Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0004789

Physical Location & Seq

Genomic Coordinates Reverse (-)

34815188 .. 34827128

Gene Structure 11941 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1239600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3780 bp

ATGGCGAACTATCTTGCTCAGTTCCAGACGATCAAGAATTCCCTCGATCATCTCGTGATTGCAGTTGAAGATGTGAGCGATTTGTGGCCTACTGTCAAGAATGGGTTTGAGGAACACTTGCCATTCAAAAGAGCTTGCTTAAATAACAAAACCCGTAATCCCGTGTTTGTAGAGAATTTCCCTGCTGAATTCATACTAACCACAGATTCGAGGCTTCGTAGCCGGTTCCCACAAGAGCAATCATTATTTTGGTTTCGAGAGCCATATGCAACTGCGGTCCTCGTCACCTGTGAGGATCTTGATGAGTTCAAGACCATCCTTAAACCACGCCTAAAGTTAATTGTCCAAAATGATGAACGGGAATGGTTTATTGTTTTTGTATCCAAGGCTCACCCGAATAATGATCAAGCCACCAGATTGGCAAATAAAGTATATGCCAAACTTGAAGTTGATTTCAGTTCCAAGAAGAGAGAAAGGTGCTGCAAGTTCGATTTATATTCTCCTGAAGCAAACTTTTGGGAAGACTTGGAATCCAAGATAATGGAGTGCATCAGAAATACATTAGATAGACGTGTACAATTTTATGAGGACGAGATACGCAAGCTCAGTGAACAACGCTTCATGCCAGTTTGGAACTTCTGCAATTTTTTTATTCTGAAGGAAAGCTTGGCTTTTTTGTTTGAGATGGCTCATCTTCATGAAGATTCTTTACGTGAATATGATGAACTAGAAATTTGTTATTTGGAAACAGTTGAAATGACTGGAAAACGGAAGGACTTTGGAGGAGTTGACCATGGTGATGATCAGGCAGCATTGCTCAATTCTGGAAAGAAATCATTGACACAAATTGTTCAAGATGACTCATTTAGAGAATTTGAATTTAGACAGTATCTGTTTGCCTGCCAAGCAAAGCTTTTATTCAAGCTGAATCGCCCGTTTGAAGTTGCATCAAGGGGATACTCATTCATTATAAGCTTCTCAAAGTCTCTGGCTGTACATGAGAGTATTCTACCCTTTTGTATGCGTGAAGTGTGGGTGATAACGGCTTGCATGTCCTTAGTCAATGAAACTGCTTCACATTATAAGGATGGACTTGCAGCACCTGATATAGAAAAAGAATTCTACCGCCTTCAAGGCGACCTTTATTCATTATGCAGGGTTAAGTTCATGAGGCTTGCATATTTAATTGGATATGGGACGAATATAGAAAGGAGTCCTGGAAACAGTGCTTCACTCAGCATGCTTCCCTGGCCCAAGCCTGCGGTTTGGCCCTCAGTTCCACCTGATGCTTCATCTGAGGTGCTGGCCAAAGAAAAGGTAATTCTACAGTCAACTCCATCGTTCAAGCACTTTGGTATTCAGAGAAAACCATTGCCTCTTGAACCTTCTCTACTGTTACGTGAGGCTAATCGGAGGAGAGCTTCCCTTTCTGCCGGGAATGTGGTTGAAATGTTTGATGGTCGCCAAAATTTTATTGACAGTTCAGGTTCAGATGCATCATTTAAGATGCCGTCATTACAAAAAGTGCAAGCAAGTGTTATGGCGCGTACTAACTCTTCACCAGGAATTTCTGAGAGCTCAATTGATCGCCCCATGAGGCTTGCTGAAATTTATGTTGCTGCTGATTATGCTCTGCACAACACAGTTTCTAATCCTGATCTGTGGAAGTCTTTGTCGTCTACAGAAGAGTTTGAGCAAAAATATCTTGAACTAACTAAAGGGGCTGCTGACAATTATCATCGATCCTGGTGGAAAAGACATGGAGTTGTTCTTGATGGAGAAATAGCATCTGTATGTTTTAAGCATGGAAACTATGATCTGGCAGCAAAGTCATATGAAAAGGTTTGTGCACTTTACGCTGGTGAAGGATGGCAGGATTTATTGGCAGAAGTCCTCCCCAATTTAGCAGAGTGTCAGAAAATACTCAATGATCAAGCTGGCTATCTATCATCTTGCGTGAGGTTGCTTTCATTGGATAAAGGCTTGTTTTTGACTAGGGAACGCCAGGCTTTTCAGTCAGAGGTTGTTCGTCTTGCACATGGCGAAATGGAGCAACCAGTGCCCCTAGATGTGTCATCTTTAATTACTTTTTCTGGCAATCCTGGGCCTCCATTAGAATTATGTGATGGAGATCCTGGTACTCTATCAGTAACATTTTGGAGTGGCTTTCCTGATGATATAACCCTTGATTCACTTAGTCTCACATTGAATGCGATATTTAATACTGATGAGGTTGCTAAGGCATTAATGAGCTCTACTGCAATTGTATTAAAGCCTGGTCGGAATACCGTTACCCTGGATTTACCCCCCCAGAAACCAGGTTCATATGTTTTGGGGGTTCTCACTGGGAAAATTGGGCAATTAAGATTCAGATCTCATAGCTTTTCCAAGGGTGGCCCTGAAGACAGCGAGGATTTCATGAGTTATGAAAAGCCTCCTAGACCTATCTTGAAGGTATTCAAACCAAGACCTCTGGTTGATCTTGTTGCAGCTGTTTCCGCTGCTCTGCTGATAAATGAACCTCAGTGGGTGGGCATTATTGTAAGACCCATTAACTACTCTCTCAAAGGTGCTATCTTGTATGTTGATACTGGACCTGGTCTTAAAATTGAAGATTCACATTTCATTGAGATGGAGAGCTACGCTGATGCATCAAAGAGTTCAGTTGGTGTGGCTGACTGTAATGGCACTCTAAAGGATGGTTCTTTGGCTATCGATAAAAATTTTGAGCAGTTGCCTCTGTTTGATGATAGAGTAGAGTTTCCACATTGGGCAAGCAATTTGACGTCTATTTTATGGATTCCAGTTCGTGCTATCAGTGAAAAGCTTGCTGTAGGATCATCTTCAGTGGCTCCCCAGAGACAGAGCATTGTGGATGGAATGAGGATGATAGCGCTCAAACTTGAATTTGGTGCATCTCACAATCAGATATTTGAGAGGACCCTAGCAGTGCATTTTACAGATCCTTTCCATGTGAGCACACGAGTTGCAGATAAATGCAATGATGGTACTTTGCTTCTCCAGGTCAGTCTACACTCTGAAGTGAAAGCCACGGTGACCATCTTTGATGCTTGGCTTGATCTTCAAGATGGATTTGTTAATACTGGACAAGGTGATGGGAGACCGACTTCAGCCTACTTTCCACTAGTTGTTTCTCCAAATTCTAGAGCAGGAATGCTATTCAGTATATGCTTAGGGAAGACTAATGTTGAAGATGAAGCTAAGGCTTTTCAGTCAGAGAGTATATTAAACATTAGATATGGAATTTCTGGTGATAGAACCAGTGGAGCGCACCCACCTGTGTTTGCAGAATCTTCTGGGTCTGAGGGGGCTAGACGGGACTTAATTTTCAGAAGCACTCTTGCTTTGCAAAGGCCTGTGCTTGATCCAGTCCTGGCTGTTGGTTTTCTTCCTCTCTCTTCTGGTGGCCTTAGGGTTGGCCAGCTAGTTACTATGAAATGGAGGGTTGAAAGATTGAAGGATTTTGAGGAAAATGAAGTTTCTCCTAACAATGATGAGGTGTTATATGAAGTCGGTGCAAATACTGAGAATTGGATGATTGCTGGGAGGAAAAGAGGGCATGTTTCTCTCTCGTCAAAGCAAGGTTCAAGGATAGAAATCTCAATATTATGTGTGCCTCTAGTGGCGGGTTATGTTCGTCCCCCACAACTTGGTCTGCCAGATGTTGGTGAATCGAATATAAGTTGCAATCCTGCTGGGCCTCATCTGGTTTGTGTCTTGCCTCCGATTCTGAGCTCCTCCTTTTGCATTCCGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006891 GO:0007049 GO:0008150 GO:0009987 GO:0012505 GO:0016043 GO:0016192 GO:0016197 GO:0016482 GO:0022402 GO:0022607 GO:0030008 GO:0031410 GO:0031982 GO:0031984 GO:0032506 GO:0032991 GO:0034498 GO:0042147 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051301 GO:0051641 GO:0051649 GO:0061640 GO:0071840 GO:0097708 GO:0098791 GO:0099023 GO:1902410 GO:1903047 GO:1990071

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Foie-gras_1 TRAPPC10

Protein Analysis

1260

Amino Acids

140.8

Weight (kDa)

5.66

Isoelectric Point (pI)

44.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAPPC10_1st	PF23036	17 - 316	2.7e-51	Trafficking protein particle complex subunit 10-like, N-terminal
TRAPPC10	PF12584	1144 - 1223	8.4e-10	Trafficking protein particle complex subunit 10, TRAPPC10

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54440 AT5G54440 AT5G54440
fragaria_vesca	FvH4_3g20750 FvH4_3g20750 FvH4_3g20750 FvH4_3g20750
malus_domestica	MD03G1222200.v1.1 MD11G1239600.v1.1
prunus_persica	Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1
pyrus_communis	pycom03g17080 pycom11g21130
rosa_chinensis	RchiOBHm_Chr5g0034971
rosa_laevigata	RLG00000033586 RLG00000033589
rosa_multiflora	Rmu_co8343959.1_g000001 Rmu_sc0000879.1_g000039 Rmu_sc0021290.1_g000001
rosa_roxburghii	Rroxscaffold_1G00045410
rosa_rugosa	Rorug05G0149100 Rorug05G0149200 Rorug05G0149300
rosa_samantha	Rh5AG242200 Rh5BG241800 Rh5CG273300 Rh5DG250400
rosa_wichuraiana	Rw5G022120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	971, 1083
AatII	GACGTC	1 cut(s)	2789
AccB7I	CCANNNNNTGG	2 cut(s)	3671, 3686
AccI	GTMKAC	2 cut(s)	1679, 3031
AccII	CGCG	1 cut(s)	1546
AciI	CCGC	5 cut(s)	275, 1126, 1262, 2499, 3647
AclWI	GGATC	6 cut(s)	303, 1737, 2126, 2845, 2957, 3380
AcoI	YGGCCR	2 cut(s)	1305, 3439
AcuI	CTGAAG	6 cut(s)	525, 677, 2421, 2829, 3060, 3114
AcyI	GRCGYC	1 cut(s)	2786
AfaI	GTAC	5 cut(s)	576, 996, 1549, 2140, 3010
AfeI	AGCGCT	1 cut(s)	2895
AfiI	CCNNNNNNNGG	2 cut(s)	3671, 3686
AflIII	ACRYGT	1 cut(s)	571
AhlI	ACTAGT	1 cut(s)	3145
AjiI	CACGTC	1 cut(s)	572
AjuI	GAANNNNNNNTTGG	2 cut(s)	650, 682
Alw21I	GWGCWC	5 cut(s)	1580, 1852, 2255, 2981, 3758
Alw26I	GTCTC	4 cut(s)	990, 2204, 2854, 3115
Alw44I	GTGCAC	1 cut(s)	1848
AlwI	GGATC	6 cut(s)	303, 1737, 2126, 2845, 2957, 3380
AlwNI	CAGNNNCTG	2 cut(s)	892, 1103
Aor51HI	AGCGCT	1 cut(s)	2895
ApaLI	GTGCAC	1 cut(s)	1848
ApeKI	GCWGC	8 cut(s)	480, 809, 1097, 1619, 1724, 1823, 2489, 2501
AseI	ATTAAT	1 cut(s)	2246
Asp700I	GAANNNNTTC	1 cut(s)	2456
AspLEI	GCGC	3 cut(s)	1546, 2896, 3292
AspS9I	GGNCC	8 cut(s)	277, 1251, 1269, 2105, 2396, 2594, 2940, 3719
AsuC2I	CCSGG	1 cut(s)	1435
AvaII	GGWCC	3 cut(s)	277, 2594, 2940
AxyI	CCTNAGG	1 cut(s)	3431
BaeGI	GKGCMC	2 cut(s)	1852, 2064
BalI	TGGCCA	2 cut(s)	1307, 3441
BanII	GRGCYC	3 cut(s)	1580, 2255, 3758
BarI	GAAGNNNNNNTAC	4 cut(s)	693, 725, 1540, 1572
BauI	CACGAG	2 cut(s)	53, 2982
BbsI	GAAGAC	3 cut(s)	528, 2409, 3206
Bbv12I	GWGCWC	5 cut(s)	1580, 1852, 2255, 2981, 3758
BbvI	GCAGC	8 cut(s)	467, 821, 1109, 1606, 1711, 1835, 2488, 2501
BceAI	ACGGC	2 cut(s)	1059, 1495
BciVI	GTATCC	2 cut(s)	391, 950
BclI	TGATCA	3 cut(s)	403, 802, 1930
BcnI	CCSGG	1 cut(s)	1435
BcoDI	GTCTC	4 cut(s)	990, 2204, 2854, 3115
BcuI	ACTAGT	1 cut(s)	3145
BfmI	CTRYAG	3 cut(s)	1325, 1680, 2832
BfoI	RGCGCY	1 cut(s)	2897
BfuI	GTATCC	2 cut(s)	391, 950
BglI	GCCNNNNNGGC	1 cut(s)	1134
BglII	AGATCT	1 cut(s)	2372
BisI	GCNGC	8 cut(s)	481, 810, 1098, 1620, 1725, 1824, 2490, 2502
BlsI	GCNGC	8 cut(s)	482, 811, 1099, 1621, 1726, 1825, 2491, 2503
Bme18I	GGWCC	3 cut(s)	277, 2594, 2940
BmgBI	CACGTC	1 cut(s)	572
BmgT120I	GGNCC	8 cut(s)	277, 1251, 1269, 2105, 2396, 2594, 2940, 3719
BmiI	GGNNCC	3 cut(s)	227, 2853, 2942
BmrI	ACTGGG	1 cut(s)	2355
BmuI	ACTGGG	1 cut(s)	2355
BpiI	GAAGAC	3 cut(s)	528, 2409, 3206
BpmI	CTGGAG	1 cut(s)	3005
Bpu10I	CCTNAGC	3 cut(s)	2238, 3193, 3222
BpuMI	CCSGG	1 cut(s)	1435
Bsa29I	ATCGAT	2 cut(s)	1741, 2715
BsaAI	YACGTR	2 cut(s)	713, 1400
BsaBI	GATNNNNATC	3 cut(s)	2130, 2371, 3617
BsaHI	GRCGYC	1 cut(s)	2786
BsaI	GGTCTC	1 cut(s)	3115
BsaJI	CCNNGG	7 cut(s)	384, 793, 1247, 2102, 2295, 2388, 3051
Bsc4I	CCNNNNNNNGG	2 cut(s)	3671, 3686
Bse118I	RCCGGY	1 cut(s)	222
Bse1I	ACTGG	9 cut(s)	626, 766, 2057, 2350, 2596, 2804, 3109, 3282, 3389
Bse21I	CCTNAGG	1 cut(s)	3431
Bse3DI	GCAATG	3 cut(s)	812, 1370, 3007
Bse8I	GATNNNNATC	3 cut(s)	2130, 2371, 3617
BseCI	ATCGAT	2 cut(s)	1741, 2715
BseDI	CCNNGG	7 cut(s)	384, 793, 1247, 2102, 2295, 2388, 3051
BseGI	GGATG	7 cut(s)	315, 1093, 1874, 2704, 2881, 2892, 3561
BseJI	GATNNNNATC	3 cut(s)	2130, 2371, 3617
BseLI	CCNNNNNNNGG	2 cut(s)	3671, 3686
BseMI	GCAATG	3 cut(s)	812, 1370, 3007
BseNI	ACTGG	9 cut(s)	626, 766, 2057, 2350, 2596, 2804, 3109, 3282, 3389
BseRI	GAGGAG	3 cut(s)	798, 1429, 3748
BseSI	GKGCMC	2 cut(s)	1852, 2064
BseXI	GCAGC	8 cut(s)	467, 821, 1109, 1606, 1711, 1835, 2488, 2501
BseYI	CCCAGC	2 cut(s)	3563, 3716
BsgI	GTGCAG	1 cut(s)	1619
Bsh1236I	CGCG	1 cut(s)	1546
BshVI	ATCGAT	2 cut(s)	1741, 2715
BsiHKAI	GWGCWC	5 cut(s)	1580, 1852, 2255, 2981, 3758
BsiSI	CCGG	3 cut(s)	223, 1434, 3773
BslFI	GGGAC	3 cut(s)	1210, 3353, 3645
BslI	CCNNNNNNNGG	2 cut(s)	3671, 3686
BsmAI	GTCTC	4 cut(s)	990, 2204, 2854, 3115
BsmFI	GGGAC	3 cut(s)	1210, 3353, 3645
BsmI	GAATGC	3 cut(s)	2215, 3180, 3768
Bso31I	GGTCTC	1 cut(s)	3115
Bsp1286I	GDGCHC	6 cut(s)	1580, 1852, 2064, 2255, 2981, 3758
Bsp1407I	TGTACA	2 cut(s)	574, 994
Bsp19I	CCATGG	1 cut(s)	793
BspACI	CCGC	5 cut(s)	275, 1126, 1262, 2499, 3647
BspDI	ATCGAT	2 cut(s)	1741, 2715
BspFNI	CGCG	1 cut(s)	1546
BspHI	TCATGA	3 cut(s)	697, 1167, 2418
BspLI	GGNNCC	3 cut(s)	227, 2853, 2942
BspPI	GGATC	6 cut(s)	303, 1737, 2126, 2845, 2957, 3380
BspTNI	GGTCTC	1 cut(s)	3115
BsrDI	GCAATG	3 cut(s)	812, 1370, 3007
BsrFI	RCCGGY	1 cut(s)	222
BsrGI	TGTACA	2 cut(s)	574, 994
BsrI	ACTGG	9 cut(s)	626, 766, 2057, 2350, 2596, 2804, 3109, 3282, 3389
BssAI	RCCGGY	1 cut(s)	222
BssECI	CCNNGG	7 cut(s)	384, 793, 1247, 2102, 2295, 2388, 3051
BssNI	GRCGYC	1 cut(s)	2786
BssSI	CACGAG	2 cut(s)	53, 2982
BssT1I	CCWWGG	3 cut(s)	384, 793, 2388
Bst2BI	CACGAG	2 cut(s)	53, 2982
Bst6I	CTCTTC	4 cut(s)	461, 1561, 1680, 3424
BstACI	GRCGYC	1 cut(s)	2786
BstAPI	GCANNNNNTGC	1 cut(s)	2059
BstAUI	TGTACA	2 cut(s)	574, 994
BstBAI	YACGTR	2 cut(s)	713, 1400
BstDSI	CCRYGG	2 cut(s)	793, 3051
BstEII	GGTNACC	1 cut(s)	3055
BstF5I	GGATG	7 cut(s)	315, 1093, 1874, 2704, 2881, 2892, 3561
BstFNI	CGCG	1 cut(s)	1546
BstH2I	RGCGCY	1 cut(s)	2897
BstHHI	GCGC	3 cut(s)	1546, 2896, 3292
BstMAI	GTCTC	4 cut(s)	990, 2204, 2854, 3115
BstMWI	GCNNNNNNNGC	7 cut(s)	905, 1134, 1249, 1628, 1856, 2059, 2498
BstNSI	RCATGY	3 cut(s)	1054, 1243, 3584
BstPI	GGTNACC	1 cut(s)	3055
BstSFI	CTRYAG	3 cut(s)	1325, 1680, 2832
BstSLI	GKGCMC	2 cut(s)	1852, 2064
BstUI	CGCG	1 cut(s)	1546
BstV1I	GCAGC	8 cut(s)	467, 821, 1109, 1606, 1711, 1835, 2488, 2501
BstV2I	GAAGAC	3 cut(s)	528, 2409, 3206
BstX2I	RGATCY	4 cut(s)	295, 2131, 2372, 2962
BstXI	CCANNNNNNTGG	2 cut(s)	418, 541
BstYI	RGATCY	4 cut(s)	295, 2131, 2372, 2962
Bsu15I	ATCGAT	2 cut(s)	1741, 2715
Bsu36I	CCTNAGG	1 cut(s)	3431
BsuI	GTATCC	2 cut(s)	391, 950
BsuTUI	ATCGAT	2 cut(s)	1741, 2715
BtgI	CCRYGG	2 cut(s)	793, 3051
BtrI	CACGTC	1 cut(s)	572
BtsCI	GGATG	7 cut(s)	315, 1093, 1874, 2704, 2881, 2892, 3561
BtsI	GCAGTG	1 cut(s)	2955
BtsIMutI	CAGTG	9 cut(s)	613, 1231, 2064, 2343, 2531, 2824, 2853, 2955, 3289
CaiI	CAGNNNCTG	2 cut(s)	892, 1103
CciI	TCATGA	3 cut(s)	697, 1167, 2418
CfoI	GCGC	3 cut(s)	1546, 2896, 3292
Cfr10I	RCCGGY	1 cut(s)	222
Cfr13I	GGNCC	8 cut(s)	277, 1251, 1269, 2105, 2396, 2594, 2940, 3719
ClaI	ATCGAT	2 cut(s)	1741, 2715
CsiI	ACCWGGT	2 cut(s)	2317, 2596
Csp6I	GTAC	5 cut(s)	575, 995, 1548, 2139, 3009
CviQI	GTAC	5 cut(s)	575, 995, 1548, 2139, 3009
EaeI	YGGCCR	2 cut(s)	1305, 3439
Eam1104I	CTCTTC	4 cut(s)	461, 1561, 1680, 3424
EarI	CTCTTC	4 cut(s)	461, 1561, 1680, 3424
Ecl136II	GAGCTC	3 cut(s)	1578, 2253, 3756
Eco130I	CCWWGG	3 cut(s)	384, 793, 2388
Eco147I	AGGCCT	1 cut(s)	3376
Eco24I	GRGCYC	3 cut(s)	1580, 2255, 3758
Eco31I	GGTCTC	1 cut(s)	3115
Eco47I	GGWCC	3 cut(s)	277, 2594, 2940
Eco47III	AGCGCT	1 cut(s)	2895
Eco53kI	GAGCTC	3 cut(s)	1578, 2253, 3756
Eco57I	CTGAAG	6 cut(s)	525, 677, 2421, 2829, 3060, 3114
Eco81I	CCTNAGG	1 cut(s)	3431
Eco91I	GGTNACC	1 cut(s)	3055
EcoICRI	GAGCTC	3 cut(s)	1578, 2253, 3756
EcoO109I	RGGNCCY	1 cut(s)	2940
EcoO65I	GGTNACC	1 cut(s)	3055
EcoRI	GAATTC	3 cut(s)	37, 188, 1118
EcoT14I	CCWWGG	3 cut(s)	384, 793, 2388
EcoT22I	ATGCAT	2 cut(s)	1498, 2653
EcoT38I	GRGCYC	3 cut(s)	1580, 2255, 3758
ErhI	CCWWGG	3 cut(s)	384, 793, 2388
FalI	AAGNNNNNCTT	8 cut(s)	650, 682, 655, 687, 897, 929, 1125, 1157
FaqI	GGGAC	3 cut(s)	1210, 3353, 3645
FauI	CCCGC	1 cut(s)	3640
FauNDI	CATATG	3 cut(s)	265, 1834, 2326
FbaI	TGATCA	3 cut(s)	403, 802, 1930
FblI	GTMKAC	2 cut(s)	1679, 3031
Fnu4HI	GCNGC	8 cut(s)	481, 810, 1098, 1620, 1725, 1824, 2490, 2502
FokI	GGATG	7 cut(s)	302, 1100, 1881, 2711, 2888, 2899, 3568
FriOI	GRGCYC	3 cut(s)	1580, 2255, 3758
Fsp4HI	GCNGC	8 cut(s)	481, 810, 1098, 1620, 1725, 1824, 2490, 2502
GlaI	GCGC	3 cut(s)	1545, 2895, 3291
GluI	GCNGC	8 cut(s)	481, 810, 1098, 1620, 1725, 1824, 2490, 2502
GsaI	CCCAGC	2 cut(s)	3567, 3720
GsuI	CTGGAG	1 cut(s)	3005
HaeII	RGCGCY	1 cut(s)	2897
HapII	CCGG	3 cut(s)	223, 1434, 3773
HhaI	GCGC	3 cut(s)	1546, 2896, 3292
Hin1I	GRCGYC	1 cut(s)	2786
Hin6I	GCGC	3 cut(s)	1544, 2894, 3290
HinP1I	GCGC	3 cut(s)	1544, 2894, 3290
HincII	GTYRAC	2 cut(s)	790, 1332
HindII	GTYRAC	2 cut(s)	790, 1332
HindIII	AAGCTT	4 cut(s)	664, 911, 973, 2825
HpaII	CCGG	3 cut(s)	223, 1434, 3773
Hpy166II	GTNNAC	7 cut(s)	575, 611, 790, 1332, 1680, 1850, 3032
Hpy8I	GTNNAC	7 cut(s)	575, 611, 790, 1332, 1680, 1850, 3032
HpyAV	CCTTC	7 cut(s)	652, 766, 1139, 1395, 1859, 2446, 3472
HpyCH4IV	ACGT	4 cut(s)	571, 712, 1399, 2786
HpyF10VI	GCNNNNNNNGC	7 cut(s)	905, 1134, 1249, 1628, 1856, 2059, 2498
HpySE526I	ACGT	4 cut(s)	571, 712, 1399, 2786
Hsp92I	GRCGYC	1 cut(s)	2786
HspAI	GCGC	3 cut(s)	1544, 2894, 3290
Ksp22I	TGATCA	3 cut(s)	403, 802, 1930
LmnI	GCTCC	4 cut(s)	2050, 2857, 3287, 3761
Lsp1109I	GCAGC	8 cut(s)	467, 821, 1109, 1606, 1711, 1835, 2488, 2501
MabI	ACCWGGT	2 cut(s)	2317, 2596
MaeII	ACGT	4 cut(s)	571, 712, 1399, 2786
MaeIII	GTNAC	6 cut(s)	283, 1395, 2149, 2290, 3055, 3448
MfeI	CAATTG	2 cut(s)	1581, 2262
MflI	RGATCY	4 cut(s)	295, 2131, 2372, 2962
MhlI	GDGCHC	6 cut(s)	1580, 1852, 2064, 2255, 2981, 3758
MlsI	TGGCCA	2 cut(s)	1307, 3441
MluNI	TGGCCA	2 cut(s)	1307, 3441
MlyI	GAGTC	2 cut(s)	854, 1222
MmeI	TCCRAC	1 cut(s)	2261
Mox20I	TGGCCA	2 cut(s)	1307, 3441
Mph1103I	ATGCAT	2 cut(s)	1498, 2653
MroXI	GAANNNNTTC	1 cut(s)	2456
MscI	TGGCCA	2 cut(s)	1307, 3441
MslI	CAYNNNNRTG	4 cut(s)	696, 798, 1792, 2630
Msp20I	TGGCCA	2 cut(s)	1307, 3441
MspA1I	CMGCKG	2 cut(s)	2492, 2501
MspI	CCGG	3 cut(s)	223, 1434, 3773
MunI	CAATTG	2 cut(s)	1581, 2262
Mva1269I	GAATGC	3 cut(s)	2215, 3180, 3768
MvnI	CGCG	1 cut(s)	1546
MwoI	GCNNNNNNNGC	7 cut(s)	905, 1134, 1249, 1628, 1856, 2059, 2498
NciI	CCSGG	1 cut(s)	1435
NcoI	CCATGG	1 cut(s)	793
NdeI	CATATG	3 cut(s)	265, 1834, 2326
NlaIV	GGNNCC	3 cut(s)	227, 2853, 2942
NmuCI	GTSAC	2 cut(s)	283, 3055
NsiI	ATGCAT	2 cut(s)	1498, 2653
NspI	RCATGY	3 cut(s)	1054, 1243, 3584
PaeI	GCATGC	1 cut(s)	1243
PagI	TCATGA	3 cut(s)	697, 1167, 2418
PceI	AGGCCT	1 cut(s)	3376
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PctI	GAATGC	3 cut(s)	2215, 3180, 3768
PdmI	GAANNNNTTC	1 cut(s)	2456
PflFI	GACNNNGTC	1 cut(s)	2598
PflMI	CCANNNNNTGG	2 cut(s)	3671, 3686
PfoI	TCCNGGA	1 cut(s)	1216
PkrI	GCNGC	8 cut(s)	482, 811, 1099, 1621, 1726, 1825, 2491, 2503
PleI	GAGTC	2 cut(s)	854, 1221
PpsI	GAGTC	2 cut(s)	854, 1221
Ppu21I	YACGTR	2 cut(s)	713, 1400
PpuMI	RGGWCCY	1 cut(s)	2940
PshBI	ATTAAT	1 cut(s)	2246
PsiI	TTATAA	2 cut(s)	971, 1083
Psp124BI	GAGCTC	3 cut(s)	1580, 2255, 3758
Psp5II	RGGWCCY	1 cut(s)	2940
PspEI	GGTNACC	1 cut(s)	3055
PspFI	CCCAGC	2 cut(s)	3563, 3716
PspN4I	GGNNCC	3 cut(s)	227, 2853, 2942
PspPI	GGNCC	8 cut(s)	277, 1251, 1269, 2105, 2396, 2594, 2940, 3719
PspPPI	RGGWCCY	1 cut(s)	2940
PsrI	GAACNNNNNNTAC	2 cut(s)	1374, 1406
PstNI	CAGNNNCTG	2 cut(s)	892, 1103
PsuI	RGATCY	4 cut(s)	295, 2131, 2372, 2962
PsyI	GACNNNGTC	1 cut(s)	2598
PvuII	CAGCTG	1 cut(s)	2492
RsaI	GTAC	5 cut(s)	576, 996, 1549, 2140, 3010
RsaNI	GTAC	5 cut(s)	575, 995, 1548, 2139, 3009
RseI	CAYNNNNRTG	4 cut(s)	696, 798, 1792, 2630
SacI	GAGCTC	3 cut(s)	1580, 2255, 3758
SatI	GCNGC	8 cut(s)	481, 810, 1098, 1620, 1725, 1824, 2490, 2502
Sau96I	GGNCC	8 cut(s)	277, 1251, 1269, 2105, 2396, 2594, 2940, 3719
SchI	GAGTC	2 cut(s)	854, 1222
SduI	GDGCHC	6 cut(s)	1580, 1852, 2064, 2255, 2981, 3758
SexAI	ACCWGGT	2 cut(s)	2317, 2596
SfcI	CTRYAG	3 cut(s)	1325, 1680, 2832
SinI	GGWCC	3 cut(s)	277, 2594, 2940
SmiMI	CAYNNNNRTG	4 cut(s)	696, 798, 1792, 2630
SpeI	ACTAGT	1 cut(s)	3145
SphI	GCATGC	1 cut(s)	1243
SseBI	AGGCCT	1 cut(s)	3376
SsiI	CCGC	5 cut(s)	275, 1126, 1262, 2499, 3647
SspI	AATATT	1 cut(s)	3627
SstI	GAGCTC	3 cut(s)	1580, 2255, 3758
StuI	AGGCCT	1 cut(s)	3376
StyI	CCWWGG	3 cut(s)	384, 793, 2388
TaiI	ACGT	4 cut(s)	574, 715, 1402, 2789
TaqI	TCGA	7 cut(s)	45, 209, 256, 489, 1741, 2715, 3695
TaqII	GACCGA	1 cut(s)	3139
TatI	WGTACW	2 cut(s)	574, 994
TscAI	CASTG	9 cut(s)	613, 1231, 2064, 2350, 2531, 2824, 2853, 2955, 3289
TseFI	GTSAC	2 cut(s)	283, 3055
TseI	GCWGC	8 cut(s)	480, 809, 1097, 1619, 1724, 1823, 2489, 2501
Tsp45I	GTSAC	2 cut(s)	283, 3055
TspGWI	ACGGA	1 cut(s)	784
TspRI	CASTG	9 cut(s)	613, 1231, 2064, 2350, 2531, 2824, 2853, 2955, 3289
Tth111I	GACNNNGTC	1 cut(s)	2598
Van91I	CCANNNNNTGG	2 cut(s)	3671, 3686
VneI	GTGCAC	1 cut(s)	1848
VpaK11BI	GGWCC	3 cut(s)	277, 2594, 2940
VspI	ATTAAT	1 cut(s)	2246
XbaI	TCTAGA	1 cut(s)	3164
XceI	RCATGY	3 cut(s)	1054, 1243, 3584
XmiI	GTMKAC	2 cut(s)	1679, 3031
XmnI	GAANNNNTTC	1 cut(s)	2456
ZraI	GACGTC	1 cut(s)	2787
Zsp2I	ATGCAT	2 cut(s)	1498, 2653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.