Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003505

Physical Location & Seq

Genomic Coordinates Forward (+)

5305549 .. 5307979

Gene Structure 2431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G15650.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGAGCTATTCTCGTCAAAGCATGGGTTCTGGTAGTAGAAGTACAAGGGGCTATGAGTTTGGAAGGACTTATGTTGTGAGGCCTAAAGGAAAGCACCAAGCTACTATTGTTTGGTTGCACGGTCTTGGAGACAATGGCTCCAGCTCGTCTCAGCTATTGGAAAGCCTACCTCTTCCAAACATCAAATGGATTTGTCCAACTGCTCCTTCGCGTCCTGTTTCGCTTCTCGGTGGATTTCCTTGCACTGCCTGGTTTGACGTGGGAGAAATTTCTGAGGATCTTCATGATGATATAGAAGGCTTAGATGCTTCAGCTGCACATATTGCTAACCTATTATCTGCTGAGCCAACAGATGTCAAAGTTGGGATAGGAGGTTTCAGTATGGGTGCAGCAATAGCTCTCTACTCCACGACGTGCTACGCTCTTGGACGTTATGGAACCGGACATGCTTATACTATAAACCTACGAGCTACTGTAGGACTTAGCGGTTGGCTTCCTGGTTGGAGGAGCTTAAGGAGCAAAATAGAAAGTTCGAATGAGGTTGCAAGGCGCGCTGCATCGATACCGATCTTACTTGCACATGGAACTTCGGACGATGTAGTTCCTTATAGATTTGGAGAAAAATCTGCTCATTCACTTGCCATGGCTGGATTCCGACAAACTATGTTCAAACCATATGAAGGGCTTGGTCACTATACGGTTCCTAAAGAAATGGATGAGGTGGTTCACTGGCTCGTCTCAAGGCTTGGTCTCGAGGGTTCGCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Abhydrolase_2

Protein Analysis

255

Amino Acids

27.59

Weight (kDa)

7.79

Isoelectric Point (pI)

48.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_2	PF02230	24 - 264	5.3e-35	Phospholipase/Carboxylesterase
FSH1	PF03959	102 - 223	1.8e-07	Serine hydrolase (FSH1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52700 AT1G52700 AT1G52700 AT1G52700 AT1G52700 AT1G52700 AT3G15650 AT3G15650 AT3G15650
fragaria_vesca	FvH4_6g30430 FvH4_6g30430
malus_domestica	MD09G1221600.v1.1 MD17G1203800.v1.1
prunus_persica	Prupe.3G078700_v2.0.a1 Prupe.3G078700_v2.0.a1 Prupe.3G078700_v2.0.a1 Prupe.3G078700_v2.0.a1 Prupe.3G078700_v2.0.a1 Prupe.3G078700_v2.0.a1 Prupe.3G078700_v2.0.a1
pyrus_communis	pycom17g20740
rosa_chinensis	RchiOBHm_Chr2g0136771
rosa_laevigata	RLG00000019571
rosa_multiflora	Rmu_sc0001299.1_g000019
rosa_roxburghii	Rroxscaffold_2G00108080
rosa_rugosa	Rorug02G0333000 Rorug02G0333000 Rorug02G0333000 Rorug02G0333000 Rorug02G0333100 Rorug02G0333100
rosa_samantha	Rh2BG390500 Rh2CG370300 Rh2DG407100
rosa_wichuraiana	Rw2G031390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	211, 552, 763
AciI	CCGC	1 cut(s)	486
AclWI	GGATC	1 cut(s)	285
AcsI	RAATTY	1 cut(s)	267
AcuI	CTGAAG	1 cut(s)	294
AdeI	CACNNNGTG	1 cut(s)	414
AfaI	GTAC	1 cut(s)	43
AfiI	CCNNNNNNNGG	1 cut(s)	680
AflII	CTTAAG	1 cut(s)	511
AgsI	TTSAA	1 cut(s)	670
AjiI	CACGTC	2 cut(s)	259, 414
AjnI	CCWGG	2 cut(s)	248, 496
AjuI	GAANNNNNNNTTGG	2 cut(s)	190, 222
AluBI	AGCT	8 cut(s)	6, 101, 144, 154, 314, 398, 470, 510
AluI	AGCT	8 cut(s)	6, 101, 144, 154, 314, 398, 470, 510
Alw26I	GTCTC	4 cut(s)	123, 153, 742, 755
AlwI	GGATC	1 cut(s)	285
Ama87I	CYCGRG	1 cut(s)	752
AoxI	GGCC	1 cut(s)	80
ApeKI	GCWGC	3 cut(s)	314, 389, 554
ApoI	RAATTY	1 cut(s)	267
AspLEI	GCGC	2 cut(s)	552, 554
AsuII	TTCGAA	1 cut(s)	533
AvaI	CYCGRG	1 cut(s)	752
BbvI	GCAGC	3 cut(s)	301, 401, 541
BciT130I	CCWGG	2 cut(s)	250, 498
BcoDI	GTCTC	4 cut(s)	123, 153, 742, 755
BfmI	CTRYAG	1 cut(s)	474
BfrI	CTTAAG	1 cut(s)	511
BisI	GCNGC	3 cut(s)	315, 390, 555
BlpI	GCTNAGC	1 cut(s)	342
BlsI	GCNGC	3 cut(s)	316, 391, 556
Bme1390I	CCNGG	2 cut(s)	250, 498
BmeT110I	CYCGRG	1 cut(s)	752
BmgBI	CACGTC	2 cut(s)	259, 414
BmiI	GGNNCC	3 cut(s)	139, 439, 702
BmrFI	CCNGG	2 cut(s)	250, 498
BmsI	GCATC	2 cut(s)	295, 566
BplI	GAGNNNNNCTC	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	124
Bpu1102I	GCTNAGC	1 cut(s)	342
Bpu14I	TTCGAA	1 cut(s)	533
BpuEI	CTTGAG	1 cut(s)	724
Bsa29I	ATCGAT	1 cut(s)	560
BsaBI	GATNNNNATC	1 cut(s)	566
BsaI	GGTCTC	1 cut(s)	755
BsaJI	CCNNGG	1 cut(s)	642
BsaWI	WCCGGW	1 cut(s)	440
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bsc4I	CCNNNNNNNGG	1 cut(s)	680
Bse1I	ACTGG	1 cut(s)	734
Bse8I	GATNNNNATC	1 cut(s)	566
BseBI	CCWGG	2 cut(s)	250, 498
BseCI	ATCGAT	1 cut(s)	560
BseDI	CCNNGG	1 cut(s)	642
BseGI	GGATG	1 cut(s)	721
BseJI	GATNNNNATC	1 cut(s)	566
BseLI	CCNNNNNNNGG	1 cut(s)	680
BseMII	CTCAG	3 cut(s)	164, 264, 333
BseNI	ACTGG	1 cut(s)	734
BsePI	GCGCGC	1 cut(s)	550
BseRI	GAGGAG	1 cut(s)	520
BseXI	GCAGC	3 cut(s)	301, 401, 541
BsgI	GTGCAG	2 cut(s)	300, 408
Bsh1236I	CGCG	3 cut(s)	211, 552, 763
BshFI	GGCC	1 cut(s)	82
BshVI	ATCGAT	1 cut(s)	560
BsiHKCI	CYCGRG	1 cut(s)	752
BsiSI	CCGG	1 cut(s)	441
BslI	CCNNNNNNNGG	1 cut(s)	680
BsmAI	GTCTC	4 cut(s)	123, 153, 742, 755
BsmBI	CGTCTC	2 cut(s)	153, 742
BsnI	GGCC	1 cut(s)	82
Bso31I	GGTCTC	1 cut(s)	755
BsoBI	CYCGRG	1 cut(s)	752
Bsp119I	TTCGAA	1 cut(s)	533
Bsp143I	GATC	2 cut(s)	277, 567
Bsp1720I	GCTNAGC	1 cut(s)	342
Bsp19I	CCATGG	1 cut(s)	642
BspACI	CCGC	1 cut(s)	486
BspANI	GGCC	1 cut(s)	82
BspCNI	CTCAG	3 cut(s)	163, 265, 334
BspDI	ATCGAT	1 cut(s)	560
BspFNI	CGCG	3 cut(s)	211, 552, 763
BspHI	TCATGA	1 cut(s)	283
BspLI	GGNNCC	3 cut(s)	139, 439, 702
BspPI	GGATC	1 cut(s)	285
BspT104I	TTCGAA	1 cut(s)	533
BspTI	CTTAAG	1 cut(s)	511
BspTNI	GGTCTC	1 cut(s)	755
BsrI	ACTGG	1 cut(s)	734
BssECI	CCNNGG	1 cut(s)	642
BssHII	GCGCGC	1 cut(s)	550
BssMI	GATC	2 cut(s)	277, 567
BssT1I	CCWWGG	1 cut(s)	642
Bst2UI	CCWGG	2 cut(s)	250, 498
Bst4CI	ACNGT	3 cut(s)	122, 475, 700
Bst6I	CTCTTC	1 cut(s)	177
BstAFI	CTTAAG	1 cut(s)	511
BstAPI	GCANNNNNTGC	1 cut(s)	323
BstBI	TTCGAA	1 cut(s)	533
BstC8I	GCNNGC	1 cut(s)	552
BstDEI	CTNAG	5 cut(s)	150, 273, 301, 342, 482
BstDSI	CCRYGG	1 cut(s)	642
BstF5I	GGATG	1 cut(s)	721
BstFNI	CGCG	3 cut(s)	211, 552, 763
BstHHI	GCGC	2 cut(s)	552, 554
BstKTI	GATC	2 cut(s)	280, 570
BstMAI	GTCTC	4 cut(s)	123, 153, 742, 755
BstMBI	GATC	2 cut(s)	277, 567
BstMWI	GCNNNNNNNGC	5 cut(s)	314, 323, 395, 516, 551
BstNI	CCWGG	2 cut(s)	250, 498
BstNSI	RCATGY	1 cut(s)	449
BstSCI	CCNGG	2 cut(s)	248, 496
BstSFI	CTRYAG	1 cut(s)	474
BstUI	CGCG	3 cut(s)	211, 552, 763
BstV1I	GCAGC	3 cut(s)	301, 401, 541
BstX2I	RGATCY	1 cut(s)	277
BstYI	RGATCY	1 cut(s)	277
Bsu15I	ATCGAT	1 cut(s)	560
BsuRI	GGCC	1 cut(s)	82
BsuTUI	ATCGAT	1 cut(s)	560
BtgI	CCRYGG	1 cut(s)	642
BtrI	CACGTC	2 cut(s)	259, 414
BtsCI	GGATG	1 cut(s)	721
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	2 cut(s)	243, 727
Cac8I	GCNNGC	1 cut(s)	552
CciI	TCATGA	1 cut(s)	283
CfoI	GCGC	2 cut(s)	552, 554
ClaI	ATCGAT	1 cut(s)	560
CseI	GACGC	1 cut(s)	200
Csp6I	GTAC	1 cut(s)	42
CviAII	CATG	5 cut(s)	22, 284, 446, 581, 643
CviQI	GTAC	1 cut(s)	42
DdeI	CTNAG	5 cut(s)	150, 273, 301, 342, 482
DpnI	GATC	2 cut(s)	279, 569
DpnII	GATC	2 cut(s)	277, 567
DraIII	CACNNNGTG	1 cut(s)	414
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
Eco130I	CCWWGG	1 cut(s)	642
Eco147I	AGGCCT	1 cut(s)	82
Eco31I	GGTCTC	1 cut(s)	755
Eco57I	CTGAAG	1 cut(s)	294
Eco88I	CYCGRG	1 cut(s)	752
EcoRII	CCWGG	2 cut(s)	248, 496
EcoT14I	CCWWGG	1 cut(s)	642
ErhI	CCWWGG	1 cut(s)	642
Esp3I	CGTCTC	2 cut(s)	153, 742
FaeI	CATG	5 cut(s)	25, 287, 449, 584, 646
FatI	CATG	5 cut(s)	21, 283, 445, 580, 642
FauNDI	CATATG	1 cut(s)	676
Fnu4HI	GCNGC	3 cut(s)	315, 390, 555
FokI	GGATG	1 cut(s)	728
Fsp4HI	GCNGC	3 cut(s)	315, 390, 555
GlaI	GCGC	2 cut(s)	551, 553
GluI	GCNGC	3 cut(s)	315, 390, 555
GsuI	CTGGAG	1 cut(s)	124
HaeIII	GGCC	1 cut(s)	82
HapII	CCGG	1 cut(s)	441
HgaI	GACGC	1 cut(s)	200
HhaI	GCGC	2 cut(s)	552, 554
Hin1II	CATG	5 cut(s)	25, 287, 449, 584, 646
Hin6I	GCGC	2 cut(s)	550, 552
HinP1I	GCGC	2 cut(s)	550, 552
HinfI	GANTC	1 cut(s)	651
HpaII	CCGG	1 cut(s)	441
Hpy166II	GTNNAC	1 cut(s)	727
Hpy188I	TCNGA	3 cut(s)	274, 592, 656
Hpy188III	TCNNGA	2 cut(s)	284, 752
Hpy8I	GTNNAC	1 cut(s)	727
Hpy99I	CGWCG	1 cut(s)	415
HpyAV	CCTTC	4 cut(s)	57, 216, 290, 674
HpyCH4III	ACNGT	3 cut(s)	122, 475, 700
HpyCH4IV	ACGT	3 cut(s)	258, 413, 430
HpyCH4V	TGCA	7 cut(s)	118, 243, 317, 389, 545, 557, 578
HpyF10VI	GCNNNNNNNGC	5 cut(s)	314, 323, 395, 516, 551
HpyF3I	CTNAG	5 cut(s)	150, 273, 301, 342, 482
HpySE526I	ACGT	3 cut(s)	258, 413, 430
Hsp92II	CATG	5 cut(s)	25, 287, 449, 584, 646
HspAI	GCGC	2 cut(s)	550, 552
Kzo9I	GATC	2 cut(s)	277, 567
LmnI	GCTCC	4 cut(s)	143, 208, 507, 516
Lsp1109I	GCAGC	3 cut(s)	301, 401, 541
LweI	GCATC	2 cut(s)	295, 566
MaeII	ACGT	3 cut(s)	258, 413, 430
MaeIII	GTNAC	1 cut(s)	689
MalI	GATC	2 cut(s)	279, 569
MboI	GATC	2 cut(s)	277, 567
MboII	GAAGA	2 cut(s)	164, 272
MflI	RGATCY	1 cut(s)	277
MluCI	AATT	1 cut(s)	267
MmeI	TCCRAC	3 cut(s)	221, 482, 679
MnlI	CCTC	8 cut(s)	72, 180, 268, 365, 498, 532, 712, 748
MseI	TTAA	2 cut(s)	512, 766
MspA1I	CMGCKG	1 cut(s)	314
MspCI	CTTAAG	1 cut(s)	511
MspI	CCGG	1 cut(s)	441
MspR9I	CCNGG	2 cut(s)	250, 498
MvaI	CCWGG	2 cut(s)	250, 498
MvnI	CGCG	3 cut(s)	211, 552, 763
MwoI	GCNNNNNNNGC	5 cut(s)	314, 323, 395, 516, 551
NcoI	CCATGG	1 cut(s)	642
NdeI	CATATG	1 cut(s)	676
NdeII	GATC	2 cut(s)	277, 567
NlaIII	CATG	5 cut(s)	25, 287, 449, 584, 646
NlaIV	GGNNCC	3 cut(s)	139, 439, 702
NmuCI	GTSAC	1 cut(s)	689
NspI	RCATGY	1 cut(s)	449
NspV	TTCGAA	1 cut(s)	533
PaeR7I	CTCGAG	1 cut(s)	752
PagI	TCATGA	1 cut(s)	283
PauI	GCGCGC	1 cut(s)	550
PceI	AGGCCT	1 cut(s)	82
PfeI	GAWTC	1 cut(s)	651
PkrI	GCNGC	3 cut(s)	316, 391, 556
Psp6I	CCWGG	2 cut(s)	248, 496
PspGI	CCWGG	2 cut(s)	248, 496
PspN4I	GGNNCC	3 cut(s)	139, 439, 702
PsuI	RGATCY	1 cut(s)	277
PteI	GCGCGC	1 cut(s)	550
PvuII	CAGCTG	1 cut(s)	314
RsaI	GTAC	1 cut(s)	43
RsaNI	GTAC	1 cut(s)	42
SaqAI	TTAA	2 cut(s)	512, 766
SatI	GCNGC	3 cut(s)	315, 390, 555
Sau3AI	GATC	2 cut(s)	277, 567
ScrFI	CCNGG	2 cut(s)	250, 498
SfaNI	GCATC	2 cut(s)	295, 566
SfcI	CTRYAG	1 cut(s)	474
Sfr274I	CTCGAG	1 cut(s)	752
SfuI	TTCGAA	1 cut(s)	533
SlaI	CTCGAG	1 cut(s)	752
SmlI	CTYRAG	3 cut(s)	511, 739, 752
SmoI	CTYRAG	3 cut(s)	511, 739, 752
Sse9I	AATT	1 cut(s)	267
SseBI	AGGCCT	1 cut(s)	82
SsiI	CCGC	1 cut(s)	486
StuI	AGGCCT	1 cut(s)	82
StyD4I	CCNGG	2 cut(s)	248, 496
StyI	CCWWGG	1 cut(s)	642
TaaI	ACNGT	3 cut(s)	122, 475, 700
TaiI	ACGT	3 cut(s)	261, 416, 433
TaqI	TCGA	3 cut(s)	533, 560, 753
TasI	AATT	1 cut(s)	267
TatI	WGTACW	1 cut(s)	41
TfiI	GAWTC	1 cut(s)	651
Tru1I	TTAA	2 cut(s)	512, 766
Tru9I	TTAA	2 cut(s)	512, 766
TscAI	CASTG	2 cut(s)	250, 734
TseFI	GTSAC	1 cut(s)	689
TseI	GCWGC	3 cut(s)	314, 389, 554
Tsp45I	GTSAC	1 cut(s)	689
TspDTI	ATGAA	2 cut(s)	272, 693
TspRI	CASTG	2 cut(s)	250, 734
Vha464I	CTTAAG	1 cut(s)	511
XapI	RAATTY	1 cut(s)	267
XceI	RCATGY	1 cut(s)	449
XcmI	CCANNNNNNNNNTGG	1 cut(s)	183
XhoI	CTCGAG	1 cut(s)	752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.