trafficking protein particle complex
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G54440 AT5G54440 AT5G54440 |
| fragaria_vesca | FvH4_3g20750 FvH4_3g20750 FvH4_3g20750 FvH4_3g20750 |
| malus_domestica | MD03G1222200.v1.1 MD11G1239600.v1.1 |
| prunus_persica | Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1 |
| pyrus_communis | pycom03g17080 pycom11g21130 |
| rosa_chinensis | RchiOBHm_Chr5g0034971 |
| rosa_laevigata | RLG00000033586 RLG00000033589 |
| rosa_multiflora | Rmu_co8343959.1_g000001 Rmu_sc0000879.1_g000039 Rmu_sc0021290.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00045410 |
| rosa_rugosa | Rorug05G0149100 Rorug05G0149200 Rorug05G0149300 |
| rosa_samantha | Rh5AG242200 Rh5BG241800 Rh5CG273300 Rh5DG250400 |
| rosa_wichuraiana | Rw5G022120 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 284 |
| AciI | CCGC | 1 cut(s) | 275 |
| AclWI | GGATC | 1 cut(s) | 303 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 4 cut(s) | 37, 175, 188, 305 |
| AgsI | TTSAA | 3 cut(s) | 68, 127, 310 |
| AluBI | AGCT | 1 cut(s) | 134 |
| AluI | AGCT | 1 cut(s) | 134 |
| Alw21I | GWGCWC | 1 cut(s) | 117 |
| AlwI | GGATC | 1 cut(s) | 303 |
| AoxI | GGCC | 2 cut(s) | 3, 86 |
| ApeKI | GCWGC | 1 cut(s) | 219 |
| ApoI | RAATTY | 4 cut(s) | 37, 175, 188, 305 |
| AspS9I | GGNCC | 1 cut(s) | 277 |
| AvaII | GGWCC | 1 cut(s) | 277 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BanI | GGYRCC | 1 cut(s) | 284 |
| Bbv12I | GWGCWC | 1 cut(s) | 117 |
| BbvI | GCAGC | 1 cut(s) | 231 |
| BccI | CCATC | 1 cut(s) | 38 |
| BceAI | ACGGC | 2 cut(s) | 47, 344 |
| BisI | GCNGC | 1 cut(s) | 220 |
| BlsI | GCNGC | 1 cut(s) | 221 |
| Bme18I | GGWCC | 1 cut(s) | 277 |
| BmgT120I | GGNCC | 1 cut(s) | 277 |
| BmiI | GGNNCC | 2 cut(s) | 261, 286 |
| BmsI | GCATC | 1 cut(s) | 196 |
| BsaJI | CCNNGG | 2 cut(s) | 280, 326 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 227, 257 |
| BseDI | CCNNGG | 2 cut(s) | 280, 326 |
| BseMII | CTCAG | 1 cut(s) | 32 |
| BseRI | GAGGAG | 1 cut(s) | 125 |
| BseXI | GCAGC | 1 cut(s) | 231 |
| BshFI | GGCC | 2 cut(s) | 5, 88 |
| BshNI | GGYRCC | 1 cut(s) | 284 |
| BsiHKAI | GWGCWC | 1 cut(s) | 117 |
| BsnI | GGCC | 2 cut(s) | 5, 88 |
| Bsp1286I | GDGCHC | 1 cut(s) | 117 |
| Bsp143I | GATC | 2 cut(s) | 46, 295 |
| BspACI | CCGC | 1 cut(s) | 275 |
| BspANI | GGCC | 2 cut(s) | 5, 88 |
| BspCNI | CTCAG | 1 cut(s) | 31 |
| BspLI | GGNNCC | 2 cut(s) | 261, 286 |
| BspPI | GGATC | 1 cut(s) | 303 |
| BspT107I | GGYRCC | 1 cut(s) | 284 |
| BssECI | CCNNGG | 2 cut(s) | 280, 326 |
| BssMI | GATC | 2 cut(s) | 46, 295 |
| Bst4CI | ACNGT | 1 cut(s) | 94 |
| BstDEI | CTNAG | 1 cut(s) | 18 |
| BstDSI | CCRYGG | 1 cut(s) | 326 |
| BstKTI | GATC | 2 cut(s) | 49, 298 |
| BstMBI | GATC | 2 cut(s) | 46, 295 |
| BstV1I | GCAGC | 1 cut(s) | 231 |
| BstX2I | RGATCY | 1 cut(s) | 295 |
| BstYI | RGATCY | 1 cut(s) | 295 |
| BsuRI | GGCC | 2 cut(s) | 5, 88 |
| BtgI | CCRYGG | 1 cut(s) | 326 |
| Cfr13I | GGNCC | 1 cut(s) | 277 |
| CviJI | RGCY | 6 cut(s) | 5, 88, 134, 222, 262, 331 |
| CviKI_1 | RGCY | 6 cut(s) | 5, 88, 134, 222, 262, 331 |
| DdeI | CTNAG | 1 cut(s) | 18 |
| DpnI | GATC | 2 cut(s) | 48, 297 |
| DpnII | GATC | 2 cut(s) | 46, 295 |
| DraI | TTTAAA | 1 cut(s) | 141 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eco47I | GGWCC | 1 cut(s) | 277 |
| EcoRI | GAATTC | 3 cut(s) | 37, 188, 305 |
| FaiI | YATR | 3 cut(s) | 194, 265, 267 |
| FauNDI | CATATG | 1 cut(s) | 265 |
| Fnu4HI | GCNGC | 1 cut(s) | 220 |
| Fsp4HI | GCNGC | 1 cut(s) | 220 |
| GluI | GCNGC | 1 cut(s) | 220 |
| HaeIII | GGCC | 2 cut(s) | 5, 88 |
| HinfI | GANTC | 1 cut(s) | 225 |
| Hpy188I | TCNGA | 1 cut(s) | 374 |
| Hpy188III | TCNNGA | 6 cut(s) | 25, 34, 97, 257, 299, 310 |
| HpyAV | CCTTC | 1 cut(s) | 94 |
| HpyCH4III | ACNGT | 1 cut(s) | 94 |
| HpyCH4V | TGCA | 2 cut(s) | 209, 269 |
| HpyF3I | CTNAG | 1 cut(s) | 18 |
| Kzo9I | GATC | 2 cut(s) | 46, 295 |
| LmnI | GCTCC | 3 cut(s) | 112, 235, 259 |
| LpnPI | CCDG | 4 cut(s) | 38, 174, 218, 301 |
| Lsp1109I | GCAGC | 1 cut(s) | 231 |
| LweI | GCATC | 1 cut(s) | 196 |
| MalI | GATC | 2 cut(s) | 48, 297 |
| MboI | GATC | 2 cut(s) | 46, 295 |
| MboII | GAAGA | 1 cut(s) | 80 |
| MflI | RGATCY | 1 cut(s) | 295 |
| MhlI | GDGCHC | 1 cut(s) | 117 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 6 cut(s) | 37, 175, 188, 305, 339, 366 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MnlI | CCTC | 3 cut(s) | 103, 286, 290 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 2 cut(s) | 140, 197 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| NdeI | CATATG | 1 cut(s) | 265 |
| NdeII | GATC | 2 cut(s) | 46, 295 |
| NlaIV | GGNNCC | 2 cut(s) | 261, 286 |
| NmeAIII | GCCGAG | 1 cut(s) | 261 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 51, 60 |
| PfeI | GAWTC | 1 cut(s) | 225 |
| PkrI | GCNGC | 1 cut(s) | 221 |
| PspN4I | GGNNCC | 2 cut(s) | 261, 286 |
| PspPI | GGNCC | 1 cut(s) | 277 |
| PsuI | RGATCY | 1 cut(s) | 295 |
| SaqAI | TTAA | 2 cut(s) | 140, 197 |
| SatI | GCNGC | 1 cut(s) | 220 |
| Sau3AI | GATC | 2 cut(s) | 46, 295 |
| Sau96I | GGNCC | 1 cut(s) | 277 |
| SduI | GDGCHC | 1 cut(s) | 117 |
| SetI | ASST | 2 cut(s) | 136, 290 |
| SfaNI | GCATC | 1 cut(s) | 196 |
| SinI | GGWCC | 1 cut(s) | 277 |
| Sse9I | AATT | 6 cut(s) | 37, 175, 188, 305, 339, 366 |
| SsiI | CCGC | 1 cut(s) | 275 |
| TaaI | ACNGT | 1 cut(s) | 94 |
| TaqI | TCGA | 1 cut(s) | 45 |
| TasI | AATT | 6 cut(s) | 37, 175, 188, 305, 339, 366 |
| TfiI | GAWTC | 1 cut(s) | 225 |
| Tru1I | TTAA | 2 cut(s) | 140, 197 |
| Tru9I | TTAA | 2 cut(s) | 140, 197 |
| TseI | GCWGC | 1 cut(s) | 219 |
| TspDTI | ATGAA | 3 cut(s) | 181, 318, 369 |
| TspGWI | ACGGA | 1 cut(s) | 170 |
| VpaK11BI | GGWCC | 1 cut(s) | 277 |
| XapI | RAATTY | 4 cut(s) | 37, 175, 188, 305 |