Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004789

Physical Location & Seq

Genomic Coordinates Reverse (-)

13851581 .. 13856193

Gene Structure 4613 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0149200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGAGTTCAACAAATTCTAATCGTAGAAGAAAACAACCAGAACAGCCATCACACAATTGGACCCCTCGTGAATATGTGGCTCTAGTTGAGGCGCTAACAGAGATATGTGTTGGTGGATATTGGAAGGTTGACAATGGCTTCAGGTCTGGGTACTTGGGTAAACTTGAACAGATTATAGTGCAAAAGCTACCAAATTGTGGGCTTAAGGCAAACCCCCACATTGAGTCTCGTTTGAAGACATTGAAGAAACAAACACTTGCCATCTACGACATGCTTTCTAACTCAAGTGGGTTCTCATGGAACCATGAAGAAAAAATGGTGGTGTGTGAAAAACAAGTGTTTGATGATTGGGTTAAGGTTCATAAGGATGAAAAAGGACTGAGAATGAAACCATTCATTCATTATGATAGCTTGATAGAAGCCTTTGGCAGAGACCGTGCAAATGGATTAGGAGCTGAAGGACCAGCTGAAGCAGATGAAGATCTCAATAATGAGAATAACTATGCTGACATTGAAGAAAATGGTTTGGATGAAATCACAATTCCTTCATCTGTTACCCGTAATTCTGCAAACCCACCTTCTGCTCGAACTAGGAAACGAGCACGAGATGCTTATTCTCAATGTTTGGGAGACATGGCTAGCACATTACGCTCCTTTGTGGACGTGACCAATGCACACTTGGAGACAATGCAGGGAGTACTCATGAATGAGCATGTAACATCTGAAAGAAGAGGTAAGCTTGTTGACGAGCTTATGAAAATCGAAGGCATAAATGACTATGATGTTATAGAAGCTGCAGCTGCAATTATTGGTGATGACTCCAAAATTGAACTCTTGTTCAATTTTCCAGACAACGTAAAAAGTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006891 GO:0007049 GO:0008150 GO:0009987 GO:0012505 GO:0016043 GO:0016192 GO:0016197 GO:0016482 GO:0022402 GO:0022607 GO:0030008 GO:0031410 GO:0031982 GO:0031984 GO:0032506 GO:0032991 GO:0034498 GO:0042147 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051301 GO:0051641 GO:0051649 GO:0061640 GO:0071840 GO:0097708 GO:0098791 GO:0099023 GO:1902410 GO:1903047 GO:1990071

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Foie-gras_1 TRAPPC10

Protein Analysis

289

Amino Acids

32.59

Weight (kDa)

5.39

Isoelectric Point (pI)

50.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_3	PF12776	19 - 115	3.3e-06	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54440 AT5G54440 AT5G54440
fragaria_vesca	FvH4_3g20750 FvH4_3g20750 FvH4_3g20750 FvH4_3g20750
malus_domestica	MD03G1222200.v1.1 MD11G1239600.v1.1
prunus_persica	Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1
pyrus_communis	pycom03g17080 pycom11g21130
rosa_chinensis	RchiOBHm_Chr5g0034971
rosa_laevigata	RLG00000033586 RLG00000033589
rosa_multiflora	Rmu_co8343959.1_g000001 Rmu_sc0000879.1_g000039 Rmu_sc0021290.1_g000001
rosa_roxburghii	Rroxscaffold_1G00045410
rosa_rugosa	Rorug05G0149100 Rorug05G0149200 Rorug05G0149300
rosa_samantha	Rh5AG242200 Rh5BG241800 Rh5CG273300 Rh5DG250400
rosa_wichuraiana	Rw5G022120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	197
AcsI	RAATTY	1 cut(s)	13
AcuI	CTGAAG	3 cut(s)	124, 477, 489
AfaI	GTAC	2 cut(s)	152, 699
AfiI	CCNNNNNNNGG	1 cut(s)	197
AflII	CTTAAG	1 cut(s)	203
AgsI	TTSAA	7 cut(s)	9, 167, 235, 244, 515, 830, 841
AjiI	CACGTC	1 cut(s)	664
AluBI	AGCT	8 cut(s)	187, 411, 455, 467, 739, 751, 794, 800
AluI	AGCT	8 cut(s)	187, 411, 455, 467, 739, 751, 794, 800
Alw21I	GWGCWC	1 cut(s)	604
Alw26I	GTCTC	4 cut(s)	231, 426, 624, 677
ApeKI	GCWGC	3 cut(s)	794, 797, 800
ApoI	RAATTY	1 cut(s)	13
Asp700I	GAANNNNTTC	1 cut(s)	392
AspLEI	GCGC	1 cut(s)	94
AspS9I	GGNCC	2 cut(s)	60, 461
AsuHPI	GGTGA	1 cut(s)	824
AsuNHI	GCTAGC	1 cut(s)	638
AvaII	GGWCC	2 cut(s)	60, 461
BaeI	ACNNNNGTAYC	2 cut(s)	142, 175
BauI	CACGAG	2 cut(s)	66, 603
BbsI	GAAGAC	1 cut(s)	242
Bbv12I	GWGCWC	1 cut(s)	604
BbvI	GCAGC	3 cut(s)	781, 787, 809
BccI	CCATC	2 cut(s)	55, 269
BcoDI	GTCTC	4 cut(s)	231, 426, 624, 677
BfaI	CTAG	3 cut(s)	83, 591, 639
BfmI	CTRYAG	1 cut(s)	795
BfoI	RGCGCY	1 cut(s)	95
BfrI	CTTAAG	1 cut(s)	203
BglII	AGATCT	1 cut(s)	481
BisI	GCNGC	3 cut(s)	795, 798, 801
BlsI	GCNGC	3 cut(s)	796, 799, 802
BmcAI	AGTACT	1 cut(s)	699
Bme18I	GGWCC	2 cut(s)	60, 461
BmgBI	CACGTC	1 cut(s)	664
BmgT120I	GGNCC	2 cut(s)	60, 461
BmiI	GGNNCC	2 cut(s)	62, 302
BmsI	GCATC	1 cut(s)	598
BmtI	GCTAGC	1 cut(s)	642
BpiI	GAAGAC	1 cut(s)	242
BpuEI	CTTGAG	1 cut(s)	268
BsaBI	GATNNNNATC	1 cut(s)	480
BsaI	GGTCTC	1 cut(s)	426
Bsc4I	CCNNNNNNNGG	1 cut(s)	197
Bse8I	GATNNNNATC	1 cut(s)	480
BseGI	GGATG	2 cut(s)	373, 535
BseJI	GATNNNNATC	1 cut(s)	480
BseLI	CCNNNNNNNGG	1 cut(s)	197
BseMII	CTCAG	1 cut(s)	371
BseXI	GCAGC	3 cut(s)	781, 787, 809
BsiHKAI	GWGCWC	1 cut(s)	604
BslI	CCNNNNNNNGG	1 cut(s)	197
BsmAI	GTCTC	4 cut(s)	231, 426, 624, 677
Bso31I	GGTCTC	1 cut(s)	426
Bsp1286I	GDGCHC	1 cut(s)	604
Bsp143I	GATC	1 cut(s)	481
BspCNI	CTCAG	1 cut(s)	372
BspHI	TCATGA	1 cut(s)	702
BspLI	GGNNCC	2 cut(s)	62, 302
BspMAI	CTGCAG	1 cut(s)	799
BspOI	GCTAGC	1 cut(s)	642
BspTI	CTTAAG	1 cut(s)	203
BspTNI	GGTCTC	1 cut(s)	426
BssMI	GATC	1 cut(s)	481
BssSI	CACGAG	2 cut(s)	66, 603
Bst2BI	CACGAG	2 cut(s)	66, 603
Bst4CI	ACNGT	1 cut(s)	437
Bst6I	CTCTTC	1 cut(s)	724
BstAFI	CTTAAG	1 cut(s)	203
BstAPI	GCANNNNNTGC	1 cut(s)	608
BstC8I	GCNNGC	1 cut(s)	640
BstDEI	CTNAG	1 cut(s)	380
BstF5I	GGATG	2 cut(s)	373, 535
BstH2I	RGCGCY	1 cut(s)	95
BstHHI	GCGC	1 cut(s)	94
BstKTI	GATC	1 cut(s)	484
BstMAI	GTCTC	4 cut(s)	231, 426, 624, 677
BstMBI	GATC	1 cut(s)	481
BstMWI	GCNNNNNNNGC	3 cut(s)	608, 648, 800
BstNSI	RCATGY	2 cut(s)	274, 716
BstSFI	CTRYAG	1 cut(s)	795
BstV1I	GCAGC	3 cut(s)	781, 787, 809
BstV2I	GAAGAC	1 cut(s)	242
BstX2I	RGATCY	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	481
BtrI	CACGTC	1 cut(s)	664
BtsCI	GGATG	2 cut(s)	373, 535
Cac8I	GCNNGC	1 cut(s)	640
CciI	TCATGA	1 cut(s)	702
CfoI	GCGC	1 cut(s)	94
Cfr13I	GGNCC	2 cut(s)	60, 461
Csp6I	GTAC	2 cut(s)	151, 698
CviAII	CATG	6 cut(s)	271, 297, 305, 634, 703, 713
CviQI	GTAC	2 cut(s)	151, 698
DdeI	CTNAG	1 cut(s)	380
DpnI	GATC	1 cut(s)	483
DpnII	GATC	1 cut(s)	481
Eam1104I	CTCTTC	1 cut(s)	724
EarI	CTCTTC	1 cut(s)	724
Eco31I	GGTCTC	1 cut(s)	426
Eco47I	GGWCC	2 cut(s)	60, 461
Eco57I	CTGAAG	3 cut(s)	124, 477, 489
FaeI	CATG	6 cut(s)	274, 300, 308, 637, 706, 716
FatI	CATG	6 cut(s)	270, 296, 304, 633, 702, 712
Fnu4HI	GCNGC	3 cut(s)	795, 798, 801
FokI	GGATG	2 cut(s)	380, 542
Fsp4HI	GCNGC	3 cut(s)	795, 798, 801
FspBI	CTAG	3 cut(s)	83, 591, 639
GlaI	GCGC	1 cut(s)	93
GluI	GCNGC	3 cut(s)	795, 798, 801
HaeII	RGCGCY	1 cut(s)	95
HhaI	GCGC	1 cut(s)	94
Hin1II	CATG	6 cut(s)	274, 300, 308, 637, 706, 716
Hin6I	GCGC	1 cut(s)	92
HinP1I	GCGC	1 cut(s)	92
HincII	GTYRAC	2 cut(s)	130, 745
HindII	GTYRAC	2 cut(s)	130, 745
HindIII	AAGCTT	1 cut(s)	737
HinfI	GANTC	2 cut(s)	224, 818
HphI	GGTGA	1 cut(s)	824
Hpy166II	GTNNAC	4 cut(s)	130, 161, 661, 745
Hpy188I	TCNGA	1 cut(s)	724
Hpy188III	TCNNGA	3 cut(s)	68, 703, 848
Hpy8I	GTNNAC	4 cut(s)	130, 161, 661, 745
HpyAV	CCTTC	5 cut(s)	118, 452, 555, 588, 758
HpyCH4III	ACNGT	1 cut(s)	437
HpyCH4IV	ACGT	2 cut(s)	663, 855
HpyCH4V	TGCA	7 cut(s)	181, 440, 569, 674, 691, 797, 803
HpyF10VI	GCNNNNNNNGC	3 cut(s)	608, 648, 800
HpyF3I	CTNAG	1 cut(s)	380
HpySE526I	ACGT	2 cut(s)	663, 855
Hsp92II	CATG	6 cut(s)	274, 300, 308, 637, 706, 716
HspAI	GCGC	1 cut(s)	92
Kzo9I	GATC	1 cut(s)	481
LmnI	GCTCC	2 cut(s)	452, 656
LpnPI	CCDG	6 cut(s)	51, 127, 132, 477, 677, 861
Lsp1109I	GCAGC	3 cut(s)	781, 787, 809
LweI	GCATC	1 cut(s)	598
MaeI	CTAG	3 cut(s)	83, 591, 639
MaeII	ACGT	2 cut(s)	663, 855
MaeIII	GTNAC	3 cut(s)	553, 664, 715
MalI	GATC	1 cut(s)	483
MboI	GATC	1 cut(s)	481
MboII	GAAGA	7 cut(s)	39, 247, 256, 320, 491, 527, 741
MfeI	CAATTG	1 cut(s)	55
MflI	RGATCY	1 cut(s)	481
MhlI	GDGCHC	1 cut(s)	604
MluCI	AATT	8 cut(s)	13, 55, 193, 540, 562, 804, 825, 841
MlyI	GAGTC	2 cut(s)	233, 812
MnlI	CCTC	3 cut(s)	75, 82, 725
MroXI	GAANNNNTTC	1 cut(s)	392
MseI	TTAA	2 cut(s)	204, 354
MslI	CAYNNNNRTG	1 cut(s)	366
MspA1I	CMGCKG	2 cut(s)	467, 800
MspCI	CTTAAG	1 cut(s)	203
MunI	CAATTG	1 cut(s)	55
MwoI	GCNNNNNNNGC	3 cut(s)	608, 648, 800
NdeII	GATC	1 cut(s)	481
NheI	GCTAGC	1 cut(s)	638
NlaIII	CATG	6 cut(s)	274, 300, 308, 637, 706, 716
NlaIV	GGNNCC	2 cut(s)	62, 302
NmuCI	GTSAC	1 cut(s)	664
NspI	RCATGY	2 cut(s)	274, 716
PagI	TCATGA	1 cut(s)	702
PdmI	GAANNNNTTC	1 cut(s)	392
PflMI	CCANNNNNTGG	1 cut(s)	197
PkrI	GCNGC	3 cut(s)	796, 799, 802
PleI	GAGTC	2 cut(s)	232, 812
PpsI	GAGTC	2 cut(s)	232, 812
PspN4I	GGNNCC	2 cut(s)	62, 302
PspPI	GGNCC	2 cut(s)	60, 461
PstI	CTGCAG	1 cut(s)	799
PsuI	RGATCY	1 cut(s)	481
PvuII	CAGCTG	2 cut(s)	467, 800
RsaI	GTAC	2 cut(s)	152, 699
RsaNI	GTAC	2 cut(s)	151, 698
RseI	CAYNNNNRTG	1 cut(s)	366
SaqAI	TTAA	2 cut(s)	204, 354
SatI	GCNGC	3 cut(s)	795, 798, 801
Sau3AI	GATC	1 cut(s)	481
Sau96I	GGNCC	2 cut(s)	60, 461
ScaI	AGTACT	1 cut(s)	699
SchI	GAGTC	2 cut(s)	233, 812
SduI	GDGCHC	1 cut(s)	604
SfaNI	GCATC	1 cut(s)	598
SfcI	CTRYAG	1 cut(s)	795
SinI	GGWCC	2 cut(s)	60, 461
SmiMI	CAYNNNNRTG	1 cut(s)	366
SmlI	CTYRAG	2 cut(s)	203, 283
SmoI	CTYRAG	2 cut(s)	203, 283
Sse9I	AATT	8 cut(s)	13, 55, 193, 540, 562, 804, 825, 841
SspMI	CTAG	3 cut(s)	83, 591, 639
TaaI	ACNGT	1 cut(s)	437
TaiI	ACGT	2 cut(s)	666, 858
TaqI	TCGA	2 cut(s)	586, 762
TasI	AATT	8 cut(s)	13, 55, 193, 540, 562, 804, 825, 841
TatI	WGTACW	1 cut(s)	697
Tru1I	TTAA	2 cut(s)	204, 354
Tru9I	TTAA	2 cut(s)	204, 354
TseFI	GTSAC	1 cut(s)	664
TseI	GCWGC	3 cut(s)	794, 797, 800
Tsp45I	GTSAC	1 cut(s)	664
Van91I	CCANNNNNTGG	1 cut(s)	197
Vha464I	CTTAAG	1 cut(s)	203
VpaK11BI	GGWCC	2 cut(s)	60, 461
XapI	RAATTY	1 cut(s)	13
XceI	RCATGY	2 cut(s)	274, 716
XcmI	CCANNNNNNNNNTGG	2 cut(s)	54, 676
XmnI	GAANNNNTTC	1 cut(s)	392
XspI	CTAG	3 cut(s)	83, 591, 639
ZrmI	AGTACT	1 cut(s)	699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.