Rroxscaffold_1G00045400

ubiE/COQ5 methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0009982
Physical Location & Seq
Forward (+)
64376877 .. 64379599
2723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00045400.1

Sequence Viewer

Length: 1002 bp
ATGAAAATATGGCAGGAGATTAAAATGTCAATGCAGAAGGACATGGATGATTTGAAATTATGGGAAGTCTCTCTCCGGCTCGGTTCGGCTGCCGGGGAAAAGATTTGCAAGTTTTTCTTTCGGAGATTGGAAAATGGGGAAATCGGGCAACAGGGACTGGACCCAGATCTACGCCATATACGGGCTCGACCAGTGGCAGACCATACTGTTCCTACTCTTCCACGCCGCCGTGCTGTTTACCATTTTGTCCCTCCTCTACCTCACATATTTCGACCCCATCACCCTCTTCTTCCACCGCCTCCTCCCCATCGGCTCCGCCCGCTTCGCCGCCGGCTTCACCGGCTCCGTCACCGCCCTCTCCGCCCTCTGCCTCTTCTTCGCCTCCTTCCACTTCCTCCACTCCTCCCTCCCCTCCACTACGACGTCGTCCAGCGCATGGTCGCCTCCGTCAACGACTGGTCAACCGTCAAGCACGCCCTCGACCTCGGCTGCGGCCGCGGCATCCTCCTCAACGCCGTCGCCACCCAGCTCAAGAAGGAGGGCAGTTCGGGCCGGGTCGTCGGGTTGGACCGGTCCAAGATGACGAGCCTTTCCACCTTGCGGACCGCCAAGCTGGAAGGTGTCGGGGAGTACGTGACCTGCCGTGAGGGCGACCCCAGGAGATTGCCGTTCGGGGACAACTACTTCGACGTGGTCGTATCCGCTGTGTTCGTCCACACCGTAGGGAAGGAGTACGGGCATCGGACGGTGGAGGCTTCGGCCGAGAGGATGAGGGTGGTCGGTGAGATGGTCCGGGTCTTAAAGCCCGGTGGGTCTGGGGTGGTGTGGGACCTACTGCACGTTCCGGAATACGTGCGGAGGCTGCAGGAGCTGAAGATGGAGGACATTCGGGTCTCGGAGCGGGTCACGGCCTTCATGGTCAGCAGTCAAATCGTGTCGTTTCGGAAGCCCAGTCACCACTATTTTGGGCTCGGAGAGGTCAGGCTGGACTGGAGATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

333

Amino Acids

38.24

Weight (kDa)

10.28

Isoelectric Point (pI)

53.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ubie_methyltran PF01209 148 - 277 2e-06 ubiE/COQ5 methyltransferase family
Methyltransf_31 PF13847 158 - 279 6.1e-11 Methyltransferase domain
Methyltransf_11 PF08241 160 - 272 5.5e-15 Methyltransferase domain
Methyltransf_25 PF13649 160 - 271 2.3e-12 Methyltransferase domain
Methyltransf_12 PF08242 160 - 271 2e-06 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009982)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15530 AT3G15530 AT5G54400
fragaria_vesca FvH4_3g20760 FvH4_3g20760
malus_domestica MD03G1221800.v1.1 MD11G1239200.v1.1
prunus_persica Prupe.4G187700_v2.0.a1 Prupe.4G187700_v2.0.a1
pyrus_communis pycom03g17060 pycom11g21090
rosa_chinensis RchiOBHm_Chr5g0034991
rosa_laevigata RLG00000033590
rosa_multiflora Rmu_sc0000879.1_g000037
rosa_roxburghii Rroxscaffold_1G00045400
rosa_rugosa Rorug05G0149300
rosa_samantha Rh5AG242300 Rh5BG241900 Rh5CG273400 Rh5DG250500
rosa_wichuraiana Rw5G022130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 890
AatII GACGTC 1 cut(s) 426
Acc36I ACCTGC 1 cut(s) 647
AccB7I CCANNNNNTGG 1 cut(s) 436
AccBSI CCGCTC 1 cut(s) 901
AccII CGCG 1 cut(s) 498
AccIII TCCGGA 1 cut(s) 844
AcoI YGGCCR 2 cut(s) 493, 759
AcuI CTGAAG 1 cut(s) 893
AcyI GRCGYC 1 cut(s) 423
AfaI GTAC 2 cut(s) 632, 734
AfiI CCNNNNNNNGG 3 cut(s) 181, 436, 600
AgeI ACCGGT 1 cut(s) 570
AgsI TTSAA 1 cut(s) 55
AjiI CACGTC 1 cut(s) 691
AjnI CCWGG 1 cut(s) 656
AluBI AGCT 3 cut(s) 529, 613, 871
AluI AGCT 3 cut(s) 529, 613, 871
Alw26I GTCTC 2 cut(s) 73, 898
AlwNI CAGNNNCTG 2 cut(s) 157, 871
Aor13HI TCCGGA 1 cut(s) 844
AoxI GGCC 4 cut(s) 493, 550, 759, 909
ApeKI GCWGC 3 cut(s) 89, 489, 862
ArsI GACNNNNNNTTYG 2 cut(s) 668, 700
AsiGI ACCGGT 1 cut(s) 570
AspLEI GCGC 1 cut(s) 435
AspS9I GGNCC 7 cut(s) 160, 550, 568, 573, 603, 790, 829
AsuC2I CCSGG 4 cut(s) 94, 554, 794, 807
AsuHPI GGTGA 5 cut(s) 272, 329, 341, 794, 947
AvaII GGWCC 6 cut(s) 160, 568, 573, 603, 790, 829
BanII GRGCYC 2 cut(s) 187, 972
BbvI GCAGC 3 cut(s) 76, 476, 849
BccI CCATC 4 cut(s) 285, 315, 781, 871
BceAI ACGGC 5 cut(s) 213, 500, 627, 652, 924
BcgI CGANNNNNNTGC 2 cut(s) 913, 947
BciT130I CCWGG 1 cut(s) 658
BciVI GTATCC 1 cut(s) 709
BcnI CCSGG 4 cut(s) 94, 554, 794, 807
BcoDI GTCTC 2 cut(s) 73, 898
BfmI CTRYAG 1 cut(s) 863
BfuAI ACCTGC 1 cut(s) 647
BfuI GTATCC 1 cut(s) 709
BglI GCCNNNNNGGC 1 cut(s) 648
BglII AGATCT 1 cut(s) 166
BisI GCNGC 8 cut(s) 90, 226, 328, 490, 493, 496, 499, 863
BlsI GCNGC 8 cut(s) 91, 227, 329, 491, 494, 497, 500, 864
Bme1390I CCNGG 5 cut(s) 94, 554, 658, 794, 807
Bme18I GGWCC 6 cut(s) 160, 568, 573, 603, 790, 829
BmgBI CACGTC 1 cut(s) 691
BmgT120I GGNCC 7 cut(s) 160, 550, 568, 573, 603, 790, 829
BmiI GGNNCC 4 cut(s) 162, 314, 344, 830
BmrFI CCNGG 5 cut(s) 94, 554, 658, 794, 807
BmrI ACTGGG 1 cut(s) 945
BmsI GCATC 3 cut(s) 510, 748, 986
BmuI ACTGGG 1 cut(s) 945
BpuEI CTTGAG 1 cut(s) 515
BpuMI CCSGG 4 cut(s) 94, 554, 794, 807
BsaAI YACGTR 2 cut(s) 634, 853
BsaHI GRCGYC 1 cut(s) 423
BsaI GGTCTC 1 cut(s) 898
BsaJI CCNNGG 4 cut(s) 93, 484, 496, 656
BsaWI WCCGGW 2 cut(s) 570, 844
Bsc4I CCNNNNNNNGG 3 cut(s) 181, 436, 600
Bse118I RCCGGY 3 cut(s) 330, 339, 570
Bse1I ACTGG 5 cut(s) 162, 191, 461, 951, 995
BseAI TCCGGA 1 cut(s) 844
BseBI CCWGG 1 cut(s) 658
BseDI CCNNGG 4 cut(s) 93, 484, 496, 656
BseGI GGATG 3 cut(s) 52, 501, 774
BseLI CCNNNNNNNGG 3 cut(s) 181, 436, 600
BseNI ACTGG 5 cut(s) 162, 191, 461, 951, 995
BseRI GAGGAG 4 cut(s) 243, 291, 392, 497
BseX3I CGGCCG 2 cut(s) 493, 759
BseXI GCAGC 3 cut(s) 76, 476, 849
BseYI CCCAGC 1 cut(s) 525
BsgI GTGCAG 1 cut(s) 821
Bsh1236I CGCG 1 cut(s) 498
Bsh1285I CGRYCG 2 cut(s) 496, 762
BshFI GGCC 4 cut(s) 495, 552, 761, 911
BshTI ACCGGT 1 cut(s) 570
BsiEI CGRYCG 2 cut(s) 496, 762
BsiSI CCGG 9 cut(s) 76, 93, 331, 340, 553, 571, 793, 807, 845
BslFI GGGAC 4 cut(s) 168, 233, 689, 842
BslI CCNNNNNNNGG 3 cut(s) 181, 436, 600
BsmAI GTCTC 2 cut(s) 73, 898
BsmFI GGGAC 4 cut(s) 168, 233, 689, 842
BsnI GGCC 4 cut(s) 495, 552, 761, 911
Bso31I GGTCTC 1 cut(s) 898
Bsp1286I GDGCHC 2 cut(s) 187, 972
Bsp13I TCCGGA 1 cut(s) 844
Bsp143I GATC 1 cut(s) 166
BspANI GGCC 4 cut(s) 495, 552, 761, 911
BspEI TCCGGA 1 cut(s) 844
BspFNI CGCG 1 cut(s) 498
BspLI GGNNCC 4 cut(s) 162, 314, 344, 830
BspMAI CTGCAG 1 cut(s) 867
BspMI ACCTGC 1 cut(s) 647
BspTNI GGTCTC 1 cut(s) 898
BsrBI CCGCTC 1 cut(s) 901
BsrFI RCCGGY 3 cut(s) 330, 339, 570
BsrI ACTGG 5 cut(s) 162, 191, 461, 951, 995
BssAI RCCGGY 3 cut(s) 330, 339, 570
BssECI CCNNGG 4 cut(s) 93, 484, 496, 656
BssMI GATC 1 cut(s) 166
BssNI GRCGYC 1 cut(s) 423
Bst2UI CCWGG 1 cut(s) 658
Bst4CI ACNGT 4 cut(s) 208, 466, 721, 748
Bst6I CTCTTC 3 cut(s) 222, 291, 378
BstACI GRCGYC 1 cut(s) 423
BstBAI YACGTR 2 cut(s) 634, 853
BstC8I GCNNGC 3 cut(s) 320, 332, 474
BstDSI CCRYGG 1 cut(s) 496
BstF5I GGATG 3 cut(s) 52, 501, 774
BstFNI CGCG 1 cut(s) 498
BstHHI GCGC 1 cut(s) 435
BstKTI GATC 1 cut(s) 169
BstMAI GTCTC 2 cut(s) 73, 898
BstMBI GATC 1 cut(s) 166
BstMCI CGRYCG 2 cut(s) 496, 762
BstNI CCWGG 1 cut(s) 658
BstSCI CCNGG 5 cut(s) 92, 552, 656, 792, 805
BstSFI CTRYAG 1 cut(s) 863
BstUI CGCG 1 cut(s) 498
BstV1I GCAGC 3 cut(s) 76, 476, 849
BstX2I RGATCY 1 cut(s) 166
BstXI CCANNNNNNTGG 1 cut(s) 965
BstYI RGATCY 1 cut(s) 166
BstZI CGGCCG 2 cut(s) 493, 759
BsuI GTATCC 1 cut(s) 709
BsuRI GGCC 4 cut(s) 495, 552, 761, 911
BtgI CCRYGG 1 cut(s) 496
BtrI CACGTC 1 cut(s) 691
BtsCI GGATG 3 cut(s) 52, 501, 774
BtsIMutI CAGTG 1 cut(s) 198
BveI ACCTGC 1 cut(s) 647
Cac8I GCNNGC 3 cut(s) 320, 332, 474
CaiI CAGNNNCTG 2 cut(s) 157, 871
CciNI GCGGCCGC 1 cut(s) 493
CfoI GCGC 1 cut(s) 435
Cfr10I RCCGGY 3 cut(s) 330, 339, 570
Cfr13I GGNCC 7 cut(s) 160, 550, 568, 573, 603, 790, 829
Cfr42I CCGCGG 1 cut(s) 499
CpoI CGGWCCG 1 cut(s) 603
Csp6I GTAC 2 cut(s) 631, 733
CspAI ACCGGT 1 cut(s) 570
CspI CGGWCCG 1 cut(s) 603
CviAII CATG 3 cut(s) 43, 436, 916
CviQI GTAC 2 cut(s) 631, 733
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
DrdI GACNNNNNNGTC 1 cut(s) 890
DseDI GACNNNNNNGTC 1 cut(s) 890
EaeI YGGCCR 2 cut(s) 493, 759
EagI CGGCCG 2 cut(s) 493, 759
Eam1104I CTCTTC 3 cut(s) 222, 291, 378
EarI CTCTTC 3 cut(s) 222, 291, 378
EciI GGCGGA 2 cut(s) 305, 350
EclXI CGGCCG 2 cut(s) 493, 759
Eco24I GRGCYC 2 cut(s) 187, 972
Eco31I GGTCTC 1 cut(s) 898
Eco47I GGWCC 6 cut(s) 160, 568, 573, 603, 790, 829
Eco52I CGGCCG 2 cut(s) 493, 759
Eco57I CTGAAG 1 cut(s) 893
EcoO109I RGGNCCY 1 cut(s) 829
EcoRII CCWGG 1 cut(s) 656
EcoT38I GRGCYC 2 cut(s) 187, 972
FaeI CATG 3 cut(s) 46, 439, 919
FaiI YATR 9 cut(s) 10, 44, 61, 177, 179, 204, 266, 437, 917
FalI AAGNNNNNCTT 2 cut(s) 101, 133
FaqI GGGAC 4 cut(s) 168, 233, 689, 842
FatI CATG 3 cut(s) 42, 435, 915
FauI CCCGC 2 cut(s) 327, 894
Fnu4HI GCNGC 8 cut(s) 90, 226, 328, 490, 493, 496, 499, 863
FokI GGATG 3 cut(s) 59, 488, 781
FriOI GRGCYC 2 cut(s) 187, 972
Fsp4HI GCNGC 8 cut(s) 90, 226, 328, 490, 493, 496, 499, 863
GlaI GCGC 1 cut(s) 434
GluI GCNGC 8 cut(s) 90, 226, 328, 490, 493, 496, 499, 863
GsaI CCCAGC 1 cut(s) 529
HaeIII GGCC 4 cut(s) 495, 552, 761, 911
HapII CCGG 9 cut(s) 76, 93, 331, 340, 553, 571, 793, 807, 845
HhaI GCGC 1 cut(s) 435
Hin1I GRCGYC 1 cut(s) 423
Hin1II CATG 3 cut(s) 46, 439, 919
Hin6I GCGC 1 cut(s) 433
HinP1I GCGC 1 cut(s) 433
HincII GTYRAC 2 cut(s) 451, 462
HindII GTYRAC 2 cut(s) 451, 462
HpaII CCGG 9 cut(s) 76, 93, 331, 340, 553, 571, 793, 807, 845
HphI GGTGA 5 cut(s) 272, 329, 341, 794, 947
Hpy166II GTNNAC 4 cut(s) 238, 451, 462, 715
Hpy188I TCNGA 5 cut(s) 123, 744, 898, 945, 974
Hpy188III TCNNGA 2 cut(s) 532, 845
Hpy8I GTNNAC 4 cut(s) 238, 451, 462, 715
Hpy99I CGWCG 5 cut(s) 425, 428, 521, 563, 692
HpyAV CCTTC 6 cut(s) 31, 395, 529, 611, 721, 922
HpyCH4III ACNGT 4 cut(s) 208, 466, 721, 748
HpyCH4IV ACGT 5 cut(s) 423, 633, 690, 840, 852
HpyCH4V TGCA 4 cut(s) 34, 108, 838, 865
HpySE526I ACGT 5 cut(s) 423, 633, 690, 840, 852
Hsp92I GRCGYC 1 cut(s) 423
Hsp92II CATG 3 cut(s) 46, 439, 919
HspAI GCGC 1 cut(s) 433
Kpn2I TCCGGA 1 cut(s) 844
KroI GCCGGC 1 cut(s) 330
KroNI GCCGGC 1 cut(s) 332
KspI CCGCGG 1 cut(s) 499
Kzo9I GATC 1 cut(s) 166
LmnI GCTCC 4 cut(s) 318, 348, 868, 898
Lsp1109I GCAGC 3 cut(s) 76, 476, 849
LweI GCATC 3 cut(s) 510, 748, 986
MaeII ACGT 5 cut(s) 423, 633, 690, 840, 852
MaeIII GTNAC 4 cut(s) 347, 634, 904, 953
MalI GATC 1 cut(s) 168
MbiI CCGCTC 1 cut(s) 901
MboI GATC 1 cut(s) 166
MboII GAAGA 6 cut(s) 209, 278, 281, 365, 368, 886
MflI RGATCY 1 cut(s) 166
MhlI GDGCHC 2 cut(s) 187, 972
MluCI AATT 1 cut(s) 56
MmeI TCCRAC 1 cut(s) 546
MroI TCCGGA 1 cut(s) 844
MroNI GCCGGC 1 cut(s) 330
MseI TTAA 2 cut(s) 21, 800
MspA1I CMGCKG 2 cut(s) 498, 704
MspI CCGG 9 cut(s) 76, 93, 331, 340, 553, 571, 793, 807, 845
MspR9I CCNGG 5 cut(s) 94, 554, 658, 794, 807
MvaI CCWGG 1 cut(s) 658
MvnI CGCG 1 cut(s) 498
NaeI GCCGGC 1 cut(s) 332
NciI CCSGG 4 cut(s) 94, 554, 794, 807
NdeII GATC 1 cut(s) 166
NgoMIV GCCGGC 1 cut(s) 330
NlaIII CATG 3 cut(s) 46, 439, 919
NlaIV GGNNCC 4 cut(s) 162, 314, 344, 830
NmeAIII GCCGAG 2 cut(s) 465, 787
NmuCI GTSAC 4 cut(s) 347, 634, 904, 953
NotI GCGGCCGC 1 cut(s) 493
PcsI WCGNNNNNNNCGW 3 cut(s) 630, 693, 717
PdiI GCCGGC 1 cut(s) 332
PflFI GACNNNGTC 2 cut(s) 425, 692
PflMI CCANNNNNTGG 1 cut(s) 436
PinAI ACCGGT 1 cut(s) 570
PkrI GCNGC 8 cut(s) 91, 227, 329, 491, 494, 497, 500, 864
Ppu21I YACGTR 2 cut(s) 634, 853
PpuMI RGGWCCY 1 cut(s) 829
Psp5II RGGWCCY 1 cut(s) 829
Psp6I CCWGG 1 cut(s) 656
PspFI CCCAGC 1 cut(s) 525
PspGI CCWGG 1 cut(s) 656
PspN4I GGNNCC 4 cut(s) 162, 314, 344, 830
PspPI GGNCC 7 cut(s) 160, 550, 568, 573, 603, 790, 829
PspPPI RGGWCCY 1 cut(s) 829
PstI CTGCAG 1 cut(s) 867
PstNI CAGNNNCTG 2 cut(s) 157, 871
PsuI RGATCY 1 cut(s) 166
PsyI GACNNNGTC 2 cut(s) 425, 692
RsaI GTAC 2 cut(s) 632, 734
RsaNI GTAC 2 cut(s) 631, 733
Rsr2I CGGWCCG 1 cut(s) 603
RsrII CGGWCCG 1 cut(s) 603
SacII CCGCGG 1 cut(s) 499
SaqAI TTAA 2 cut(s) 21, 800
SatI GCNGC 8 cut(s) 90, 226, 328, 490, 493, 496, 499, 863
Sau3AI GATC 1 cut(s) 166
Sau96I GGNCC 7 cut(s) 160, 550, 568, 573, 603, 790, 829
ScrFI CCNGG 5 cut(s) 94, 554, 658, 794, 807
SduI GDGCHC 2 cut(s) 187, 972
SfaNI GCATC 3 cut(s) 510, 748, 986
SfcI CTRYAG 1 cut(s) 863
Sfr303I CCGCGG 1 cut(s) 499
SgrBI CCGCGG 1 cut(s) 499
SinI GGWCC 6 cut(s) 160, 568, 573, 603, 790, 829
SmlI CTYRAG 1 cut(s) 530
SmoI CTYRAG 1 cut(s) 530
Sse9I AATT 1 cut(s) 56
StyD4I CCNGG 5 cut(s) 92, 552, 656, 792, 805
TaaI ACNGT 4 cut(s) 208, 466, 721, 748
TaiI ACGT 5 cut(s) 426, 636, 693, 843, 855
TaqI TCGA 4 cut(s) 187, 271, 480, 687
TasI AATT 1 cut(s) 56
TauI GCSGC 5 cut(s) 228, 330, 495, 498, 501
Tru1I TTAA 2 cut(s) 21, 800
Tru9I TTAA 2 cut(s) 21, 800
TscAI CASTG 1 cut(s) 198
TseFI GTSAC 4 cut(s) 347, 634, 904, 953
TseI GCWGC 3 cut(s) 89, 489, 862
Tsp45I GTSAC 4 cut(s) 347, 634, 904, 953
TspDTI ATGAA 2 cut(s) 17, 904
TspGWI ACGGA 2 cut(s) 335, 436
TspRI CASTG 1 cut(s) 198
Tth111I GACNNNGTC 2 cut(s) 425, 692
Van91I CCANNNNNTGG 1 cut(s) 436
VpaK11BI GGWCC 6 cut(s) 160, 568, 573, 603, 790, 829
ZraI GACGTC 1 cut(s) 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.