Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8343959.1

Orthogroup ID

OG0004789

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1018

Gene Structure 1018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8343959.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 325 bp

atcgagctccgacatggccaactatctcgctcagttccagaccatcaagaattcactcgatcatctcgttattgctgttgaagatgttagtgatttgtggcctactgtcaagaagggatttgaggagcacttgcctttcaaaagagcttgtttaaataacaagacccgtaatcctgtgtttgtggagaatttccgtgctgaattcatattaacaacagatgcaagacttcgcagccgattcccacaggagcagtcattgttttggtttcgggagccatatgcaactgcggtcctcgtcacctgtgaggtaagctgcaatctcctt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006891 GO:0007049 GO:0008150 GO:0009987 GO:0012505 GO:0016043 GO:0016192 GO:0016197 GO:0016482 GO:0022402 GO:0022607 GO:0030008 GO:0031410 GO:0031982 GO:0031984 GO:0032506 GO:0032991 GO:0034498 GO:0042147 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051301 GO:0051641 GO:0051649 GO:0061640 GO:0071840 GO:0097708 GO:0098791 GO:0099023 GO:1902410 GO:1903047 GO:1990071

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Foie-gras_1 TRAPPC10

Protein Analysis

108

Amino Acids

12.52

Weight (kDa)

6.07

Isoelectric Point (pI)

59.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54440 AT5G54440 AT5G54440
fragaria_vesca	FvH4_3g20750 FvH4_3g20750 FvH4_3g20750 FvH4_3g20750
malus_domestica	MD03G1222200.v1.1 MD11G1239600.v1.1
prunus_persica	Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1
pyrus_communis	pycom03g17080 pycom11g21130
rosa_chinensis	RchiOBHm_Chr5g0034971
rosa_laevigata	RLG00000033586 RLG00000033589
rosa_multiflora	Rmu_co8343959.1_g000001 Rmu_sc0000879.1_g000039 Rmu_sc0021290.1_g000001
rosa_roxburghii	Rroxscaffold_1G00045410
rosa_rugosa	Rorug05G0149100 Rorug05G0149200 Rorug05G0149300
rosa_samantha	Rh5AG242200 Rh5BG241800 Rh5CG273300 Rh5DG250400
rosa_wichuraiana	Rw5G022120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	288
AcoI	YGGCCR	1 cut(s)	16
AcsI	RAATTY	3 cut(s)	50, 188, 201
AgsI	TTSAA	2 cut(s)	81, 140
AluBI	AGCT	3 cut(s)	7, 147, 313
AluI	AGCT	3 cut(s)	7, 147, 313
Alw21I	GWGCWC	2 cut(s)	9, 130
AoxI	GGCC	2 cut(s)	16, 99
ApeKI	GCWGC	2 cut(s)	232, 313
ApoI	RAATTY	3 cut(s)	50, 188, 201
AspS9I	GGNCC	1 cut(s)	290
AsuHPI	GGTGA	1 cut(s)	290
AvaII	GGWCC	1 cut(s)	290
BalI	TGGCCA	1 cut(s)	18
BanII	GRGCYC	1 cut(s)	9
Bbv12I	GWGCWC	2 cut(s)	9, 130
BbvI	GCAGC	2 cut(s)	244, 300
BccI	CCATC	1 cut(s)	51
BisI	GCNGC	2 cut(s)	233, 314
BlsI	GCNGC	2 cut(s)	234, 315
Bme18I	GGWCC	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	290
BmiI	GGNNCC	1 cut(s)	274
BmsI	GCATC	1 cut(s)	209
BseMII	CTCAG	1 cut(s)	45
BseRI	GAGGAG	1 cut(s)	138
BseXI	GCAGC	2 cut(s)	244, 300
BshFI	GGCC	2 cut(s)	18, 101
BsiHKAI	GWGCWC	2 cut(s)	9, 130
BsnI	GGCC	2 cut(s)	18, 101
Bsp1286I	GDGCHC	2 cut(s)	9, 130
Bsp143I	GATC	1 cut(s)	59
BspACI	CCGC	1 cut(s)	288
BspANI	GGCC	2 cut(s)	18, 101
BspCNI	CTCAG	1 cut(s)	44
BspLI	GGNNCC	1 cut(s)	274
BssMI	GATC	1 cut(s)	59
Bst4CI	ACNGT	1 cut(s)	107
BstDEI	CTNAG	1 cut(s)	31
BstKTI	GATC	1 cut(s)	62
BstMBI	GATC	1 cut(s)	59
BstV1I	GCAGC	2 cut(s)	244, 300
BsuRI	GGCC	2 cut(s)	18, 101
Cfr13I	GGNCC	1 cut(s)	290
CviAII	CATG	1 cut(s)	14
CviJI	RGCY	7 cut(s)	7, 18, 101, 147, 235, 275, 313
CviKI_1	RGCY	7 cut(s)	7, 18, 101, 147, 235, 275, 313
DdeI	CTNAG	1 cut(s)	31
DpnI	GATC	1 cut(s)	61
DpnII	GATC	1 cut(s)	59
DraI	TTTAAA	1 cut(s)	154
EaeI	YGGCCR	1 cut(s)	16
Ecl136II	GAGCTC	1 cut(s)	7
Eco24I	GRGCYC	1 cut(s)	9
Eco47I	GGWCC	1 cut(s)	290
Eco53kI	GAGCTC	1 cut(s)	7
EcoICRI	GAGCTC	1 cut(s)	7
EcoRI	GAATTC	2 cut(s)	50, 201
EcoT38I	GRGCYC	1 cut(s)	9
FaeI	CATG	1 cut(s)	17
FaiI	YATR	4 cut(s)	15, 207, 278, 280
FatI	CATG	1 cut(s)	13
FauNDI	CATATG	1 cut(s)	278
Fnu4HI	GCNGC	2 cut(s)	233, 314
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	2 cut(s)	233, 314
GluI	GCNGC	2 cut(s)	233, 314
HaeIII	GGCC	2 cut(s)	18, 101
Hin1II	CATG	1 cut(s)	17
HinfI	GANTC	1 cut(s)	238
HphI	GGTGA	1 cut(s)	290
Hpy188I	TCNGA	1 cut(s)	11
Hpy188III	TCNNGA	4 cut(s)	38, 47, 110, 270
HpyAV	CCTTC	1 cut(s)	107
HpyCH4III	ACNGT	1 cut(s)	107
HpyCH4V	TGCA	3 cut(s)	222, 282, 316
HpyF3I	CTNAG	1 cut(s)	31
Hsp92II	CATG	1 cut(s)	17
Kzo9I	GATC	1 cut(s)	59
LmnI	GCTCC	4 cut(s)	12, 125, 248, 272
LpnPI	CCDG	4 cut(s)	51, 187, 231, 314
Lsp1109I	GCAGC	2 cut(s)	244, 300
LweI	GCATC	1 cut(s)	209
MaeIII	GTNAC	1 cut(s)	296
MalI	GATC	1 cut(s)	61
MboI	GATC	1 cut(s)	59
MboII	GAAGA	1 cut(s)	93
MhlI	GDGCHC	2 cut(s)	9, 130
MlsI	TGGCCA	1 cut(s)	18
MluCI	AATT	3 cut(s)	50, 188, 201
MluNI	TGGCCA	1 cut(s)	18
MmeI	TCCRAC	1 cut(s)	34
MnlI	CCTC	3 cut(s)	116, 299, 303
Mox20I	TGGCCA	1 cut(s)	18
MscI	TGGCCA	1 cut(s)	18
MseI	TTAA	2 cut(s)	153, 210
Msp20I	TGGCCA	1 cut(s)	18
NdeI	CATATG	1 cut(s)	278
NdeII	GATC	1 cut(s)	59
NlaIII	CATG	1 cut(s)	17
NlaIV	GGNNCC	1 cut(s)	274
NmuCI	GTSAC	1 cut(s)	296
PcsI	WCGNNNNNNNCGW	1 cut(s)	64
PfeI	GAWTC	1 cut(s)	238
PkrI	GCNGC	2 cut(s)	234, 315
Psp124BI	GAGCTC	1 cut(s)	9
PspN4I	GGNNCC	1 cut(s)	274
PspPI	GGNCC	1 cut(s)	290
SacI	GAGCTC	1 cut(s)	9
SaqAI	TTAA	2 cut(s)	153, 210
SatI	GCNGC	2 cut(s)	233, 314
Sau3AI	GATC	1 cut(s)	59
Sau96I	GGNCC	1 cut(s)	290
SduI	GDGCHC	2 cut(s)	9, 130
SetI	ASST	5 cut(s)	9, 149, 303, 310, 315
SfaNI	GCATC	1 cut(s)	209
SinI	GGWCC	1 cut(s)	290
Sse9I	AATT	3 cut(s)	50, 188, 201
SsiI	CCGC	1 cut(s)	288
SstI	GAGCTC	1 cut(s)	9
TaaI	ACNGT	1 cut(s)	107
TaqI	TCGA	2 cut(s)	3, 58
TasI	AATT	3 cut(s)	50, 188, 201
TfiI	GAWTC	1 cut(s)	238
Tru1I	TTAA	2 cut(s)	153, 210
Tru9I	TTAA	2 cut(s)	153, 210
TseFI	GTSAC	1 cut(s)	296
TseI	GCWGC	2 cut(s)	232, 313
Tsp45I	GTSAC	1 cut(s)	296
TspDTI	ATGAA	1 cut(s)	194
TspGWI	ACGGA	1 cut(s)	183
VpaK11BI	GGWCC	1 cut(s)	290
XapI	RAATTY	3 cut(s)	50, 188, 201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.