Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0004789

Physical Location & Seq

Genomic Coordinates Forward (+)

29183495 .. 29199030

Gene Structure 15536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG241800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3663 bp

ATGAGGACTTTTTCAGTTGAAGATGTTAGTGATTTGTGGCCTACTGTCAAGAAGGGATTTGAGGAGCACTTGCCTTTCAAAAGAGCTTGTTTAAATAACAAGACCCGTAATCCTGTGTTTGTGGAGAATTTCCGTGCTGAATTCATATTAACAACAGATGCAAGACTTCGCAGCCGATTCCCACAGGAGCAGTCATTGTTTTGGTTTCGGGAGCCATATGCAACTGCGGTCCTCGTCACCTGTGAGGATCTTGATGAATTCAAGACCATTCTCAAACCACGGCTAAAACTAATTGTCCAAAATGATGAACGGGAATGGTTTATTGTTTTTGTATCCAAGGCACATCCAAGCAATGATCAAGCCACCAAATTGGCAAATAAAGTATATGCCAAACTTGAAGTTGATTTTAGCTCCAAGAAGAGAGAAAGGTGCTGCAAATTCGACCTATATAGTGCTGAAGAAACCTTTTGGGAAGACTTGGAATCCAAGATAATGGAGTGCATCAGAAATACATTGGATAGACGTGCACAGTTTTATGAGGATGAGATACGCAAGCTCAGTGAACAACGCTTCATGCCAGTTTGGAATTTCTGCAACTTTTTTATTTTGAAGGAAAGCTTGGCTTTTATGTTTGAGATGGCTCATCTTTATGAAGATTCACTACGTGAATATGATGAGCTAGAAATTTGTTATTTGGAAACAGTTGAAATGACCGGAAAACGGAGGGACTTTGGTGGAGTTGACCACGGTGATGATCAAGCATCATTGCTTAATTCCGGAAACAAACCATTGACACAAATTGTTCAAGATGACTCATTTAGGGAATTCGAATTTAGACAGTATCTGTTTGCCTGTCAATCAAAGCTATTATTCAAGCTGAATCGCCCCTATGAGGTTGCGTCAAGGGGATACTCATTCATTATAAGCTTTTCAAAGGCGCTGGCTGTACGTGAGAATAGCCTACCTTTTTGTATGCGTGAAGTTTGGGTTATAACAGCTTGCATGTCCGTAGTCCATGCAACTGCTTCACATTATAAGGAAGGACTTGCAGCAGCTGATATAGAAAAGGAGTTCTACCGCCTTCAAGGTGATCTTTACTCACTATGCAGGGTCAAGTTCATGAGGCTTGCGTATTTAATTGGATATGGCACAAATATGGAAAGAAGTCCTGGCAACAGTGCTTCACTCAGCATGCTACCTTGGCCCAAGCCAGCAATTTGGCCTTCAGTTCCACCTGATGCTTCTTCTGAGGTGCTAGCAAAAGAAAAGATAATTCTACAGGCAACTCCAGCTACCAAGCACTTTGGTATTCAAAGAAAACCATTGCCTCTTGAACCTTCTGTACTACTGCGTGAGGCGAATCGGAGGAGAGCTTCTCTCTCTGCTGGAAATATGTTTGAAATGCTTGATGGTCGCCAAGCTTTGACTGATGGTTCAGGTTCAGATGCATCAATTAAGATGCCCTCATTACAAAAAGTACAAGCAAGTGTTATGTCGCGTACAAACTCTTCGCCAGGAATGTTTGAGGGCTCAATTGATCGGCCCATGAGACTTGCAGAGATTTATGTTGCAGCTGAACATGCTCTGCAAAGTACAATTTCTAATACTGATCTATGGAAGTCTTTGTCATCTACAGAGGAGTTTGAGCAAAAATATTTGGAGCTAACTAAGGGTGCTGCTGACAATTACCATCGATCCTGGTGGAAAAGGCATGGAGTTGTCCTTGATGGAGAAATTGCAGCAGTCTTGTTTAAGCATGGAAACTTTGATCTAGCTGCAAAGTCATATGAAAAGGTCTGTGCTCTTTATGCGGGTGAAGGATGGCAAGATTTGTTGGCGGAAGTCCTGCCCAACTTAGCAGAGTGTCAGAAGACACTCAATGACCAAGCTGGCTATCTATCTTCTTGCGTGAGGCTTCTTTCATTGGATAAAGGCTTGTTTTTAACCAAAGAACGCCAGGCTTTTCAGTCTGAGGTTGTTCATCTTGCACATGCTGAAATGAAGCAACCTGTGCCACTGGATGTATCATCATTAATTACATTCTCTGGTAATCCTGGGCCTCCATTAGAATTATGTGATGGGGATCCTGGTACTCTATCTGTGACATTTTGGAGTGGCTTTCCTGATGACATAACTCTTGATTCCCTAAATCTCACATTGAATGCAATTTTCAATACTGATGAGGTTGCTAAGGCACTATGGAGCTCTACTGCTATTGTATTAAAGCCTGGTCGGAATACCGTTACTCTAGATTTACCGCCCCAAAAACCAGGTTCATATGTTTTGGGGGTTCTTACCGGGCAGATTGGGCAGTTAAGATTCAGGTCTCATAGCTTTTCCAAAGGAGGCCCTGAAGACAGCGAGGATTTTATGAGTTATGAAAAGCCTCCTAGGCCAGTTTTAAAGGTTTCCAAAGTGCGACCTCTTGTTGATCTTGCTGCAGCTATTTCATCTGCCCTGCTTATAAATGAAACTCAATGGGTTGGGATTATAGTAAGGCCCATTAACTACTCCCTCAAAGGTGCTGCCTTGTATGTTGATACTGGTCCTGGCCTTAAAATTGAAGAGTCACATTTCATTGAGATGGAGAGCTACAGTGATGAATCAAATAGTTCGGTTGAGCAGTTGGCTCTTTCTGGTGATAGAGTAGAGTTTCCAGATTGGGCAAGTAATTTGCCTTCTATTGTATGGATTCCAATTCGTGCTATCAGCGAAACACTTGCAAGAGGATCATCTTCAGTGGCTCCCCAAAGACAGATCAATTTGGATGGAATGAGGACAATAGCACTAAAACTTGAATTTGGAGCATCTCACAATCAGATTTTTGAGAGGACCCTAGCTGTGCATTTTACTGATCCTTTCCATGTGAGCACACGAGTTGCAGATAAATGCAATGATGGAACTTTGCTTCTACAGGTGATTTTACACTCTGAAGTGAAAGCCACATTGACGATTTATGATGCTTGGCTTGATCTTCAAGATGGATTTGTTAATACTGGACAAAGTGATGGGAGACCAACTTCTGCCTACTTTCCACTCGTTGTTTCTCCAAATTCTAGAGCAGGAATATTATTCAGTATATGCTTAGGGAAGACAAATTCTGAAGATGAAGCTAAGGTTGTTCAATCAGATAGTATACTAAATATTAGATATGGAATTTCTGGTGATAGAACAGCTGGAGCGCACCCACCTGTGGCTTTTGGGTCTGAGGGTGCTGGACAGGATCTGATTTTCAGGAGTGCTCTTGTTTTGCAAAGGCCTGTGCTTGATCCAGTCCTGGCCGTTGGTTTTCTTCCTCTCCCTTCTAGTGGCCTTAGGGTTGGCCAGCTAGTTACCATGAAATGGAGGGTTGAAAGATTAAAGGATTTTGAAGAGAATGAACTTTCCCATAACAATGATGAGGTGTTATATGAAGTCAATGCAAACACTGAAAGTTGGATGGTTGCTGGGAGGAAAAGAGGGCATGTCTCTCTCTCTGCAAAGCAAGGTTCAAGGATAGAGATTTCAATACTATGTGTGCCTCTGGTGGCGGGATACGTTCGCCCCCCTCAACTTGGTTTGCCAAATGTTGATGAATCAAATATAAGTTGCAATCCTGCAGGGCCTCATTTGGTTTGTGTCTTGCCTCCAACTTTGAGTTCGTCTTTCTGCATTCCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006891 GO:0007049 GO:0008150 GO:0009987 GO:0012505 GO:0016043 GO:0016192 GO:0016197 GO:0016482 GO:0022402 GO:0022607 GO:0030008 GO:0031410 GO:0031982 GO:0031984 GO:0032506 GO:0032991 GO:0034498 GO:0042147 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051301 GO:0051641 GO:0051649 GO:0061640 GO:0071840 GO:0097708 GO:0098791 GO:0099023 GO:1902410 GO:1903047 GO:1990071

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Foie-gras_1 TRAPPC10

Protein Analysis

1220

Amino Acids

136.52

Weight (kDa)

5.66

Isoelectric Point (pI)

44.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAPPC10_1st	PF23036	6 - 300	1.8e-50	Trafficking protein particle complex subunit 10-like, N-terminal
TRAPPC10	PF12584	1104 - 1185	7e-11	Trafficking protein particle complex subunit 10, TRAPPC10

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54440 AT5G54440 AT5G54440
fragaria_vesca	FvH4_3g20750 FvH4_3g20750 FvH4_3g20750 FvH4_3g20750
malus_domestica	MD03G1222200.v1.1 MD11G1239600.v1.1
prunus_persica	Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1
pyrus_communis	pycom03g17080 pycom11g21130
rosa_chinensis	RchiOBHm_Chr5g0034971
rosa_laevigata	RLG00000033586 RLG00000033589
rosa_multiflora	Rmu_co8343959.1_g000001 Rmu_sc0000879.1_g000039 Rmu_sc0021290.1_g000001
rosa_roxburghii	Rroxscaffold_1G00045410
rosa_rugosa	Rorug05G0149100 Rorug05G0149200 Rorug05G0149300
rosa_samantha	Rh5AG242200 Rh5BG241800 Rh5CG273300 Rh5DG250400
rosa_wichuraiana	Rw5G022120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	923, 992, 1035, 2465
AccB7I	CCANNNNNTGG	1 cut(s)	3342
AccI	GTMKAC	1 cut(s)	3136
AccII	CGCG	1 cut(s)	1498
AccIII	TCCGGA	1 cut(s)	776
AciI	CCGC	6 cut(s)	227, 1078, 1811, 1838, 2258, 3530
AclWI	GGATC	8 cut(s)	255, 1689, 2078, 2091, 2737, 2849, 3231, 3263
AcoI	YGGCCR	2 cut(s)	3279, 3322
AcuI	CTGAAG	6 cut(s)	477, 1209, 2373, 2721, 2952, 3123
AdeI	CACNNNGTG	1 cut(s)	665
AfaI	GTAC	6 cut(s)	948, 1344, 1479, 1501, 1594, 2092
AfiI	CCNNNNNNNGG	6 cut(s)	720, 892, 3193, 3308, 3342, 3554
AjiI	CACGTC	1 cut(s)	524
AjuI	GAANNNNNNNTTGG	4 cut(s)	602, 634, 3622, 3654
Alw21I	GWGCWC	6 cut(s)	69, 529, 1804, 2207, 2873, 3244
Alw26I	GTCTC	4 cut(s)	1543, 2331, 3007, 3472
Alw44I	GTGCAC	1 cut(s)	525
AlwI	GGATC	8 cut(s)	255, 1689, 2078, 2091, 2737, 2849, 3231, 3263
AlwNI	CAGNNNCTG	3 cut(s)	844, 1055, 3226
Aor13HI	TCCGGA	1 cut(s)	776
ApaLI	GTGCAC	1 cut(s)	525
AseI	ATTAAT	1 cut(s)	2033
AspA2I	CCTAGG	1 cut(s)	2390
AspLEI	GCGC	2 cut(s)	940, 3184
AspS9I	GGNCC	9 cut(s)	229, 1203, 1542, 2057, 2348, 2499, 2546, 2832, 3602
AsuC2I	CCSGG	1 cut(s)	2299
AsuHPI	GGTGA	7 cut(s)	229, 761, 1100, 1826, 2651, 2929, 3176
AsuII	TTCGAA	1 cut(s)	828
AsuNHI	GCTAGC	1 cut(s)	1255
AvaII	GGWCC	3 cut(s)	229, 2546, 2832
AvrII	CCTAGG	1 cut(s)	2390
AxyI	CCTNAGG	1 cut(s)	3314
BaeGI	GKGCMC	1 cut(s)	529
BalI	TGGCCA	1 cut(s)	3324
BamHI	GGATCC	1 cut(s)	2083
BanII	GRGCYC	2 cut(s)	1532, 2207
BarI	GAAGNNNNNNTAC	6 cut(s)	645, 677, 1492, 1524, 2662, 2694
BauI	CACGAG	1 cut(s)	2874
BbsI	GAAGAC	4 cut(s)	480, 1877, 2361, 3098
Bbv12I	GWGCWC	6 cut(s)	69, 529, 1804, 2207, 2873, 3244
BceAI	ACGGC	2 cut(s)	296, 3266
BcgI	CGANNNNNNTGC	2 cut(s)	2702, 2736
BciVI	GTATCC	3 cut(s)	343, 902, 3527
BclI	TGATCA	2 cut(s)	355, 754
BcnI	CCSGG	1 cut(s)	2299
BcoDI	GTCTC	4 cut(s)	1543, 2331, 3007, 3472
BfaI	CTAG	9 cut(s)	680, 1256, 1772, 2249, 2391, 2837, 3057, 3306, 3329
BfmI	CTRYAG	6 cut(s)	1277, 1632, 2439, 2593, 2912, 3597
BfoI	RGCGCY	1 cut(s)	941
BfuI	GTATCC	3 cut(s)	343, 902, 3527
BglI	GCCNNNNNGGC	1 cut(s)	2392
BlnI	CCTAGG	1 cut(s)	2390
Bme18I	GGWCC	3 cut(s)	229, 2546, 2832
BmgBI	CACGTC	1 cut(s)	524
BmgT120I	GGNCC	9 cut(s)	229, 1203, 1542, 2057, 2348, 2499, 2546, 2832, 3602
BmiI	GGNNCC	4 cut(s)	213, 2085, 2745, 2834
BmsI	GCATC	9 cut(s)	148, 510, 770, 1228, 1435, 1449, 1457, 2816, 2950
BmtI	GCTAGC	1 cut(s)	1259
BpiI	GAAGAC	4 cut(s)	480, 1877, 2361, 3098
BplI	GAGNNNNNCTC	4 cut(s)	1360, 1392, 1362, 1394
BpmI	CTGGAG	2 cut(s)	1272, 3198
Bpu10I	CCTNAGC	3 cut(s)	2190, 3085, 3114
Bpu14I	TTCGAA	1 cut(s)	828
BpuMI	CCSGG	1 cut(s)	2299
Bsa29I	ATCGAT	1 cut(s)	1693
BsaAI	YACGTR	2 cut(s)	665, 950
BsaBI	GATNNNNATC	1 cut(s)	2082
BsaI	GGTCTC	2 cut(s)	2331, 3007
BsaJI	CCNNGG	6 cut(s)	278, 336, 745, 1199, 2054, 2390
BsaWI	WCCGGW	2 cut(s)	713, 776
Bsc4I	CCNNNNNNNGG	6 cut(s)	720, 892, 3193, 3308, 3342, 3554
Bse1I	ACTGG	6 cut(s)	578, 2022, 2396, 2548, 3001, 3272
Bse21I	CCTNAGG	1 cut(s)	3314
Bse3DI	GCAATG	4 cut(s)	358, 764, 1322, 2899
Bse8I	GATNNNNATC	1 cut(s)	2082
BseAI	TCCGGA	1 cut(s)	776
BseCI	ATCGAT	1 cut(s)	1693
BseDI	CCNNGG	6 cut(s)	278, 336, 745, 1199, 2054, 2390
BseGI	GGATG	6 cut(s)	343, 547, 1826, 2026, 2773, 3444
BseJI	GATNNNNATC	1 cut(s)	2082
BseLI	CCNNNNNNNGG	6 cut(s)	720, 892, 3193, 3308, 3342, 3554
BseMI	GCAATG	4 cut(s)	358, 764, 1322, 2899
BseMII	CTCAG	5 cut(s)	571, 1201, 1239, 1962, 3198
BseNI	ACTGG	6 cut(s)	578, 2022, 2396, 2548, 3001, 3272
BseRI	GAGGAG	3 cut(s)	77, 1381, 1652
BseSI	GKGCMC	1 cut(s)	529
BseYI	CCCAGC	1 cut(s)	3446
Bsh1236I	CGCG	1 cut(s)	1498
BshVI	ATCGAT	1 cut(s)	1693
BsiHKAI	GWGCWC	6 cut(s)	69, 529, 1804, 2207, 2873, 3244
BsiSI	CCGG	3 cut(s)	714, 777, 2298
BslFI	GGGAC	1 cut(s)	740
BslI	CCNNNNNNNGG	6 cut(s)	720, 892, 3193, 3308, 3342, 3554
BsmAI	GTCTC	4 cut(s)	1543, 2331, 3007, 3472
BsmFI	GGGAC	1 cut(s)	740
BsmI	GAATGC	2 cut(s)	2167, 3651
Bso31I	GGTCTC	2 cut(s)	2331, 3007
Bsp119I	TTCGAA	1 cut(s)	828
Bsp1286I	GDGCHC	7 cut(s)	69, 529, 1532, 1804, 2207, 2873, 3244
Bsp13I	TCCGGA	1 cut(s)	776
BspACI	CCGC	6 cut(s)	227, 1078, 1811, 1838, 2258, 3530
BspCNI	CTCAG	5 cut(s)	570, 1200, 1240, 1963, 3199
BspDI	ATCGAT	1 cut(s)	1693
BspEI	TCCGGA	1 cut(s)	776
BspFNI	CGCG	1 cut(s)	1498
BspHI	TCATGA	1 cut(s)	1119
BspLI	GGNNCC	4 cut(s)	213, 2085, 2745, 2834
BspMAI	CTGCAG	2 cut(s)	2443, 3601
BspOI	GCTAGC	1 cut(s)	1259
BspPI	GGATC	8 cut(s)	255, 1689, 2078, 2091, 2737, 2849, 3231, 3263
BspT104I	TTCGAA	1 cut(s)	828
BspTNI	GGTCTC	2 cut(s)	2331, 3007
BsrDI	GCAATG	4 cut(s)	358, 764, 1322, 2899
BsrI	ACTGG	6 cut(s)	578, 2022, 2396, 2548, 3001, 3272
BssECI	CCNNGG	6 cut(s)	278, 336, 745, 1199, 2054, 2390
BssNAI	GTATAC	1 cut(s)	3137
BssSI	CACGAG	1 cut(s)	2874
BssT1I	CCWWGG	3 cut(s)	336, 1199, 2390
Bst1107I	GTATAC	1 cut(s)	3137
Bst2BI	CACGAG	1 cut(s)	2874
Bst4CI	ACNGT	8 cut(s)	46, 531, 703, 749, 840, 1178, 2242, 2597
Bst6I	CTCTTC	4 cut(s)	413, 1513, 2559, 3366
BstAPI	GCANNNNNTGC	1 cut(s)	2011
BstBAI	YACGTR	2 cut(s)	665, 950
BstBI	TTCGAA	1 cut(s)	828
BstC8I	GCNNGC	9 cut(s)	554, 942, 1000, 1128, 1193, 1212, 1257, 1891, 3326
BstDSI	CCRYGG	2 cut(s)	278, 745
BstF5I	GGATG	6 cut(s)	343, 547, 1826, 2026, 2773, 3444
BstFNI	CGCG	1 cut(s)	1498
BstH2I	RGCGCY	1 cut(s)	941
BstHHI	GCGC	2 cut(s)	940, 3184
BstMAI	GTCTC	4 cut(s)	1543, 2331, 3007, 3472
BstMWI	GCNNNNNNNGC	7 cut(s)	1201, 1289, 1580, 1808, 2011, 2308, 2392
BstNSI	RCATGY	5 cut(s)	1006, 1195, 1583, 1994, 3467
BstSFI	CTRYAG	6 cut(s)	1277, 1632, 2439, 2593, 2912, 3597
BstSLI	GKGCMC	1 cut(s)	529
BstUI	CGCG	1 cut(s)	1498
BstV2I	GAAGAC	4 cut(s)	480, 1877, 2361, 3098
BstX2I	RGATCY	3 cut(s)	247, 2083, 3223
BstXI	CCANNNNNNTGG	3 cut(s)	370, 493, 1218
BstYI	RGATCY	3 cut(s)	247, 2083, 3223
BstZ17I	GTATAC	1 cut(s)	3137
Bsu15I	ATCGAT	1 cut(s)	1693
Bsu36I	CCTNAGG	1 cut(s)	3314
BsuI	GTATCC	3 cut(s)	343, 902, 3527
BsuTUI	ATCGAT	1 cut(s)	1693
BtgI	CCRYGG	2 cut(s)	278, 745
BtrI	CACGTC	1 cut(s)	524
BtsCI	GGATG	6 cut(s)	343, 547, 1826, 2026, 2773, 3444
BtsIMutI	CAGTG	6 cut(s)	565, 1183, 2015, 2602, 2745, 3426
Cac8I	GCNNGC	9 cut(s)	554, 942, 1000, 1128, 1193, 1212, 1257, 1891, 3326
CaiI	CAGNNNCTG	3 cut(s)	844, 1055, 3226
CciI	TCATGA	1 cut(s)	1119
CfoI	GCGC	2 cut(s)	940, 3184
Cfr13I	GGNCC	9 cut(s)	229, 1203, 1542, 2057, 2348, 2499, 2546, 2832, 3602
ClaI	ATCGAT	1 cut(s)	1693
CseI	GACGC	1 cut(s)	888
CsiI	ACCWGGT	1 cut(s)	2269
Csp6I	GTAC	6 cut(s)	947, 1343, 1478, 1500, 1593, 2091
CviQI	GTAC	6 cut(s)	947, 1343, 1478, 1500, 1593, 2091
DraI	TTTAAA	2 cut(s)	93, 2403
DraIII	CACNNNGTG	1 cut(s)	665
EaeI	YGGCCR	2 cut(s)	3279, 3322
Eam1104I	CTCTTC	4 cut(s)	413, 1513, 2559, 3366
EarI	CTCTTC	4 cut(s)	413, 1513, 2559, 3366
EciI	GGCGGA	1 cut(s)	1853
Ecl136II	GAGCTC	1 cut(s)	2205
Eco130I	CCWWGG	3 cut(s)	336, 1199, 2390
Eco147I	AGGCCT	1 cut(s)	3259
Eco24I	GRGCYC	2 cut(s)	1532, 2207
Eco31I	GGTCTC	2 cut(s)	2331, 3007
Eco47I	GGWCC	3 cut(s)	229, 2546, 2832
Eco53kI	GAGCTC	1 cut(s)	2205
Eco57I	CTGAAG	6 cut(s)	477, 1209, 2373, 2721, 2952, 3123
Eco81I	CCTNAGG	1 cut(s)	3314
EcoICRI	GAGCTC	1 cut(s)	2205
EcoO109I	RGGNCCY	3 cut(s)	2348, 2832, 3602
EcoRI	GAATTC	3 cut(s)	140, 257, 824
EcoT14I	CCWWGG	3 cut(s)	336, 1199, 2390
EcoT22I	ATGCAT	1 cut(s)	1450
EcoT38I	GRGCYC	2 cut(s)	1532, 2207
ErhI	CCWWGG	3 cut(s)	336, 1199, 2390
FalI	AAGNNNNNCTT	6 cut(s)	602, 634, 607, 639, 1077, 1109
FaqI	GGGAC	1 cut(s)	740
FauI	CCCGC	2 cut(s)	1804, 3523
FauNDI	CATATG	3 cut(s)	217, 1786, 2278
FbaI	TGATCA	2 cut(s)	355, 754
FblI	GTMKAC	1 cut(s)	3136
FokI	GGATG	6 cut(s)	330, 554, 1833, 2033, 2780, 3451
FriOI	GRGCYC	2 cut(s)	1532, 2207
FspBI	CTAG	9 cut(s)	680, 1256, 1772, 2249, 2391, 2837, 3057, 3306, 3329
GlaI	GCGC	2 cut(s)	939, 3183
GsaI	CCCAGC	1 cut(s)	3450
GsuI	CTGGAG	2 cut(s)	1272, 3198
HaeII	RGCGCY	1 cut(s)	941
HapII	CCGG	3 cut(s)	714, 777, 2298
HgaI	GACGC	1 cut(s)	888
HhaI	GCGC	2 cut(s)	940, 3184
Hin6I	GCGC	2 cut(s)	938, 3182
HinP1I	GCGC	2 cut(s)	938, 3182
HincII	GTYRAC	1 cut(s)	742
HindII	GTYRAC	1 cut(s)	742
HindIII	AAGCTT	3 cut(s)	616, 925, 1419
HpaII	CCGG	3 cut(s)	714, 777, 2298
HphI	GGTGA	7 cut(s)	229, 761, 1100, 1826, 2651, 2929, 3176
Hpy166II	GTNNAC	4 cut(s)	527, 563, 742, 3137
Hpy8I	GTNNAC	4 cut(s)	527, 563, 742, 3137
HpyAV	CCTTC	9 cut(s)	46, 604, 1034, 1091, 1233, 1347, 1811, 2688, 3312
HpyCH4III	ACNGT	8 cut(s)	46, 531, 703, 749, 840, 1178, 2242, 2597
HpyCH4IV	ACGT	4 cut(s)	523, 664, 949, 3537
HpyF10VI	GCNNNNNNNGC	7 cut(s)	1201, 1289, 1580, 1808, 2011, 2308, 2392
HpySE526I	ACGT	4 cut(s)	523, 664, 949, 3537
HspAI	GCGC	2 cut(s)	938, 3182
Kpn2I	TCCGGA	1 cut(s)	776
Ksp22I	TGATCA	2 cut(s)	355, 754
LmnI	GCTCC	9 cut(s)	64, 187, 211, 416, 1660, 2202, 2749, 2804, 3179
LweI	GCATC	9 cut(s)	148, 510, 770, 1228, 1435, 1449, 1457, 2816, 2950
MabI	ACCWGGT	1 cut(s)	2269
MaeI	CTAG	9 cut(s)	680, 1256, 1772, 2249, 2391, 2837, 3057, 3306, 3329
MaeII	ACGT	4 cut(s)	523, 664, 949, 3537
MaeIII	GTNAC	5 cut(s)	235, 2101, 2242, 2568, 3331
MfeI	CAATTG	1 cut(s)	1533
MflI	RGATCY	3 cut(s)	247, 2083, 3223
MhlI	GDGCHC	7 cut(s)	69, 529, 1532, 1804, 2207, 2873, 3244
MlsI	TGGCCA	1 cut(s)	3324
MluNI	TGGCCA	1 cut(s)	3324
MlyI	GAGTC	2 cut(s)	806, 2576
MmeI	TCCRAC	3 cut(s)	2213, 3416, 3653
Mox20I	TGGCCA	1 cut(s)	3324
Mph1103I	ATGCAT	1 cut(s)	1450
MroI	TCCGGA	1 cut(s)	776
MscI	TGGCCA	1 cut(s)	3324
MslI	CAYNNNNRTG	5 cut(s)	648, 750, 1154, 2582, 3393
Msp20I	TGGCCA	1 cut(s)	3324
MspA1I	CMGCKG	3 cut(s)	1055, 1574, 3176
MspI	CCGG	3 cut(s)	714, 777, 2298
MunI	CAATTG	1 cut(s)	1533
Mva1269I	GAATGC	2 cut(s)	2167, 3651
MvnI	CGCG	1 cut(s)	1498
MwoI	GCNNNNNNNGC	7 cut(s)	1201, 1289, 1580, 1808, 2011, 2308, 2392
NciI	CCSGG	1 cut(s)	2299
NdeI	CATATG	3 cut(s)	217, 1786, 2278
NheI	GCTAGC	1 cut(s)	1255
NlaIV	GGNNCC	4 cut(s)	213, 2085, 2745, 2834
NmuCI	GTSAC	3 cut(s)	235, 2101, 2568
NsiI	ATGCAT	1 cut(s)	1450
NspI	RCATGY	5 cut(s)	1006, 1195, 1583, 1994, 3467
NspV	TTCGAA	1 cut(s)	828
PaeI	GCATGC	1 cut(s)	1195
PagI	TCATGA	1 cut(s)	1119
PceI	AGGCCT	1 cut(s)	3259
PctI	GAATGC	2 cut(s)	2167, 3651
PflMI	CCANNNNNTGG	1 cut(s)	3342
PleI	GAGTC	2 cut(s)	806, 2575
PpsI	GAGTC	2 cut(s)	806, 2575
Ppu21I	YACGTR	2 cut(s)	665, 950
PpuMI	RGGWCCY	1 cut(s)	2832
PshBI	ATTAAT	1 cut(s)	2033
PsiI	TTATAA	4 cut(s)	923, 992, 1035, 2465
Psp124BI	GAGCTC	1 cut(s)	2207
Psp5II	RGGWCCY	1 cut(s)	2832
PspFI	CCCAGC	1 cut(s)	3446
PspN4I	GGNNCC	4 cut(s)	213, 2085, 2745, 2834
PspPI	GGNCC	9 cut(s)	229, 1203, 1542, 2057, 2348, 2499, 2546, 2832, 3602
PspPPI	RGGWCCY	1 cut(s)	2832
PsrI	GAACNNNNNNTAC	2 cut(s)	1326, 1358
PstI	CTGCAG	2 cut(s)	2443, 3601
PstNI	CAGNNNCTG	3 cut(s)	844, 1055, 3226
PsuI	RGATCY	3 cut(s)	247, 2083, 3223
PvuII	CAGCTG	3 cut(s)	1055, 1574, 3176
RsaI	GTAC	6 cut(s)	948, 1344, 1479, 1501, 1594, 2092
RsaNI	GTAC	6 cut(s)	947, 1343, 1478, 1500, 1593, 2091
RseI	CAYNNNNRTG	5 cut(s)	648, 750, 1154, 2582, 3393
SacI	GAGCTC	1 cut(s)	2207
Sau96I	GGNCC	9 cut(s)	229, 1203, 1542, 2057, 2348, 2499, 2546, 2832, 3602
SbfI	CCTGCAGG	1 cut(s)	3601
SchI	GAGTC	2 cut(s)	806, 2576
SdaI	CCTGCAGG	1 cut(s)	3601
SduI	GDGCHC	7 cut(s)	69, 529, 1532, 1804, 2207, 2873, 3244
SexAI	ACCWGGT	1 cut(s)	2269
SfaNI	GCATC	9 cut(s)	148, 510, 770, 1228, 1435, 1449, 1457, 2816, 2950
SfcI	CTRYAG	6 cut(s)	1277, 1632, 2439, 2593, 2912, 3597
SfuI	TTCGAA	1 cut(s)	828
SinI	GGWCC	3 cut(s)	229, 2546, 2832
SmiMI	CAYNNNNRTG	5 cut(s)	648, 750, 1154, 2582, 3393
SphI	GCATGC	1 cut(s)	1195
Sse8387I	CCTGCAGG	1 cut(s)	3601
SseBI	AGGCCT	1 cut(s)	3259
SsiI	CCGC	6 cut(s)	227, 1078, 1811, 1838, 2258, 3530
SspI	AATATT	3 cut(s)	1655, 3069, 3145
SspMI	CTAG	9 cut(s)	680, 1256, 1772, 2249, 2391, 2837, 3057, 3306, 3329
SstI	GAGCTC	1 cut(s)	2207
StuI	AGGCCT	1 cut(s)	3259
StyI	CCWWGG	3 cut(s)	336, 1199, 2390
TaaI	ACNGT	8 cut(s)	46, 531, 703, 749, 840, 1178, 2242, 2597
TaiI	ACGT	4 cut(s)	526, 667, 952, 3540
TaqI	TCGA	3 cut(s)	441, 828, 1693
TatI	WGTACW	3 cut(s)	1342, 1477, 1592
TscAI	CASTG	6 cut(s)	565, 1183, 2022, 2602, 2745, 3433
TseFI	GTSAC	3 cut(s)	235, 2101, 2568
Tsp45I	GTSAC	3 cut(s)	235, 2101, 2568
TspGWI	ACGGA	3 cut(s)	122, 736, 997
TspRI	CASTG	6 cut(s)	565, 1183, 2022, 2602, 2745, 3433
Van91I	CCANNNNNTGG	1 cut(s)	3342
VneI	GTGCAC	1 cut(s)	525
VpaK11BI	GGWCC	3 cut(s)	229, 2546, 2832
VspI	ATTAAT	1 cut(s)	2033
XbaI	TCTAGA	2 cut(s)	2248, 3056
XceI	RCATGY	5 cut(s)	1006, 1195, 1583, 1994, 3467
XmaJI	CCTAGG	1 cut(s)	2390
XmiI	GTMKAC	1 cut(s)	3136
XspI	CTAG	9 cut(s)	680, 1256, 1772, 2249, 2391, 2837, 3057, 3306, 3329
Zsp2I	ATGCAT	1 cut(s)	1450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.