trafficking protein particle complex
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G54440 AT5G54440 AT5G54440 |
| fragaria_vesca | FvH4_3g20750 FvH4_3g20750 FvH4_3g20750 FvH4_3g20750 |
| malus_domestica | MD03G1222200.v1.1 MD11G1239600.v1.1 |
| prunus_persica | Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1 |
| pyrus_communis | pycom03g17080 pycom11g21130 |
| rosa_chinensis | RchiOBHm_Chr5g0034971 |
| rosa_laevigata | RLG00000033586 RLG00000033589 |
| rosa_multiflora | Rmu_co8343959.1_g000001 Rmu_sc0000879.1_g000039 Rmu_sc0021290.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00045410 |
| rosa_rugosa | Rorug05G0149100 Rorug05G0149200 Rorug05G0149300 |
| rosa_samantha | Rh5AG242200 Rh5BG241800 Rh5CG273300 Rh5DG250400 |
| rosa_wichuraiana | Rw5G022120 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 4 cut(s) | 971, 1040, 1083, 2471 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3348 |
| AccI | GTMKAC | 1 cut(s) | 3142 |
| AccII | CGCG | 1 cut(s) | 1504 |
| AccIII | TCCGGA | 1 cut(s) | 824 |
| AciI | CCGC | 5 cut(s) | 275, 1126, 1817, 2264, 3536 |
| AclWI | GGATC | 8 cut(s) | 303, 1695, 2084, 2097, 2743, 2855, 3237, 3269 |
| AcoI | YGGCCR | 3 cut(s) | 3, 3285, 3328 |
| AcuI | CTGAAG | 6 cut(s) | 525, 1257, 2379, 2727, 2958, 3129 |
| AdeI | CACNNNGTG | 1 cut(s) | 713 |
| AfaI | GTAC | 5 cut(s) | 996, 1485, 1507, 1600, 2098 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 940, 3199, 3314, 3348, 3560 |
| AjiI | CACGTC | 1 cut(s) | 572 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 650, 682, 3628, 3660 |
| Alw21I | GWGCWC | 5 cut(s) | 117, 577, 1810, 2879, 3250 |
| Alw26I | GTCTC | 4 cut(s) | 1549, 2337, 3013, 3478 |
| Alw44I | GTGCAC | 1 cut(s) | 573 |
| AlwI | GGATC | 8 cut(s) | 303, 1695, 2084, 2097, 2743, 2855, 3237, 3269 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 892, 1103, 3232 |
| Ama87I | CYCGRG | 1 cut(s) | 3063 |
| Aor13HI | TCCGGA | 1 cut(s) | 824 |
| ApaLI | GTGCAC | 1 cut(s) | 573 |
| AseI | ATTAAT | 1 cut(s) | 2039 |
| AspA2I | CCTAGG | 1 cut(s) | 2396 |
| AspLEI | GCGC | 2 cut(s) | 988, 3190 |
| AsuHPI | GGTGA | 7 cut(s) | 277, 809, 1148, 1832, 2657, 2935, 3182 |
| AsuII | TTCGAA | 1 cut(s) | 876 |
| AsuNHI | GCTAGC | 1 cut(s) | 1303 |
| AvaI | CYCGRG | 1 cut(s) | 3063 |
| AvaII | GGWCC | 3 cut(s) | 277, 2552, 2838 |
| AvrII | CCTAGG | 1 cut(s) | 2396 |
| AxyI | CCTNAGG | 2 cut(s) | 3213, 3320 |
| BaeGI | GKGCMC | 1 cut(s) | 577 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3532, 3565 |
| BalI | TGGCCA | 2 cut(s) | 5, 3330 |
| BamHI | GGATCC | 1 cut(s) | 2089 |
| BanII | GRGCYC | 1 cut(s) | 1538 |
| BarI | GAAGNNNNNNTAC | 6 cut(s) | 693, 725, 1498, 1530, 2668, 2700 |
| BauI | CACGAG | 1 cut(s) | 2880 |
| BbsI | GAAGAC | 4 cut(s) | 528, 1883, 2367, 3104 |
| Bbv12I | GWGCWC | 5 cut(s) | 117, 577, 1810, 2879, 3250 |
| BceAI | ACGGC | 2 cut(s) | 344, 3272 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2708, 2742 |
| BciVI | GTATCC | 3 cut(s) | 391, 950, 3533 |
| BclI | TGATCA | 2 cut(s) | 403, 802 |
| BcoDI | GTCTC | 4 cut(s) | 1549, 2337, 3013, 3478 |
| BfaI | CTAG | 8 cut(s) | 728, 1304, 1778, 2255, 2397, 2843, 3312, 3335 |
| BfmI | CTRYAG | 7 cut(s) | 1325, 1592, 1638, 2445, 2599, 2918, 3603 |
| BfoI | RGCGCY | 1 cut(s) | 989 |
| BfuI | GTATCC | 3 cut(s) | 391, 950, 3533 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2398 |
| BlnI | CCTAGG | 1 cut(s) | 2396 |
| Bme18I | GGWCC | 3 cut(s) | 277, 2552, 2838 |
| BmeT110I | CYCGRG | 1 cut(s) | 3063 |
| BmgBI | CACGTC | 1 cut(s) | 572 |
| BmiI | GGNNCC | 4 cut(s) | 261, 2091, 2751, 2840 |
| BmrI | ACTGGG | 1 cut(s) | 2313 |
| BmsI | GCATC | 9 cut(s) | 196, 558, 818, 1276, 1441, 1455, 1463, 2822, 2956 |
| BmtI | GCTAGC | 1 cut(s) | 1307 |
| BmuI | ACTGGG | 1 cut(s) | 2313 |
| BpiI | GAAGAC | 4 cut(s) | 528, 1883, 2367, 3104 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1366, 1398, 1368, 1400 |
| BpmI | CTGGAG | 3 cut(s) | 1320, 1503, 3204 |
| Bpu10I | CCTNAGC | 3 cut(s) | 2196, 3091, 3120 |
| Bpu14I | TTCGAA | 1 cut(s) | 876 |
| Bsa29I | ATCGAT | 1 cut(s) | 1699 |
| BsaAI | YACGTR | 2 cut(s) | 713, 998 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2088 |
| BsaI | GGTCTC | 2 cut(s) | 2337, 3013 |
| BsaJI | CCNNGG | 6 cut(s) | 326, 384, 793, 1247, 2060, 2396 |
| BsaWI | WCCGGW | 1 cut(s) | 824 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 940, 3199, 3314, 3348, 3560 |
| Bse1I | ACTGG | 8 cut(s) | 626, 766, 2028, 2308, 2402, 2554, 3007, 3278 |
| Bse21I | CCTNAGG | 2 cut(s) | 3213, 3320 |
| Bse3DI | GCAATG | 3 cut(s) | 406, 812, 2905 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2088 |
| BseAI | TCCGGA | 1 cut(s) | 824 |
| BseCI | ATCGAT | 1 cut(s) | 1699 |
| BseDI | CCNNGG | 6 cut(s) | 326, 384, 793, 1247, 2060, 2396 |
| BseGI | GGATG | 7 cut(s) | 211, 391, 595, 1832, 2032, 2779, 3450 |
| BseJI | GATNNNNATC | 1 cut(s) | 2088 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 940, 3199, 3314, 3348, 3560 |
| BseMI | GCAATG | 3 cut(s) | 406, 812, 2905 |
| BseMII | CTCAG | 6 cut(s) | 32, 619, 1249, 1287, 1968, 3204 |
| BseNI | ACTGG | 8 cut(s) | 626, 766, 2028, 2308, 2402, 2554, 3007, 3278 |
| BseRI | GAGGAG | 2 cut(s) | 125, 1658 |
| BseSI | GKGCMC | 1 cut(s) | 577 |
| BseYI | CCCAGC | 1 cut(s) | 3452 |
| Bsh1236I | CGCG | 1 cut(s) | 1504 |
| BshVI | ATCGAT | 1 cut(s) | 1699 |
| BsiHKAI | GWGCWC | 5 cut(s) | 117, 577, 1810, 2879, 3250 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3063 |
| BsiSI | CCGG | 1 cut(s) | 825 |
| BslFI | GGGAC | 2 cut(s) | 788, 3534 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 940, 3199, 3314, 3348, 3560 |
| BsmAI | GTCTC | 4 cut(s) | 1549, 2337, 3013, 3478 |
| BsmFI | GGGAC | 2 cut(s) | 788, 3534 |
| BsmI | GAATGC | 2 cut(s) | 2173, 3657 |
| Bso31I | GGTCTC | 2 cut(s) | 2337, 3013 |
| BsoBI | CYCGRG | 1 cut(s) | 3063 |
| Bsp119I | TTCGAA | 1 cut(s) | 876 |
| Bsp1286I | GDGCHC | 6 cut(s) | 117, 577, 1538, 1810, 2879, 3250 |
| Bsp13I | TCCGGA | 1 cut(s) | 824 |
| BspACI | CCGC | 5 cut(s) | 275, 1126, 1817, 2264, 3536 |
| BspCNI | CTCAG | 6 cut(s) | 31, 618, 1248, 1288, 1969, 3205 |
| BspDI | ATCGAT | 1 cut(s) | 1699 |
| BspEI | TCCGGA | 1 cut(s) | 824 |
| BspFNI | CGCG | 1 cut(s) | 1504 |
| BspHI | TCATGA | 1 cut(s) | 1167 |
| BspLI | GGNNCC | 4 cut(s) | 261, 2091, 2751, 2840 |
| BspMAI | CTGCAG | 3 cut(s) | 1596, 2449, 3607 |
| BspOI | GCTAGC | 1 cut(s) | 1307 |
| BspPI | GGATC | 8 cut(s) | 303, 1695, 2084, 2097, 2743, 2855, 3237, 3269 |
| BspT104I | TTCGAA | 1 cut(s) | 876 |
| BspTNI | GGTCTC | 2 cut(s) | 2337, 3013 |
| BsrDI | GCAATG | 3 cut(s) | 406, 812, 2905 |
| BsrI | ACTGG | 8 cut(s) | 626, 766, 2028, 2308, 2402, 2554, 3007, 3278 |
| BssECI | CCNNGG | 6 cut(s) | 326, 384, 793, 1247, 2060, 2396 |
| BssNAI | GTATAC | 1 cut(s) | 3143 |
| BssSI | CACGAG | 1 cut(s) | 2880 |
| BssT1I | CCWWGG | 3 cut(s) | 384, 1247, 2396 |
| Bst1107I | GTATAC | 1 cut(s) | 3143 |
| Bst2BI | CACGAG | 1 cut(s) | 2880 |
| Bst4CI | ACNGT | 9 cut(s) | 94, 579, 751, 797, 888, 1226, 2248, 2603, 3519 |
| Bst6I | CTCTTC | 4 cut(s) | 461, 1519, 2565, 3372 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2017 |
| BstBAI | YACGTR | 2 cut(s) | 713, 998 |
| BstBI | TTCGAA | 1 cut(s) | 876 |
| BstC8I | GCNNGC | 9 cut(s) | 602, 990, 1048, 1176, 1241, 1260, 1305, 1897, 3332 |
| BstDSI | CCRYGG | 2 cut(s) | 326, 793 |
| BstF5I | GGATG | 7 cut(s) | 211, 391, 595, 1832, 2032, 2779, 3450 |
| BstFNI | CGCG | 1 cut(s) | 1504 |
| BstH2I | RGCGCY | 1 cut(s) | 989 |
| BstHHI | GCGC | 2 cut(s) | 988, 3190 |
| BstMAI | GTCTC | 4 cut(s) | 1549, 2337, 3013, 3478 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 1249, 1337, 1586, 1814, 2017, 2314, 2398 |
| BstNSI | RCATGY | 5 cut(s) | 1054, 1243, 1589, 2000, 3473 |
| BstSFI | CTRYAG | 7 cut(s) | 1325, 1592, 1638, 2445, 2599, 2918, 3603 |
| BstSLI | GKGCMC | 1 cut(s) | 577 |
| BstUI | CGCG | 1 cut(s) | 1504 |
| BstV2I | GAAGAC | 4 cut(s) | 528, 1883, 2367, 3104 |
| BstX2I | RGATCY | 3 cut(s) | 295, 2089, 3229 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 418, 541, 1266 |
| BstYI | RGATCY | 3 cut(s) | 295, 2089, 3229 |
| BstZ17I | GTATAC | 1 cut(s) | 3143 |
| Bsu15I | ATCGAT | 1 cut(s) | 1699 |
| Bsu36I | CCTNAGG | 2 cut(s) | 3213, 3320 |
| BsuI | GTATCC | 3 cut(s) | 391, 950, 3533 |
| BsuTUI | ATCGAT | 1 cut(s) | 1699 |
| BtgI | CCRYGG | 2 cut(s) | 326, 793 |
| BtrI | CACGTC | 1 cut(s) | 572 |
| BtsCI | GGATG | 7 cut(s) | 211, 391, 595, 1832, 2032, 2779, 3450 |
| BtsIMutI | CAGTG | 6 cut(s) | 613, 1231, 2021, 2608, 2751, 3432 |
| Cac8I | GCNNGC | 9 cut(s) | 602, 990, 1048, 1176, 1241, 1260, 1305, 1897, 3332 |
| CaiI | CAGNNNCTG | 3 cut(s) | 892, 1103, 3232 |
| CciI | TCATGA | 1 cut(s) | 1167 |
| CfoI | GCGC | 2 cut(s) | 988, 3190 |
| ClaI | ATCGAT | 1 cut(s) | 1699 |
| CseI | GACGC | 1 cut(s) | 936 |
| CsiI | ACCWGGT | 1 cut(s) | 2275 |
| Csp6I | GTAC | 5 cut(s) | 995, 1484, 1506, 1599, 2097 |
| CviQI | GTAC | 5 cut(s) | 995, 1484, 1506, 1599, 2097 |
| DraI | TTTAAA | 2 cut(s) | 141, 2409 |
| DraIII | CACNNNGTG | 1 cut(s) | 713 |
| EaeI | YGGCCR | 3 cut(s) | 3, 3285, 3328 |
| Eam1104I | CTCTTC | 4 cut(s) | 461, 1519, 2565, 3372 |
| EarI | CTCTTC | 4 cut(s) | 461, 1519, 2565, 3372 |
| Eco130I | CCWWGG | 3 cut(s) | 384, 1247, 2396 |
| Eco147I | AGGCCT | 1 cut(s) | 3265 |
| Eco24I | GRGCYC | 1 cut(s) | 1538 |
| Eco31I | GGTCTC | 2 cut(s) | 2337, 3013 |
| Eco47I | GGWCC | 3 cut(s) | 277, 2552, 2838 |
| Eco57I | CTGAAG | 6 cut(s) | 525, 1257, 2379, 2727, 2958, 3129 |
| Eco81I | CCTNAGG | 2 cut(s) | 3213, 3320 |
| Eco88I | CYCGRG | 1 cut(s) | 3063 |
| EcoO109I | RGGNCCY | 3 cut(s) | 2354, 2838, 3608 |
| EcoRI | GAATTC | 4 cut(s) | 37, 188, 305, 872 |
| EcoT14I | CCWWGG | 3 cut(s) | 384, 1247, 2396 |
| EcoT22I | ATGCAT | 1 cut(s) | 1456 |
| EcoT38I | GRGCYC | 1 cut(s) | 1538 |
| ErhI | CCWWGG | 3 cut(s) | 384, 1247, 2396 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 650, 682, 655, 687, 1125, 1157 |
| FaqI | GGGAC | 2 cut(s) | 788, 3534 |
| FauI | CCCGC | 2 cut(s) | 1810, 3529 |
| FauNDI | CATATG | 3 cut(s) | 265, 1792, 2284 |
| FbaI | TGATCA | 2 cut(s) | 403, 802 |
| FblI | GTMKAC | 1 cut(s) | 3142 |
| FokI | GGATG | 7 cut(s) | 218, 378, 602, 1839, 2039, 2786, 3457 |
| FriOI | GRGCYC | 1 cut(s) | 1538 |
| FspBI | CTAG | 8 cut(s) | 728, 1304, 1778, 2255, 2397, 2843, 3312, 3335 |
| GlaI | GCGC | 2 cut(s) | 987, 3189 |
| GsaI | CCCAGC | 1 cut(s) | 3456 |
| GsuI | CTGGAG | 3 cut(s) | 1320, 1503, 3204 |
| HaeII | RGCGCY | 1 cut(s) | 989 |
| HapII | CCGG | 1 cut(s) | 825 |
| HgaI | GACGC | 1 cut(s) | 936 |
| HhaI | GCGC | 2 cut(s) | 988, 3190 |
| Hin6I | GCGC | 2 cut(s) | 986, 3188 |
| HinP1I | GCGC | 2 cut(s) | 986, 3188 |
| HincII | GTYRAC | 1 cut(s) | 790 |
| HindII | GTYRAC | 1 cut(s) | 790 |
| HindIII | AAGCTT | 3 cut(s) | 664, 973, 1425 |
| HpaII | CCGG | 1 cut(s) | 825 |
| HphI | GGTGA | 7 cut(s) | 277, 809, 1148, 1832, 2657, 2935, 3182 |
| Hpy166II | GTNNAC | 4 cut(s) | 575, 611, 790, 3143 |
| Hpy8I | GTNNAC | 4 cut(s) | 575, 611, 790, 3143 |
| HpyAV | CCTTC | 8 cut(s) | 94, 652, 1082, 1139, 1281, 1817, 2694, 3318 |
| HpyCH4III | ACNGT | 9 cut(s) | 94, 579, 751, 797, 888, 1226, 2248, 2603, 3519 |
| HpyCH4IV | ACGT | 4 cut(s) | 571, 712, 997, 3543 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 1249, 1337, 1586, 1814, 2017, 2314, 2398 |
| HpySE526I | ACGT | 4 cut(s) | 571, 712, 997, 3543 |
| HspAI | GCGC | 2 cut(s) | 986, 3188 |
| Kpn2I | TCCGGA | 1 cut(s) | 824 |
| Ksp22I | TGATCA | 2 cut(s) | 403, 802 |
| LmnI | GCTCC | 8 cut(s) | 112, 235, 259, 464, 1666, 2755, 2810, 3185 |
| LweI | GCATC | 9 cut(s) | 196, 558, 818, 1276, 1441, 1455, 1463, 2822, 2956 |
| MabI | ACCWGGT | 1 cut(s) | 2275 |
| MaeI | CTAG | 8 cut(s) | 728, 1304, 1778, 2255, 2397, 2843, 3312, 3335 |
| MaeII | ACGT | 4 cut(s) | 571, 712, 997, 3543 |
| MaeIII | GTNAC | 5 cut(s) | 283, 2107, 2248, 2574, 3337 |
| MfeI | CAATTG | 1 cut(s) | 1539 |
| MflI | RGATCY | 3 cut(s) | 295, 2089, 3229 |
| MhlI | GDGCHC | 6 cut(s) | 117, 577, 1538, 1810, 2879, 3250 |
| MlsI | TGGCCA | 2 cut(s) | 5, 3330 |
| MluNI | TGGCCA | 2 cut(s) | 5, 3330 |
| MlyI | GAGTC | 2 cut(s) | 854, 2582 |
| MmeI | TCCRAC | 3 cut(s) | 2219, 3422, 3659 |
| Mox20I | TGGCCA | 2 cut(s) | 5, 3330 |
| Mph1103I | ATGCAT | 1 cut(s) | 1456 |
| MroI | TCCGGA | 1 cut(s) | 824 |
| MscI | TGGCCA | 2 cut(s) | 5, 3330 |
| MslI | CAYNNNNRTG | 5 cut(s) | 696, 798, 1202, 2588, 3399 |
| Msp20I | TGGCCA | 2 cut(s) | 5, 3330 |
| MspA1I | CMGCKG | 3 cut(s) | 1103, 1580, 3182 |
| MspI | CCGG | 1 cut(s) | 825 |
| MunI | CAATTG | 1 cut(s) | 1539 |
| Mva1269I | GAATGC | 2 cut(s) | 2173, 3657 |
| MvnI | CGCG | 1 cut(s) | 1504 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 1249, 1337, 1586, 1814, 2017, 2314, 2398 |
| NdeI | CATATG | 3 cut(s) | 265, 1792, 2284 |
| NheI | GCTAGC | 1 cut(s) | 1303 |
| NlaIV | GGNNCC | 4 cut(s) | 261, 2091, 2751, 2840 |
| NmuCI | GTSAC | 3 cut(s) | 283, 2107, 2574 |
| NsiI | ATGCAT | 1 cut(s) | 1456 |
| NspI | RCATGY | 5 cut(s) | 1054, 1243, 1589, 2000, 3473 |
| NspV | TTCGAA | 1 cut(s) | 876 |
| PaeI | GCATGC | 1 cut(s) | 1243 |
| PaeR7I | CTCGAG | 1 cut(s) | 3063 |
| PagI | TCATGA | 1 cut(s) | 1167 |
| PceI | AGGCCT | 1 cut(s) | 3265 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 51 |
| PctI | GAATGC | 2 cut(s) | 2173, 3657 |
| PfeI | GAWTC | 9 cut(s) | 225, 530, 704, 928, 2147, 2325, 2609, 2698, 3581 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3348 |
| PfoI | TCCNGGA | 1 cut(s) | 1519 |
| PleI | GAGTC | 2 cut(s) | 854, 2581 |
| PpsI | GAGTC | 2 cut(s) | 854, 2581 |
| Ppu21I | YACGTR | 2 cut(s) | 713, 998 |
| PpuMI | RGGWCCY | 1 cut(s) | 2838 |
| PshBI | ATTAAT | 1 cut(s) | 2039 |
| PsiI | TTATAA | 4 cut(s) | 971, 1040, 1083, 2471 |
| Psp5II | RGGWCCY | 1 cut(s) | 2838 |
| PspFI | CCCAGC | 1 cut(s) | 3452 |
| PspN4I | GGNNCC | 4 cut(s) | 261, 2091, 2751, 2840 |
| PspPPI | RGGWCCY | 1 cut(s) | 2838 |
| PstI | CTGCAG | 3 cut(s) | 1596, 2449, 3607 |
| PstNI | CAGNNNCTG | 3 cut(s) | 892, 1103, 3232 |
| PsuI | RGATCY | 3 cut(s) | 295, 2089, 3229 |
| PvuII | CAGCTG | 3 cut(s) | 1103, 1580, 3182 |
| RsaI | GTAC | 5 cut(s) | 996, 1485, 1507, 1600, 2098 |
| RsaNI | GTAC | 5 cut(s) | 995, 1484, 1506, 1599, 2097 |
| RseI | CAYNNNNRTG | 5 cut(s) | 696, 798, 1202, 2588, 3399 |
| SbfI | CCTGCAGG | 1 cut(s) | 3607 |
| SchI | GAGTC | 2 cut(s) | 854, 2582 |
| SdaI | CCTGCAGG | 1 cut(s) | 3607 |
| SduI | GDGCHC | 6 cut(s) | 117, 577, 1538, 1810, 2879, 3250 |
| SexAI | ACCWGGT | 1 cut(s) | 2275 |
| SfaNI | GCATC | 9 cut(s) | 196, 558, 818, 1276, 1441, 1455, 1463, 2822, 2956 |
| SfcI | CTRYAG | 7 cut(s) | 1325, 1592, 1638, 2445, 2599, 2918, 3603 |
| Sfr274I | CTCGAG | 1 cut(s) | 3063 |
| SfuI | TTCGAA | 1 cut(s) | 876 |
| SinI | GGWCC | 3 cut(s) | 277, 2552, 2838 |
| SlaI | CTCGAG | 1 cut(s) | 3063 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 696, 798, 1202, 2588, 3399 |
| SmlI | CTYRAG | 1 cut(s) | 3063 |
| SmoI | CTYRAG | 1 cut(s) | 3063 |
| SphI | GCATGC | 1 cut(s) | 1243 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 3607 |
| SseBI | AGGCCT | 1 cut(s) | 3265 |
| SsiI | CCGC | 5 cut(s) | 275, 1126, 1817, 2264, 3536 |
| SspI | AATATT | 3 cut(s) | 1661, 3075, 3151 |
| SspMI | CTAG | 8 cut(s) | 728, 1304, 1778, 2255, 2397, 2843, 3312, 3335 |
| StuI | AGGCCT | 1 cut(s) | 3265 |
| StyI | CCWWGG | 3 cut(s) | 384, 1247, 2396 |
| TaaI | ACNGT | 9 cut(s) | 94, 579, 751, 797, 888, 1226, 2248, 2603, 3519 |
| TaiI | ACGT | 4 cut(s) | 574, 715, 1000, 3546 |
| TaqI | TCGA | 5 cut(s) | 45, 489, 876, 1699, 3064 |
| TatI | WGTACW | 2 cut(s) | 1483, 1598 |
| TfiI | GAWTC | 9 cut(s) | 225, 530, 704, 928, 2147, 2325, 2609, 2698, 3581 |
| TscAI | CASTG | 6 cut(s) | 613, 1231, 2028, 2608, 2751, 3439 |
| TseFI | GTSAC | 3 cut(s) | 283, 2107, 2574 |
| Tsp45I | GTSAC | 3 cut(s) | 283, 2107, 2574 |
| TspGWI | ACGGA | 4 cut(s) | 170, 218, 784, 1045 |
| TspRI | CASTG | 6 cut(s) | 613, 1231, 2028, 2608, 2751, 3439 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3348 |
| VneI | GTGCAC | 1 cut(s) | 573 |
| VpaK11BI | GGWCC | 3 cut(s) | 277, 2552, 2838 |
| VspI | ATTAAT | 1 cut(s) | 2039 |
| XbaI | TCTAGA | 1 cut(s) | 2254 |
| XceI | RCATGY | 5 cut(s) | 1054, 1243, 1589, 2000, 3473 |
| XhoI | CTCGAG | 1 cut(s) | 3063 |
| XmaJI | CCTAGG | 1 cut(s) | 2396 |
| XmiI | GTMKAC | 1 cut(s) | 3142 |
| XspI | CTAG | 8 cut(s) | 728, 1304, 1778, 2255, 2397, 2843, 3312, 3335 |
| Zsp2I | ATGCAT | 1 cut(s) | 1456 |