Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0004789

Physical Location & Seq

Genomic Coordinates Reverse (-)

30638849 .. 30651378

Gene Structure 12530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1222200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3780 bp

ATGGCGAATTATCTTGCTCAGTTCCAGACGATCAAGAATTCCCTCGATCATCTCGTGATTGCAGTTGAAGATGTGAGCGACTTGTGGCCTACTGTCAAGAATGGGTTTGAGGAGCACTTGCCATTTAAAAGAGCTTGCTTAAATAACAAGACACGTAATCCCGTATTTGTAGAGAATCTTCCTGCTGAATTCATACTAACCACAGACTCGAGGCTTCGTAGCCGGTTCCCACAAGAGCAATCATTATTTTGGTTCCGGGAGCCATATGCAACTGCGGTCCTCGTCACCTGTGAGGATCTTGATGAGTTCAAGACCATCCTTAAACCGCGCCTAAAGTTAATTGTCCAGAATGATGAACGGGAATGGTTTATTGTTTTTATATCCAAGGCTCACCCGAATAATGATCAAGCCACCAAATTGGCAAGTAAAGTTTATGCCAAACTTGAAGTTGATTTCAGTTCCAAGAAGAGAGAAAGGTGCTGCAAGTTCGATCTATATTCACCTGAAGCAAACTTTTGGGAAGACTTGGAATCCAAGATAATGGAGTGCATCAGAAATACATTAGATAGGCGTGTACAATTTTATGAGGACGAGATACGCAAGCTTAGTGAACAACGCTTCATGCCAGTTTGGAACTTCTGCAATTTTTTTATTCTGAAGGAAAGCTTGGCTTTTATGTTTGAGATGGCTCATCTTCATGAAGATTCTTTACGTGAATATGATGAACTAGAAATTTGTTATTTGGAAACAGTTGAAATGAATGGAACACGGAAGGACTTCGGAGGAGTTGACCATGGTGATGATCAGGCAGCATTGCTCAATTCTGGAAACAAATCATTGACACAAATTGTTCAAGATGACTCATTTAGAGAATTTGAATTTAGACAGTATCTGTTTGCCTGCCAATCAAAGCTTTTATTCAAGCTGAATCGCCCGTTTGAAGTAGCATCAAGGGGATACTCATTCATTATAAGCTTCTCAAAGTCTCTGGCTGTACATGAGAGTATTCTACCTTTTTGTATGCGTGAAGTTTGGGTGATAACGGCGTGCATGTCCTTAGTCAATGAAACTGATTCACATTATAAGGAAGGACTTGCAGCACCTGATATAGAAAAGGAATTCTACCGCCTTCAAGGTGACCTTTATTCACTATGCAGGGTTAAGTTCATGAGGCTTGCATATTTAATCGGATATGGGACGAATATAGAAAGGAGTCCTGGAAATAGTGCTTCACTCAGCATGCTTCCCTGGCCCAAGCCTGCAGTTTGGCCCTCTGTTCCACCAGATGCTTCATCTGAGGTGCTGGCAAAAGAAAAGATAATTCTACAGTCAACTCCATCAGTAAAGCACTTTGGTATTCAGAGAAAACCATTGCCTCTTGAACCTTCTCTACTATTACGCGAGGCTAATCGGAGGAGAGCTTCCCTTTCTGCTGGGAATATGGTTGAAATGTTTGATGGCCGCCAAAATTTTAGTGACGGTTCAGGTTCAGATGCATCATTTAAGATGCCATCATTACAAAAAGTGCAAGCAAGTGTTATGTCACGTACTAACTCTTCACCAGGAATTTCTGAGAGCTCAATTGATCGACCCATGAGGCTTGCTGAAATTTATGTTGCTGCTGAATATGCTCTGCACAATACAGTTTCTAATCCTAATCTGTTGAAGTCTTTGTCATCTACAGAGGAGTTTGAGCAAAAATATCTTGGACTAACTAAAGGCGCTGCCGACAATTATCATCGATCCTGGTGGAAAAGACATGGAGTTGTTCTTGATGGAGAAATAGCATCTGTCTTTTTTAAGCATGGAAACTTTGATCTGGCAGCAAAGTCATATGAAAAGGTTTGTGCACTTTACGCTGGTGAAGGATGGCAGGATTTATTGGCAGAAGTCCTCCCCAATTTAGCAGAGTGTCAGAAAATACTCAATGATCAAGCTGGCTATCTATCGTCTTGTGTGAGATTGCTTTCATTGGATAAAGGCTTGTTTTTGACAAAGGAACGCCAGGCTTTTCAGTCAGAGGTGGTTCGTCTTGCACATGGCGAAATGGAGCAACCGGTGCCCCTAGACGTGTCATCTTTAATTACATTTTCTGGCAATCCTGGGCCTCCATTAGAATTATGTGATGGAGATTCCGGTACTCTATCAGTAACATTTTGGAGTGGCTTTCCTGATGATATCACTCTTGATTCACTAAGTCTCACTTTGAATGCAATATTTAATACGGATGAGGTTGCTAAGGCATTAATGAGCTCGACTGCAATTGTATTAAAGCCTGGTCGGAATACCATTACCCTGGATTTACCCCCACAGAAACCAGGTTCATATGTTTTTGGGGTTCTTACTGGGCAAATTGGGCAATTAAGATTCAGATCTCATAGCTTTTCCAAGGGTGGCCCTGAAGACAGCGTGGATTTCATGAGCTATGAAAAGCCTCCTAGACCTATCTTGAAGGTATACAAACCAAGACCTCTGGTTGATCTTGGTGCAGCTGTTTCCTCTGGTTTGCTGATAAATGAACCTCAGTGGGTAGGCATTATTGTAAGACCCATTAACTACTCTCTCAAAGGTGCTGTCTTGTATGTTGATACTGGACCTGGTCTTAAAATTGAAGATTCACATTTCATTGAGATGGAGAGCTATGCTGATGCATCAAAGAGTTCAGTTGGTGTGACTTACTGTAATGATGCTCTAAAGGATGGTTCTTTGGCTGTCGATAAAAGTTTTGAGAAGTTGACTCTGTGTGATGATGGAGTAGAGTTTCCACATTGGGCAAGCAATTCAACGTCTATTTTATGGATTCCAGTTCGTGCTATCAGTGAAAAGCTTACAGTAGGATCATCTTCAGTGGTTCCCCAGAGACAGAGCATTGTGGATGGAATGAGGATGATAGCACTCAAACTTGAATTTGGTGTATCTCACAATCAGATATTTGAGAGGACCCTAGCTGTGCATTTTACTGATCCTTTCCATTTGAGCACGCGAGTAACAGATAAATGCAATGATGGCACTTTGCTTCTGCAGGTCATTCTACACTCCGAAGTGAAAGCCACAGTGACCATCTTTGATGCTTGGCTTGATCTTCAAGATGGGTTTGTTAATACTGGACAAGGTGATGGGAGACCAACTTCAGCCTACTTTCCACTAGTAGTTTCTCCAAATTCTAAAGCAGGAATGCTATTTAGTATATGCTTAGGGAAGCCTAATGTTGAAGATGAAGCTAAGGCTCTTCAGTCGGATAGTATACTAAATATTAGATATGGAATTTCTGGTGATAGAACCAGTGGAGCACACCCACCTGTGTCTGCAGAATCTTCTGGGTCTGAGGGTGCTAGACAGGACTTAATTTTCAGAAGCACTCTTGCTTTACAAAGGCCTGTGCTTGATCCAGTCCTGGCTGTTGGTTTTCTTACTCTCTCTTCTGGTGGCCTTAGGGTTGGCCAGCTAGTTACCATGAAATGGAGGGTTGAAAGATTGAAGGATTTTGAGGGAAATGAAGTTTCTCCTAACAATGATGAAGTGTTATACGAAGTCGGTGCAAATGCTGAGAATTGGATGATTGCTGGGAGGAAAAGAGGGCATGTTTCTCTCTCCGCAAAGCAAGGTTCAAGGATAGAAATCTCAATATTATGTGTGCCTCTAGTGGCGGGATACGTTCGCCCCCCTCAACTTGGTCTGCCAGATGTTGGTGAATCGAATATAAGTTGCAGTCCGGCTGGGCCTCATCTGGTTTGTATCTTGCCTCCGGTTCTGAGCTCCTCCTTTTGTATTCCGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006891 GO:0007049 GO:0008150 GO:0009987 GO:0012505 GO:0016043 GO:0016192 GO:0016197 GO:0016482 GO:0022402 GO:0022607 GO:0030008 GO:0031410 GO:0031982 GO:0031984 GO:0032506 GO:0032991 GO:0034498 GO:0042147 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051301 GO:0051641 GO:0051649 GO:0061640 GO:0071840 GO:0097708 GO:0098791 GO:0099023 GO:1902410 GO:1903047 GO:1990071

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Foie-gras_1 TRAPPC10

Protein Analysis

1260

Amino Acids

140.33

Weight (kDa)

5.61

Isoelectric Point (pI)

44.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAPPC10_1st	PF23036	17 - 316	5e-52	Trafficking protein particle complex subunit 10-like, N-terminal
TRAPPC10	PF12584	1144 - 1223	2e-09	Trafficking protein particle complex subunit 10, TRAPPC10

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54440 AT5G54440 AT5G54440
fragaria_vesca	FvH4_3g20750 FvH4_3g20750 FvH4_3g20750 FvH4_3g20750
malus_domestica	MD03G1222200.v1.1 MD11G1239600.v1.1
prunus_persica	Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1
pyrus_communis	pycom03g17080 pycom11g21130
rosa_chinensis	RchiOBHm_Chr5g0034971
rosa_laevigata	RLG00000033586 RLG00000033589
rosa_multiflora	Rmu_co8343959.1_g000001 Rmu_sc0000879.1_g000039 Rmu_sc0021290.1_g000001
rosa_roxburghii	Rroxscaffold_1G00045410
rosa_rugosa	Rorug05G0149100 Rorug05G0149200 Rorug05G0149300
rosa_samantha	Rh5AG242200 Rh5BG241800 Rh5CG273300 Rh5DG250400
rosa_wichuraiana	Rw5G022120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	971, 1083
Acc36I	ACCTGC	1 cut(s)	3013
AccB1I	GGYRCC	1 cut(s)	2059
AccB7I	CCANNNNNTGG	2 cut(s)	3459, 3686
AccI	GTMKAC	2 cut(s)	2457, 3244
AccII	CGCG	3 cut(s)	328, 1401, 2983
AciI	CCGC	6 cut(s)	275, 326, 1126, 1462, 3594, 3647
AclWI	GGATC	5 cut(s)	303, 1737, 2845, 2957, 3380
AcoI	YGGCCR	2 cut(s)	1459, 3439
AcuI	CTGAAG	6 cut(s)	525, 677, 2421, 2829, 3114, 3215
AfaI	GTAC	4 cut(s)	576, 996, 1549, 2140
AfiI	CCNNNNNNNGG	3 cut(s)	3459, 3671, 3686
AflIII	ACRYGT	2 cut(s)	152, 2070
AgeI	ACCGGT	1 cut(s)	2056
AhlI	ACTAGT	1 cut(s)	3145
AjiI	CACGTC	1 cut(s)	2071
AjuI	GAANNNNNNNTTGG	2 cut(s)	650, 682
Alw21I	GWGCWC	7 cut(s)	117, 1580, 1852, 2255, 2981, 3292, 3758
Alw26I	GTCTC	4 cut(s)	990, 2204, 2854, 3115
Alw44I	GTGCAC	1 cut(s)	1848
AlwI	GGATC	5 cut(s)	303, 1737, 2845, 2957, 3380
AlwNI	CAGNNNCTG	2 cut(s)	892, 1103
Ama87I	CYCGRG	1 cut(s)	208
ApaLI	GTGCAC	1 cut(s)	1848
ApeKI	GCWGC	7 cut(s)	480, 809, 1097, 1619, 1724, 1823, 2489
ArsI	GACNNNNNNTTYG	2 cut(s)	2559, 2591
AseI	ATTAAT	1 cut(s)	2246
AsiGI	ACCGGT	1 cut(s)	2056
Asp700I	GAANNNNTTC	1 cut(s)	776
AspLEI	GCGC	2 cut(s)	330, 1724
AspS9I	GGNCC	8 cut(s)	277, 1251, 1269, 2105, 2396, 2594, 2940, 3719
AsuC2I	CCSGG	1 cut(s)	257
AvaI	CYCGRG	1 cut(s)	208
AvaII	GGWCC	3 cut(s)	277, 2594, 2940
AxyI	CCTNAGG	1 cut(s)	3431
BaeGI	GKGCMC	2 cut(s)	1852, 2064
BalI	TGGCCA	1 cut(s)	3441
BanI	GGYRCC	1 cut(s)	2059
BanII	GRGCYC	3 cut(s)	1580, 2255, 3758
BarI	GAAGNNNNNNTAC	6 cut(s)	162, 194, 693, 725, 1540, 1572
BauI	CACGAG	1 cut(s)	53
BbsI	GAAGAC	2 cut(s)	528, 2409
Bbv12I	GWGCWC	7 cut(s)	117, 1580, 1852, 2255, 2981, 3292, 3758
BbvI	GCAGC	7 cut(s)	467, 821, 1109, 1606, 1711, 1835, 2501
BceAI	ACGGC	1 cut(s)	1059
BcgI	CGANNNNNNTGC	2 cut(s)	3518, 3552
BciVI	GTATCC	2 cut(s)	950, 3644
BclI	TGATCA	3 cut(s)	403, 802, 1930
BcnI	CCSGG	1 cut(s)	257
BcoDI	GTCTC	4 cut(s)	990, 2204, 2854, 3115
BcuI	ACTAGT	1 cut(s)	3145
BfaI	CTAG	8 cut(s)	728, 2066, 2439, 2945, 3146, 3333, 3446, 3641
BfmI	CTRYAG	5 cut(s)	1260, 1325, 1680, 3020, 3306
BfoI	RGCGCY	1 cut(s)	1725
BfuAI	ACCTGC	1 cut(s)	3013
BfuI	GTATCC	2 cut(s)	950, 3644
BglII	AGATCT	1 cut(s)	2372
BisI	GCNGC	8 cut(s)	481, 810, 1098, 1462, 1620, 1725, 1824, 2490
BlsI	GCNGC	8 cut(s)	482, 811, 1099, 1463, 1621, 1726, 1825, 2491
Bme18I	GGWCC	3 cut(s)	277, 2594, 2940
BmeT110I	CYCGRG	1 cut(s)	208
BmgBI	CACGTC	1 cut(s)	2071
BmgT120I	GGNCC	8 cut(s)	277, 1251, 1269, 2105, 2396, 2594, 2940, 3719
BmiI	GGNNCC	6 cut(s)	227, 254, 261, 2061, 2853, 2942
BmrI	ACTGGG	1 cut(s)	2355
BmuI	ACTGGG	1 cut(s)	2355
BpiI	GAAGAC	2 cut(s)	528, 2409
Bpu10I	CCTNAGC	3 cut(s)	2238, 3193, 3222
BpuMI	CCSGG	1 cut(s)	257
Bsa29I	ATCGAT	1 cut(s)	1741
BsaAI	YACGTR	3 cut(s)	155, 713, 1547
BsaBI	GATNNNNATC	2 cut(s)	2371, 3617
BsaI	GGTCTC	1 cut(s)	3115
BsaJI	CCNNGG	6 cut(s)	384, 793, 1247, 2102, 2295, 2388
BsaWI	WCCGGW	3 cut(s)	2056, 2135, 3745
Bsc4I	CCNNNNNNNGG	3 cut(s)	3459, 3671, 3686
Bse118I	RCCGGY	2 cut(s)	222, 2056
Bse1I	ACTGG	7 cut(s)	626, 2350, 2596, 2804, 3109, 3282, 3389
Bse21I	CCTNAGG	1 cut(s)	3431
Bse3DI	GCAATG	3 cut(s)	812, 1370, 3007
Bse8I	GATNNNNATC	2 cut(s)	2371, 3617
BseCI	ATCGAT	1 cut(s)	1741
BseDI	CCNNGG	6 cut(s)	384, 793, 1247, 2102, 2295, 2388
BseGI	GGATG	7 cut(s)	315, 1874, 2233, 2704, 2881, 2892, 3561
BseJI	GATNNNNATC	2 cut(s)	2371, 3617
BseLI	CCNNNNNNNGG	3 cut(s)	3459, 3671, 3686
BseMI	GCAATG	3 cut(s)	812, 1370, 3007
BseMII	CTCAG	8 cut(s)	32, 1249, 1287, 1563, 2537, 3315, 3537, 3743
BseNI	ACTGG	7 cut(s)	626, 2350, 2596, 2804, 3109, 3282, 3389
BseRI	GAGGAG	5 cut(s)	125, 798, 1429, 1700, 3748
BseSI	GKGCMC	2 cut(s)	1852, 2064
BseXI	GCAGC	7 cut(s)	467, 821, 1109, 1606, 1711, 1835, 2501
BseYI	CCCAGC	3 cut(s)	1433, 3563, 3716
BsgI	GTGCAG	2 cut(s)	1619, 2508
Bsh1236I	CGCG	3 cut(s)	328, 1401, 2983
BshNI	GGYRCC	1 cut(s)	2059
BshTI	ACCGGT	1 cut(s)	2056
BshVI	ATCGAT	1 cut(s)	1741
BsiHKAI	GWGCWC	7 cut(s)	117, 1580, 1852, 2255, 2981, 3292, 3758
BsiHKCI	CYCGRG	1 cut(s)	208
BsiSI	CCGG	7 cut(s)	223, 256, 2057, 2136, 3713, 3746, 3773
BslFI	GGGAC	1 cut(s)	1210
BslI	CCNNNNNNNGG	3 cut(s)	3459, 3671, 3686
BsmAI	GTCTC	4 cut(s)	990, 2204, 2854, 3115
BsmFI	GGGAC	1 cut(s)	1210
BsmI	GAATGC	2 cut(s)	2215, 3180
Bso31I	GGTCTC	1 cut(s)	3115
BsoBI	CYCGRG	1 cut(s)	208
Bsp1286I	GDGCHC	8 cut(s)	117, 1580, 1852, 2064, 2255, 2981, 3292, 3758
Bsp1407I	TGTACA	2 cut(s)	574, 994
Bsp19I	CCATGG	1 cut(s)	793
BspACI	CCGC	6 cut(s)	275, 326, 1126, 1462, 3594, 3647
BspCNI	CTCAG	8 cut(s)	31, 1248, 1288, 1564, 2536, 3316, 3538, 3744
BspDI	ATCGAT	1 cut(s)	1741
BspFNI	CGCG	3 cut(s)	328, 1401, 2983
BspHI	TCATGA	3 cut(s)	697, 1167, 2418
BspLI	GGNNCC	6 cut(s)	227, 254, 261, 2061, 2853, 2942
BspMAI	CTGCAG	3 cut(s)	1264, 3024, 3310
BspMI	ACCTGC	1 cut(s)	3013
BspPI	GGATC	5 cut(s)	303, 1737, 2845, 2957, 3380
BspQI	GCTCTTC	1 cut(s)	3234
BspT107I	GGYRCC	1 cut(s)	2059
BspTNI	GGTCTC	1 cut(s)	3115
BsrDI	GCAATG	3 cut(s)	812, 1370, 3007
BsrFI	RCCGGY	2 cut(s)	222, 2056
BsrGI	TGTACA	2 cut(s)	574, 994
BsrI	ACTGG	7 cut(s)	626, 2350, 2596, 2804, 3109, 3282, 3389
BssAI	RCCGGY	2 cut(s)	222, 2056
BssECI	CCNNGG	6 cut(s)	384, 793, 1247, 2102, 2295, 2388
BssNAI	GTATAC	2 cut(s)	2458, 3245
BssSI	CACGAG	1 cut(s)	53
BssT1I	CCWWGG	3 cut(s)	384, 793, 2388
Bst1107I	GTATAC	2 cut(s)	2458, 3245
Bst2BI	CACGAG	1 cut(s)	53
Bst4CI	ACNGT	9 cut(s)	94, 751, 888, 1329, 1481, 1645, 2681, 2833, 3055
Bst6I	CTCTTC	4 cut(s)	461, 1561, 3234, 3424
BstAPI	GCANNNNNTGC	1 cut(s)	2059
BstAUI	TGTACA	2 cut(s)	574, 994
BstBAI	YACGTR	3 cut(s)	155, 713, 1547
BstDSI	CCRYGG	1 cut(s)	793
BstEII	GGTNACC	1 cut(s)	1136
BstF5I	GGATG	7 cut(s)	315, 1874, 2233, 2704, 2881, 2892, 3561
BstFNI	CGCG	3 cut(s)	328, 1401, 2983
BstH2I	RGCGCY	1 cut(s)	1725
BstHHI	GCGC	2 cut(s)	330, 1724
BstMAI	GTCTC	4 cut(s)	990, 2204, 2854, 3115
BstMWI	GCNNNNNNNGC	6 cut(s)	1249, 1628, 1856, 2059, 2356, 3006
BstNSI	RCATGY	3 cut(s)	1054, 1243, 3584
BstPI	GGTNACC	1 cut(s)	1136
BstSFI	CTRYAG	5 cut(s)	1260, 1325, 1680, 3020, 3306
BstSLI	GKGCMC	2 cut(s)	1852, 2064
BstUI	CGCG	3 cut(s)	328, 1401, 2983
BstV1I	GCAGC	7 cut(s)	467, 821, 1109, 1606, 1711, 1835, 2501
BstV2I	GAAGAC	2 cut(s)	528, 2409
BstX2I	RGATCY	2 cut(s)	295, 2372
BstXI	CCANNNNNNTGG	3 cut(s)	418, 541, 2296
BstYI	RGATCY	2 cut(s)	295, 2372
BstZ17I	GTATAC	2 cut(s)	2458, 3245
Bsu15I	ATCGAT	1 cut(s)	1741
Bsu36I	CCTNAGG	1 cut(s)	3431
BsuI	GTATCC	2 cut(s)	950, 3644
BsuTUI	ATCGAT	1 cut(s)	1741
BtgI	CCRYGG	1 cut(s)	793
BtrI	CACGTC	1 cut(s)	2071
BtsCI	GGATG	7 cut(s)	315, 1874, 2233, 2704, 2881, 2892, 3561
BtsIMutI	CAGTG	5 cut(s)	2531, 2824, 2853, 3060, 3289
BveI	ACCTGC	1 cut(s)	3013
CaiI	CAGNNNCTG	2 cut(s)	892, 1103
CciI	TCATGA	3 cut(s)	697, 1167, 2418
CfoI	GCGC	2 cut(s)	330, 1724
Cfr10I	RCCGGY	2 cut(s)	222, 2056
Cfr13I	GGNCC	8 cut(s)	277, 1251, 1269, 2105, 2396, 2594, 2940, 3719
ClaI	ATCGAT	1 cut(s)	1741
CsiI	ACCWGGT	2 cut(s)	2317, 2596
Csp6I	GTAC	4 cut(s)	575, 995, 1548, 2139
CspAI	ACCGGT	1 cut(s)	2056
CviQI	GTAC	4 cut(s)	575, 995, 1548, 2139
DraI	TTTAAA	1 cut(s)	127
EaeI	YGGCCR	2 cut(s)	1459, 3439
Eam1104I	CTCTTC	4 cut(s)	461, 1561, 3234, 3424
EarI	CTCTTC	4 cut(s)	461, 1561, 3234, 3424
Ecl136II	GAGCTC	3 cut(s)	1578, 2253, 3756
Eco130I	CCWWGG	3 cut(s)	384, 793, 2388
Eco147I	AGGCCT	1 cut(s)	3376
Eco24I	GRGCYC	3 cut(s)	1580, 2255, 3758
Eco31I	GGTCTC	1 cut(s)	3115
Eco32I	GATATC	1 cut(s)	2179
Eco47I	GGWCC	3 cut(s)	277, 2594, 2940
Eco53kI	GAGCTC	3 cut(s)	1578, 2253, 3756
Eco57I	CTGAAG	6 cut(s)	525, 677, 2421, 2829, 3114, 3215
Eco81I	CCTNAGG	1 cut(s)	3431
Eco88I	CYCGRG	1 cut(s)	208
Eco91I	GGTNACC	1 cut(s)	1136
EcoICRI	GAGCTC	3 cut(s)	1578, 2253, 3756
EcoO109I	RGGNCCY	1 cut(s)	2940
EcoO65I	GGTNACC	1 cut(s)	1136
EcoRI	GAATTC	3 cut(s)	37, 188, 1118
EcoRV	GATATC	1 cut(s)	2179
EcoT14I	CCWWGG	3 cut(s)	384, 793, 2388
EcoT22I	ATGCAT	2 cut(s)	1498, 2653
EcoT38I	GRGCYC	3 cut(s)	1580, 2255, 3758
ErhI	CCWWGG	3 cut(s)	384, 793, 2388
FalI	AAGNNNNNCTT	8 cut(s)	650, 682, 655, 687, 1125, 1157, 2188, 2220
FaqI	GGGAC	1 cut(s)	1210
FauI	CCCGC	1 cut(s)	3640
FauNDI	CATATG	3 cut(s)	265, 1834, 2326
FbaI	TGATCA	3 cut(s)	403, 802, 1930
FblI	GTMKAC	2 cut(s)	2457, 3244
Fnu4HI	GCNGC	8 cut(s)	481, 810, 1098, 1462, 1620, 1725, 1824, 2490
FokI	GGATG	7 cut(s)	302, 1881, 2240, 2711, 2888, 2899, 3568
FriOI	GRGCYC	3 cut(s)	1580, 2255, 3758
Fsp4HI	GCNGC	8 cut(s)	481, 810, 1098, 1462, 1620, 1725, 1824, 2490
FspBI	CTAG	8 cut(s)	728, 2066, 2439, 2945, 3146, 3333, 3446, 3641
GlaI	GCGC	2 cut(s)	329, 1723
GluI	GCNGC	8 cut(s)	481, 810, 1098, 1462, 1620, 1725, 1824, 2490
GsaI	CCCAGC	3 cut(s)	1437, 3567, 3720
HaeII	RGCGCY	1 cut(s)	1725
HapII	CCGG	7 cut(s)	223, 256, 2057, 2136, 3713, 3746, 3773
HhaI	GCGC	2 cut(s)	330, 1724
Hin6I	GCGC	2 cut(s)	328, 1722
HinP1I	GCGC	2 cut(s)	328, 1722
HincII	GTYRAC	3 cut(s)	790, 1332, 2736
HindII	GTYRAC	3 cut(s)	790, 1332, 2736
HindIII	AAGCTT	5 cut(s)	602, 664, 911, 973, 2825
HpaII	CCGG	7 cut(s)	223, 256, 2057, 2136, 3713, 3746, 3773
Hpy166II	GTNNAC	8 cut(s)	575, 611, 790, 1332, 1850, 2458, 2736, 3245
Hpy8I	GTNNAC	8 cut(s)	575, 611, 790, 1332, 1850, 2458, 2736, 3245
HpyAV	CCTTC	8 cut(s)	652, 766, 1082, 1139, 1395, 1859, 2446, 3472
HpyCH4III	ACNGT	9 cut(s)	94, 751, 888, 1329, 1481, 1645, 2681, 2833, 3055
HpyCH4IV	ACGT	6 cut(s)	154, 712, 1546, 2070, 2786, 3654
HpyF10VI	GCNNNNNNNGC	6 cut(s)	1249, 1628, 1856, 2059, 2356, 3006
HpySE526I	ACGT	6 cut(s)	154, 712, 1546, 2070, 2786, 3654
HspAI	GCGC	2 cut(s)	328, 1722
Ksp22I	TGATCA	3 cut(s)	403, 802, 1930
LguI	GCTCTTC	1 cut(s)	3234
LmnI	GCTCC	5 cut(s)	112, 259, 2050, 3287, 3761
Lsp1109I	GCAGC	7 cut(s)	467, 821, 1109, 1606, 1711, 1835, 2501
MabI	ACCWGGT	2 cut(s)	2317, 2596
MaeI	CTAG	8 cut(s)	728, 2066, 2439, 2945, 3146, 3333, 3446, 3641
MaeII	ACGT	6 cut(s)	154, 712, 1546, 2070, 2786, 3654
MaeIII	GTNAC	9 cut(s)	283, 1136, 1475, 1542, 2149, 2671, 2986, 3055, 3448
MfeI	CAATTG	2 cut(s)	1581, 2262
MflI	RGATCY	2 cut(s)	295, 2372
MhlI	GDGCHC	8 cut(s)	117, 1580, 1852, 2064, 2255, 2981, 3292, 3758
MlsI	TGGCCA	1 cut(s)	3441
MluNI	TGGCCA	1 cut(s)	3441
MlyI	GAGTC	4 cut(s)	200, 854, 1222, 2731
MmeI	TCCRAC	2 cut(s)	2261, 3216
Mox20I	TGGCCA	1 cut(s)	3441
Mph1103I	ATGCAT	2 cut(s)	1498, 2653
MroXI	GAANNNNTTC	1 cut(s)	776
MscI	TGGCCA	1 cut(s)	3441
MslI	CAYNNNNRTG	3 cut(s)	696, 798, 2630
Msp20I	TGGCCA	1 cut(s)	3441
MspA1I	CMGCKG	1 cut(s)	2492
MspI	CCGG	7 cut(s)	223, 256, 2057, 2136, 3713, 3746, 3773
MunI	CAATTG	2 cut(s)	1581, 2262
Mva1269I	GAATGC	2 cut(s)	2215, 3180
MvnI	CGCG	3 cut(s)	328, 1401, 2983
MwoI	GCNNNNNNNGC	6 cut(s)	1249, 1628, 1856, 2059, 2356, 3006
NciI	CCSGG	1 cut(s)	257
NcoI	CCATGG	1 cut(s)	793
NdeI	CATATG	3 cut(s)	265, 1834, 2326
NlaIV	GGNNCC	6 cut(s)	227, 254, 261, 2061, 2853, 2942
NmuCI	GTSAC	6 cut(s)	283, 1136, 1475, 1542, 2671, 3055
NsiI	ATGCAT	2 cut(s)	1498, 2653
NspI	RCATGY	3 cut(s)	1054, 1243, 3584
PaeI	GCATGC	1 cut(s)	1243
PaeR7I	CTCGAG	1 cut(s)	208
PagI	TCATGA	3 cut(s)	697, 1167, 2418
PceI	AGGCCT	1 cut(s)	3376
PciSI	GCTCTTC	1 cut(s)	3234
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PctI	GAATGC	2 cut(s)	2215, 3180
PdmI	GAANNNNTTC	1 cut(s)	776
PflFI	GACNNNGTC	1 cut(s)	2598
PflMI	CCANNNNNTGG	2 cut(s)	3459, 3686
PfoI	TCCNGGA	2 cut(s)	255, 1216
PinAI	ACCGGT	1 cut(s)	2056
PkrI	GCNGC	8 cut(s)	482, 811, 1099, 1463, 1621, 1726, 1825, 2491
PleI	GAGTC	4 cut(s)	200, 854, 1221, 2731
PpsI	GAGTC	4 cut(s)	200, 854, 1221, 2731
Ppu21I	YACGTR	3 cut(s)	155, 713, 1547
PpuMI	RGGWCCY	1 cut(s)	2940
PshBI	ATTAAT	1 cut(s)	2246
PsiI	TTATAA	2 cut(s)	971, 1083
Psp124BI	GAGCTC	3 cut(s)	1580, 2255, 3758
Psp5II	RGGWCCY	1 cut(s)	2940
PspEI	GGTNACC	1 cut(s)	1136
PspFI	CCCAGC	3 cut(s)	1433, 3563, 3716
PspN4I	GGNNCC	6 cut(s)	227, 254, 261, 2061, 2853, 2942
PspPI	GGNCC	8 cut(s)	277, 1251, 1269, 2105, 2396, 2594, 2940, 3719
PspPPI	RGGWCCY	1 cut(s)	2940
PspXI	VCTCGAGB	1 cut(s)	208
PsrI	GAACNNNNNNTAC	2 cut(s)	1374, 1406
PstI	CTGCAG	3 cut(s)	1264, 3024, 3310
PstNI	CAGNNNCTG	2 cut(s)	892, 1103
PsuI	RGATCY	2 cut(s)	295, 2372
PsyI	GACNNNGTC	1 cut(s)	2598
PvuII	CAGCTG	1 cut(s)	2492
RsaI	GTAC	4 cut(s)	576, 996, 1549, 2140
RsaNI	GTAC	4 cut(s)	575, 995, 1548, 2139
RseI	CAYNNNNRTG	3 cut(s)	696, 798, 2630
SacI	GAGCTC	3 cut(s)	1580, 2255, 3758
SapI	GCTCTTC	1 cut(s)	3234
SatI	GCNGC	8 cut(s)	481, 810, 1098, 1462, 1620, 1725, 1824, 2490
Sau96I	GGNCC	8 cut(s)	277, 1251, 1269, 2105, 2396, 2594, 2940, 3719
SchI	GAGTC	4 cut(s)	200, 854, 1222, 2731
SduI	GDGCHC	8 cut(s)	117, 1580, 1852, 2064, 2255, 2981, 3292, 3758
SexAI	ACCWGGT	2 cut(s)	2317, 2596
SfcI	CTRYAG	5 cut(s)	1260, 1325, 1680, 3020, 3306
Sfr274I	CTCGAG	1 cut(s)	208
SinI	GGWCC	3 cut(s)	277, 2594, 2940
SlaI	CTCGAG	1 cut(s)	208
SmiMI	CAYNNNNRTG	3 cut(s)	696, 798, 2630
SmlI	CTYRAG	1 cut(s)	208
SmoI	CTYRAG	1 cut(s)	208
SpeI	ACTAGT	1 cut(s)	3145
SphI	GCATGC	1 cut(s)	1243
SseBI	AGGCCT	1 cut(s)	3376
SsiI	CCGC	6 cut(s)	275, 326, 1126, 1462, 3594, 3647
SspI	AATATT	3 cut(s)	2217, 3253, 3627
SspMI	CTAG	8 cut(s)	728, 2066, 2439, 2945, 3146, 3333, 3446, 3641
SstI	GAGCTC	3 cut(s)	1580, 2255, 3758
StuI	AGGCCT	1 cut(s)	3376
StyI	CCWWGG	3 cut(s)	384, 793, 2388
TaaI	ACNGT	9 cut(s)	94, 751, 888, 1329, 1481, 1645, 2681, 2833, 3055
TaiI	ACGT	6 cut(s)	157, 715, 1549, 2073, 2789, 3657
TaqI	TCGA	8 cut(s)	45, 209, 489, 1588, 1741, 2255, 2715, 3695
TatI	WGTACW	2 cut(s)	574, 994
TauI	GCSGC	1 cut(s)	1464
TscAI	CASTG	5 cut(s)	2531, 2824, 2853, 3060, 3289
TseFI	GTSAC	6 cut(s)	283, 1136, 1475, 1542, 2671, 3055
TseI	GCWGC	7 cut(s)	480, 809, 1097, 1619, 1724, 1823, 2489
Tsp45I	GTSAC	6 cut(s)	283, 1136, 1475, 1542, 2671, 3055
TspGWI	ACGGA	2 cut(s)	784, 2240
TspRI	CASTG	5 cut(s)	2531, 2824, 2853, 3060, 3289
Tth111I	GACNNNGTC	1 cut(s)	2598
Van91I	CCANNNNNTGG	2 cut(s)	3459, 3686
VneI	GTGCAC	1 cut(s)	1848
VpaK11BI	GGWCC	3 cut(s)	277, 2594, 2940
VspI	ATTAAT	1 cut(s)	2246
XceI	RCATGY	3 cut(s)	1054, 1243, 3584
XhoI	CTCGAG	1 cut(s)	208
XmiI	GTMKAC	2 cut(s)	2457, 3244
XmnI	GAANNNNTTC	1 cut(s)	776
XspI	CTAG	8 cut(s)	728, 2066, 2439, 2945, 3146, 3333, 3446, 3641
Zsp2I	ATGCAT	2 cut(s)	1498, 2653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.