Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021290.1

Orthogroup ID

OG0004789

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 4519

Gene Structure 4519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021290.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 802 bp

gaccctagctgtgcattttaccgatcctttccatgtgagcacacgagttgcagataaatgcaatgatggaactttgcttctacaggtgattttacactctgaagtgaaagccacattgacgatttatgatgcttggcttgatcttcaagatggatttgttaatactggacaaagtgatgggagaccaacttctgcctactttccactcgttgtttctccaaattctagagcaggaatattattcaatgaagctaaggttgttcaatcagatagtatactaaatattagatatggaatttctggtgatagaacagctggagcacacccacctgtggcttttgggcctgagggtgctggacaggatctgattttcaggagtgctcttgttttgcaaaggcctgtgcttgatccagtcctggccgttggttttcttcctctcccttctagtggccttagggttggccagctagttaccatgaaatggagggttgaaagattaaaggattttgaagagaatgaactttcccataacaatgatgaggtgttatatgaagtcaatgcaaacactgaaagttggatggttgctgggaggaaaagagggcatgtctctctctctgcaaagcaaggttcaaggatagagatttcaatactatgtgtgcctctggtggcgggatacgttcgtccccctcaacttggtttgccaaatgttgatgaatcaaatataagttgcaatcctgcagggcctcatttggtttgtgtcttgcctccaactttgagttcgtctttctgcattcctgcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006891 GO:0007049 GO:0008150 GO:0009987 GO:0012505 GO:0016043 GO:0016192 GO:0016197 GO:0016482 GO:0022402 GO:0022607 GO:0030008 GO:0031410 GO:0031982 GO:0031984 GO:0032506 GO:0032991 GO:0034498 GO:0042147 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051301 GO:0051641 GO:0051649 GO:0061640 GO:0071840 GO:0097708 GO:0098791 GO:0099023 GO:1902410 GO:1903047 GO:1990071

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Foie-gras_1 TRAPPC10

Protein Analysis

266

Amino Acids

28.77

Weight (kDa)

5.78

Isoelectric Point (pI)

51.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54440 AT5G54440 AT5G54440
fragaria_vesca	FvH4_3g20750 FvH4_3g20750 FvH4_3g20750 FvH4_3g20750
malus_domestica	MD03G1222200.v1.1 MD11G1239600.v1.1
prunus_persica	Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1
pyrus_communis	pycom03g17080 pycom11g21130
rosa_chinensis	RchiOBHm_Chr5g0034971
rosa_laevigata	RLG00000033586 RLG00000033589
rosa_multiflora	Rmu_co8343959.1_g000001 Rmu_sc0000879.1_g000039 Rmu_sc0021290.1_g000001
rosa_roxburghii	Rroxscaffold_1G00045410
rosa_rugosa	Rorug05G0149100 Rorug05G0149200 Rorug05G0149300
rosa_samantha	Rh5AG242200 Rh5BG241800 Rh5CG273300 Rh5DG250400
rosa_wichuraiana	Rw5G022120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	481
AccI	GTMKAC	1 cut(s)	275
AciI	CCGC	1 cut(s)	669
AclWI	GGATC	3 cut(s)	18, 370, 402
AcoI	YGGCCR	2 cut(s)	418, 461
AcsI	RAATTY	2 cut(s)	221, 295
AcuI	CTGAAG	1 cut(s)	121
AfiI	CCNNNNNNNGG	4 cut(s)	332, 447, 481, 693
AgsI	TTSAA	7 cut(s)	147, 245, 264, 492, 510, 631, 646
AjnI	CCWGG	1 cut(s)	415
AjuI	GAANNNNNNNTTGG	2 cut(s)	761, 793
AluBI	AGCT	4 cut(s)	9, 252, 315, 467
AluI	AGCT	4 cut(s)	9, 252, 315, 467
Alw21I	GWGCWC	3 cut(s)	42, 323, 383
Alw26I	GTCTC	2 cut(s)	176, 611
AlwI	GGATC	3 cut(s)	18, 370, 402
AlwNI	CAGNNNCTG	1 cut(s)	365
AoxI	GGCC	6 cut(s)	342, 396, 418, 449, 461, 741
ApoI	RAATTY	2 cut(s)	221, 295
AspS9I	GGNCC	2 cut(s)	342, 741
AsuHPI	GGTGA	2 cut(s)	98, 315
AxyI	CCTNAGG	2 cut(s)	346, 453
BaeI	ACNNNNGTAYC	2 cut(s)	665, 698
BalI	TGGCCA	1 cut(s)	463
BauI	CACGAG	1 cut(s)	43
Bbv12I	GWGCWC	3 cut(s)	42, 323, 383
BccI	CCATC	4 cut(s)	60, 144, 171, 572
BceAI	ACGGC	1 cut(s)	405
BciT130I	CCWGG	1 cut(s)	417
BciVI	GTATCC	1 cut(s)	666
BcoDI	GTCTC	2 cut(s)	176, 611
BfaI	CTAG	4 cut(s)	6, 226, 445, 468
BfmI	CTRYAG	2 cut(s)	81, 736
BfuI	GTATCC	1 cut(s)	666
Bme1390I	CCNGG	1 cut(s)	417
BmgT120I	GGNCC	2 cut(s)	342, 741
BmrFI	CCNGG	1 cut(s)	417
BmsI	GCATC	1 cut(s)	119
BpmI	CTGGAG	1 cut(s)	337
Bpu10I	CCTNAGC	1 cut(s)	253
BsaI	GGTCTC	1 cut(s)	176
Bsc4I	CCNNNNNNNGG	4 cut(s)	332, 447, 481, 693
Bse1I	ACTGG	2 cut(s)	170, 411
Bse21I	CCTNAGG	2 cut(s)	346, 453
Bse3DI	GCAATG	1 cut(s)	68
BseBI	CCWGG	1 cut(s)	417
BseGI	GGATG	1 cut(s)	583
BseLI	CCNNNNNNNGG	4 cut(s)	332, 447, 481, 693
BseMI	GCAATG	1 cut(s)	68
BseMII	CTCAG	1 cut(s)	337
BseNI	ACTGG	2 cut(s)	170, 411
BseYI	CCCAGC	1 cut(s)	585
BshFI	GGCC	6 cut(s)	344, 398, 420, 451, 463, 743
BsiHKAI	GWGCWC	3 cut(s)	42, 323, 383
BslFI	GGGAC	1 cut(s)	667
BslI	CCNNNNNNNGG	4 cut(s)	332, 447, 481, 693
BsmAI	GTCTC	2 cut(s)	176, 611
BsmFI	GGGAC	1 cut(s)	667
BsmI	GAATGC	1 cut(s)	790
BsnI	GGCC	6 cut(s)	344, 398, 420, 451, 463, 743
Bso31I	GGTCTC	1 cut(s)	176
Bsp1286I	GDGCHC	3 cut(s)	42, 323, 383
Bsp143I	GATC	4 cut(s)	23, 140, 362, 407
BspACI	CCGC	1 cut(s)	669
BspANI	GGCC	6 cut(s)	344, 398, 420, 451, 463, 743
BspCNI	CTCAG	1 cut(s)	338
BspMAI	CTGCAG	1 cut(s)	740
BspPI	GGATC	3 cut(s)	18, 370, 402
BspTNI	GGTCTC	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	68
BsrI	ACTGG	2 cut(s)	170, 411
BssMI	GATC	4 cut(s)	23, 140, 362, 407
BssNAI	GTATAC	1 cut(s)	276
BssSI	CACGAG	1 cut(s)	43
Bst1107I	GTATAC	1 cut(s)	276
Bst2BI	CACGAG	1 cut(s)	43
Bst2UI	CCWGG	1 cut(s)	417
Bst6I	CTCTTC	1 cut(s)	505
BstC8I	GCNNGC	1 cut(s)	465
BstDEI	CTNAG	3 cut(s)	253, 346, 453
BstF5I	GGATG	1 cut(s)	583
BstKTI	GATC	4 cut(s)	26, 143, 365, 410
BstMAI	GTCTC	2 cut(s)	176, 611
BstMBI	GATC	4 cut(s)	23, 140, 362, 407
BstNI	CCWGG	1 cut(s)	417
BstNSI	RCATGY	1 cut(s)	606
BstSCI	CCNGG	1 cut(s)	415
BstSFI	CTRYAG	2 cut(s)	81, 736
BstX2I	RGATCY	1 cut(s)	362
BstYI	RGATCY	1 cut(s)	362
BstZ17I	GTATAC	1 cut(s)	276
Bsu36I	CCTNAGG	2 cut(s)	346, 453
BsuI	GTATCC	1 cut(s)	666
BsuRI	GGCC	6 cut(s)	344, 398, 420, 451, 463, 743
BtsCI	GGATG	1 cut(s)	583
BtsIMutI	CAGTG	1 cut(s)	565
Cac8I	GCNNGC	1 cut(s)	465
CaiI	CAGNNNCTG	1 cut(s)	365
Cfr13I	GGNCC	2 cut(s)	342, 741
CviAII	CATG	4 cut(s)	33, 476, 603, 799
DdeI	CTNAG	3 cut(s)	253, 346, 453
DpnI	GATC	4 cut(s)	25, 142, 364, 409
DpnII	GATC	4 cut(s)	23, 140, 362, 407
EaeI	YGGCCR	2 cut(s)	418, 461
Eam1104I	CTCTTC	1 cut(s)	505
EarI	CTCTTC	1 cut(s)	505
Eco147I	AGGCCT	1 cut(s)	398
Eco31I	GGTCTC	1 cut(s)	176
Eco57I	CTGAAG	1 cut(s)	121
Eco81I	CCTNAGG	2 cut(s)	346, 453
EcoO109I	RGGNCCY	1 cut(s)	741
EcoRII	CCWGG	1 cut(s)	415
FaeI	CATG	4 cut(s)	36, 479, 606, 802
FaqI	GGGAC	1 cut(s)	667
FatI	CATG	4 cut(s)	32, 475, 602, 798
FauI	CCCGC	1 cut(s)	662
FblI	GTMKAC	1 cut(s)	275
FokI	GGATG	1 cut(s)	590
FspBI	CTAG	4 cut(s)	6, 226, 445, 468
GsaI	CCCAGC	1 cut(s)	589
GsuI	CTGGAG	1 cut(s)	337
HaeIII	GGCC	6 cut(s)	344, 398, 420, 451, 463, 743
Hin1II	CATG	4 cut(s)	36, 479, 606, 802
HinfI	GANTC	1 cut(s)	714
HphI	GGTGA	2 cut(s)	98, 315
Hpy166II	GTNNAC	1 cut(s)	276
Hpy188I	TCNGA	3 cut(s)	101, 269, 367
Hpy188III	TCNNGA	3 cut(s)	147, 226, 374
Hpy8I	GTNNAC	1 cut(s)	276
HpyAV	CCTTC	1 cut(s)	451
HpyCH4IV	ACGT	1 cut(s)	676
HpyF3I	CTNAG	3 cut(s)	253, 346, 453
HpySE526I	ACGT	1 cut(s)	676
Hsp92II	CATG	4 cut(s)	36, 479, 606, 802
Kzo9I	GATC	4 cut(s)	23, 140, 362, 407
LmnI	GCTCC	1 cut(s)	318
LweI	GCATC	1 cut(s)	119
MaeI	CTAG	4 cut(s)	6, 226, 445, 468
MaeII	ACGT	1 cut(s)	676
MaeIII	GTNAC	1 cut(s)	470
MalI	GATC	4 cut(s)	25, 142, 364, 409
MboI	GATC	4 cut(s)	23, 140, 362, 407
MboII	GAAGA	3 cut(s)	135, 423, 522
MflI	RGATCY	1 cut(s)	362
MhlI	GDGCHC	3 cut(s)	42, 323, 383
MlsI	TGGCCA	1 cut(s)	463
MluCI	AATT	2 cut(s)	221, 295
MluNI	TGGCCA	1 cut(s)	463
MmeI	TCCRAC	2 cut(s)	555, 792
Mox20I	TGGCCA	1 cut(s)	463
MscI	TGGCCA	1 cut(s)	463
MseI	TTAA	2 cut(s)	160, 498
MslI	CAYNNNNRTG	1 cut(s)	532
Msp20I	TGGCCA	1 cut(s)	463
MspA1I	CMGCKG	1 cut(s)	315
MspR9I	CCNGG	1 cut(s)	417
Mva1269I	GAATGC	1 cut(s)	790
MvaI	CCWGG	1 cut(s)	417
NdeII	GATC	4 cut(s)	23, 140, 362, 407
NlaIII	CATG	4 cut(s)	36, 479, 606, 802
NspI	RCATGY	1 cut(s)	606
PceI	AGGCCT	1 cut(s)	398
PctI	GAATGC	1 cut(s)	790
PfeI	GAWTC	1 cut(s)	714
PflMI	CCANNNNNTGG	1 cut(s)	481
Psp6I	CCWGG	1 cut(s)	415
PspFI	CCCAGC	1 cut(s)	585
PspGI	CCWGG	1 cut(s)	415
PspPI	GGNCC	2 cut(s)	342, 741
PstI	CTGCAG	1 cut(s)	740
PstNI	CAGNNNCTG	1 cut(s)	365
PsuI	RGATCY	1 cut(s)	362
PvuII	CAGCTG	1 cut(s)	315
RseI	CAYNNNNRTG	1 cut(s)	532
SaqAI	TTAA	2 cut(s)	160, 498
Sau3AI	GATC	4 cut(s)	23, 140, 362, 407
Sau96I	GGNCC	2 cut(s)	342, 741
SbfI	CCTGCAGG	1 cut(s)	740
ScrFI	CCNGG	1 cut(s)	417
SdaI	CCTGCAGG	1 cut(s)	740
SduI	GDGCHC	3 cut(s)	42, 323, 383
SfaNI	GCATC	1 cut(s)	119
SfcI	CTRYAG	2 cut(s)	81, 736
SmiMI	CAYNNNNRTG	1 cut(s)	532
Sse8387I	CCTGCAGG	1 cut(s)	740
Sse9I	AATT	2 cut(s)	221, 295
SseBI	AGGCCT	1 cut(s)	398
SsiI	CCGC	1 cut(s)	669
SspI	AATATT	2 cut(s)	238, 284
SspMI	CTAG	4 cut(s)	6, 226, 445, 468
StuI	AGGCCT	1 cut(s)	398
StyD4I	CCNGG	1 cut(s)	415
TaiI	ACGT	1 cut(s)	679
TasI	AATT	2 cut(s)	221, 295
TfiI	GAWTC	1 cut(s)	714
Tru1I	TTAA	2 cut(s)	160, 498
Tru9I	TTAA	2 cut(s)	160, 498
TscAI	CASTG	1 cut(s)	572
TspDTI	ATGAA	5 cut(s)	262, 492, 532, 565, 727
TspRI	CASTG	1 cut(s)	572
Van91I	CCANNNNNTGG	1 cut(s)	481
XapI	RAATTY	2 cut(s)	221, 295
XbaI	TCTAGA	1 cut(s)	225
XceI	RCATGY	1 cut(s)	606
XmiI	GTMKAC	1 cut(s)	275
XspI	CTAG	4 cut(s)	6, 226, 445, 468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.