CAGNNNCTG	3 cut(s)	892, 1103, 3274
PsuI	RGATCY	3 cut(s)	295, 2131, 3271
PvuII	CAGCTG	3 cut(s)	1103, 1622, 3224
RsaI	GTAC	6 cut(s)	996, 1392, 1527, 1549, 1642, 2140
RsaNI	GTAC	6 cut(s)	995, 1391, 1526, 1548, 1641, 2139
RseI	CAYNNNNRTG	5 cut(s)	696, 798, 1202, 2630, 3441
SacI	GAGCTC	1 cut(s)	2255
Sau96I	GGNCC	7 cut(s)	1251, 1590, 2105, 2396, 2547, 2594, 2880
SchI	GAGTC	2 cut(s)	854, 2624
SduI	GDGCHC	7 cut(s)	117, 577, 1580, 1852, 2255, 2921, 3292
SexAI	ACCWGGT	1 cut(s)	2317
SfaNI	GCATC	9 cut(s)	196, 558, 818, 1276, 1483, 1497, 1505, 2864, 2998
SfcI	CTRYAG	6 cut(s)	273, 1325, 1680, 2487, 2641, 2960
SfuI	TTCGAA	1 cut(s)	876
SinI	GGWCC	2 cut(s)	2594, 2880
SmiMI	CAYNNNNRTG	5 cut(s)	696, 798, 1202, 2630, 3441
SphI	GCATGC	1 cut(s)	1243
SseBI	AGGCCT	1 cut(s)	3307
SsiI	CCGC	3 cut(s)	1126, 1859, 2306
SspI	AATATT	3 cut(s)	1703, 3117, 3193
SstI	GAGCTC	1 cut(s)	2255
StuI	AGGCCT	1 cut(s)	3307
StyI	CCWWGG	3 cut(s)	384, 1247, 2438
TaaI	ACNGT	8 cut(s)	94, 579, 751, 797, 888, 1226, 2290, 2645
TaiI	ACGT	4 cut(s)	574, 715, 1000, 3459
TaqI	TCGA	4 cut(s)	45, 489, 876, 1741
TatI	WGTACW	3 cut(s)	1390, 1525, 1640
TfiI	GAWTC	9 cut(s)	225, 530, 704, 928, 1408, 2189, 2367, 2651, 2740
TscAI	CASTG	5 cut(s)	613, 1231, 2070, 2650, 2793
TseFI	GTSAC	3 cut(s)	283, 2149, 2616
Tsp45I	GTSAC	3 cut(s)	283, 2149, 2616
TspGWI	ACGGA	3 cut(s)	170, 784, 1045
TspRI	CASTG	5 cut(s)	613, 1231, 2070, 2650, 2793
Van91I	CCANNNNNTGG	1 cut(s)	3390
VneI	GTGCAC	1 cut(s)	573
VpaK11BI	GGWCC	2 cut(s)	2594, 2880
VspI	ATTAAT	1 cut(s)	2081
XbaI	TCTAGA	2 cut(s)	2296, 3104
XceI	RCATGY	4 cut(s)	1054, 1243, 1631, 2042
XmaJI	CCTAGG	1 cut(s)	2438
XmiI	GTMKAC	1 cut(s)	3184
Zsp2I	ATGCAT	1 cut(s)	1498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.