Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003505

Physical Location & Seq

Genomic Coordinates Forward (+)

5823454 .. 5828692

Gene Structure 5239 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G078700.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGAGCTATTCCCATTCCAATATGTGTTCTGGTAGCAGAACTGCTAAAAGAACACTTGAGTTCGGTAGGACACATGTGGTGAGGCCCAAAGGAAAGCATCAAGCCACAATAGTCTGGCTACATGGACTTGGGGATAATGGCTCAAGCGCTTCTCAACTCTTGGAGTCTCTTCCTCTTCCAAATATTAAGTGGATCTGCCCCACTGCTCCTACCCGTCCTGTGGCTATACTCGGTGGTTTTCCTTGCACTGCCTGGTTTGAAATGGGAGAGCTTTCAGACGATGGTCCAGATGATTGGGAGAGTTTAGATGCTTCAGCAGCACATATTGCGAACTTGTTGTCAACTGAGCCAGCTGATGTTAAAGTCGGTATTGGAGGCTTTAGTATGGGTGCTGCGATGGCCCTTTATTCTGCAACTTGTTATGCTGCAGGTAGGTATGGAAATGGCAACCCATACCCTCTCAATCTGAGGGCAGTTGTTGGACTAAGTGGTTGGCTTCCAGGAGCAAGGACCTTACGGAACAAAATTGAAGGGTCACATGAGGCTGCAAGGCGTGCCGCATCATTACCCATTTTGCAATGTCATGGAAAAAATGATGATGTAGTCCCTTACAAATATGGAGAGAAATCAGTCAACTCCTTGAATTCAGCAGGATTCCGATACCTTACGTTCAAACCCCTTGATGGGCTTGGTCATTACACTATCCCTAAAGAGATGAATGAAGTCTCCAGTTGGCTATCTGCAAGGCTGGGGCTTGAGGGGTACCGCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0002084 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0006928 GO:0006935 GO:0007275 GO:0007399 GO:0007409 GO:0007411 GO:0008150 GO:0008152 GO:0008474 GO:0009056 GO:0009057 GO:0009605 GO:0009653 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016790 GO:0019538 GO:0022008 GO:0030030 GO:0030154 GO:0030163 GO:0030182 GO:0031175 GO:0032501 GO:0032502 GO:0032989 GO:0032990 GO:0035601 GO:0036211 GO:0040011 GO:0042157 GO:0042159 GO:0042221 GO:0042330 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048468 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0050896 GO:0052689 GO:0061564 GO:0071704 GO:0071840 GO:0097485 GO:0098599 GO:0098732 GO:0098734 GO:0120036 GO:0120039 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Abhydrolase_2

Protein Analysis

258

Amino Acids

27.68

Weight (kDa)

8.55

Isoelectric Point (pI)

39.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52700 AT1G52700 AT1G52700 AT1G52700 AT1G52700 AT1G52700 AT3G15650 AT3G15650 AT3G15650
fragaria_vesca	FvH4_6g30430 FvH4_6g30430
malus_domestica	MD09G1221600.v1.1 MD17G1203800.v1.1
prunus_persica	Prupe.3G078700_v2.0.a1 Prupe.3G078700_v2.0.a1 Prupe.3G078700_v2.0.a1 Prupe.3G078700_v2.0.a1 Prupe.3G078700_v2.0.a1 Prupe.3G078700_v2.0.a1 Prupe.3G078700_v2.0.a1
pyrus_communis	pycom17g20740
rosa_chinensis	RchiOBHm_Chr2g0136771
rosa_laevigata	RLG00000019571
rosa_multiflora	Rmu_sc0001299.1_g000019
rosa_roxburghii	Rroxscaffold_2G00108080
rosa_rugosa	Rorug02G0333000 Rorug02G0333000 Rorug02G0333000 Rorug02G0333000 Rorug02G0333100 Rorug02G0333100
rosa_samantha	Rh2BG390500 Rh2CG370300 Rh2DG407100
rosa_wichuraiana	Rw2G031390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	419
Acc65I	GGTACC	1 cut(s)	762
AccB1I	GGYRCC	1 cut(s)	762
AccBSI	CCGCTC	1 cut(s)	768
AciI	CCGC	2 cut(s)	558, 766
AclWI	GGATC	1 cut(s)	200
AcsI	RAATTY	1 cut(s)	643
AcuI	CTGAAG	1 cut(s)	297
AfaI	GTAC	1 cut(s)	764
AfeI	AGCGCT	1 cut(s)	148
AfiI	CCNNNNNNNGG	3 cut(s)	220, 683, 684
AflIII	ACRYGT	1 cut(s)	73
AgsI	TTSAA	4 cut(s)	260, 530, 643, 673
AjnI	CCWGG	2 cut(s)	251, 499
AluBI	AGCT	3 cut(s)	6, 271, 353
AluI	AGCT	3 cut(s)	6, 271, 353
Alw26I	GTCTC	2 cut(s)	171, 730
AlwI	GGATC	1 cut(s)	200
Aor51HI	AGCGCT	1 cut(s)	148
AoxI	GGCC	2 cut(s)	83, 399
ApeKI	GCWGC	4 cut(s)	317, 392, 425, 545
ApoI	RAATTY	1 cut(s)	643
ArsI	GACNNNNNNTTYG	2 cut(s)	323, 355
Asp718I	GGTACC	1 cut(s)	762
AspLEI	GCGC	1 cut(s)	149
AspS9I	GGNCC	4 cut(s)	84, 284, 400, 510
AsuHPI	GGTGA	1 cut(s)	91
AvaII	GGWCC	2 cut(s)	284, 510
BanI	GGYRCC	1 cut(s)	762
BbvI	GCAGC	4 cut(s)	329, 379, 412, 532
BccI	CCATC	3 cut(s)	275, 391, 677
BciT130I	CCWGG	2 cut(s)	253, 501
BcoDI	GTCTC	2 cut(s)	171, 730
BfmI	CTRYAG	1 cut(s)	426
BfoI	RGCGCY	1 cut(s)	150
BfuAI	ACCTGC	1 cut(s)	419
BisI	GCNGC	5 cut(s)	318, 393, 426, 546, 558
BlsI	GCNGC	5 cut(s)	319, 394, 427, 547, 559
Bme1390I	CCNGG	2 cut(s)	253, 501
Bme18I	GGWCC	2 cut(s)	284, 510
BmgT120I	GGNCC	4 cut(s)	84, 284, 400, 510
BmiI	GGNNCC	1 cut(s)	764
BmrFI	CCNGG	2 cut(s)	253, 501
BmsI	GCATC	3 cut(s)	106, 298, 569
BoxI	GACNNNNGTC	1 cut(s)	282
BpmI	CTGGAG	1 cut(s)	712
BpuEI	CTTGAG	2 cut(s)	77, 127
Bsc4I	CCNNNNNNNGG	3 cut(s)	220, 683, 684
Bse1I	ACTGG	1 cut(s)	729
Bse3DI	GCAATG	1 cut(s)	584
BseBI	CCWGG	2 cut(s)	253, 501
BseLI	CCNNNNNNNGG	3 cut(s)	220, 683, 684
BseMI	GCAATG	1 cut(s)	584
BseMII	CTCAG	2 cut(s)	336, 458
BseNI	ACTGG	1 cut(s)	729
BseXI	GCAGC	4 cut(s)	329, 379, 412, 532
BseYI	CCCAGC	1 cut(s)	748
BshFI	GGCC	2 cut(s)	85, 401
BshNI	GGYRCC	1 cut(s)	762
BslFI	GGGAC	1 cut(s)	590
BslI	CCNNNNNNNGG	3 cut(s)	220, 683, 684
BsmAI	GTCTC	2 cut(s)	171, 730
BsmFI	GGGAC	1 cut(s)	590
BsnI	GGCC	2 cut(s)	85, 401
Bsp143I	GATC	1 cut(s)	192
BspACI	CCGC	2 cut(s)	558, 766
BspANI	GGCC	2 cut(s)	85, 401
BspCNI	CTCAG	2 cut(s)	337, 459
BspLI	GGNNCC	1 cut(s)	764
BspMAI	CTGCAG	1 cut(s)	430
BspMI	ACCTGC	1 cut(s)	419
BspPI	GGATC	1 cut(s)	200
BspT107I	GGYRCC	1 cut(s)	762
BsrBI	CCGCTC	1 cut(s)	768
BsrDI	GCAATG	1 cut(s)	584
BsrI	ACTGG	1 cut(s)	729
BssMI	GATC	1 cut(s)	192
Bst2UI	CCWGG	2 cut(s)	253, 501
Bst6I	CTCTTC	2 cut(s)	174, 180
BstAPI	GCANNNNNTGC	2 cut(s)	326, 554
BstC8I	GCNNGC	2 cut(s)	351, 555
BstDEI	CTNAG	3 cut(s)	345, 467, 485
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	1 cut(s)	195
BstMAI	GTCTC	2 cut(s)	171, 730
BstMBI	GATC	1 cut(s)	192
BstMWI	GCNNNNNNNGC	4 cut(s)	317, 326, 398, 554
BstNI	CCWGG	2 cut(s)	253, 501
BstNSI	RCATGY	1 cut(s)	77
BstPAI	GACNNNNGTC	1 cut(s)	282
BstSCI	CCNGG	2 cut(s)	251, 499
BstSFI	CTRYAG	1 cut(s)	426
BstV1I	GCAGC	4 cut(s)	329, 379, 412, 532
BstX2I	RGATCY	1 cut(s)	192
BstXI	CCANNNNNNTGG	1 cut(s)	294
BstYI	RGATCY	1 cut(s)	192
BsuRI	GGCC	2 cut(s)	85, 401
BtgZI	GCGATG	1 cut(s)	410
BtsI	GCAGTG	2 cut(s)	201, 246
BtsIMutI	CAGTG	2 cut(s)	201, 246
BveI	ACCTGC	1 cut(s)	419
Cac8I	GCNNGC	2 cut(s)	351, 555
CfoI	GCGC	1 cut(s)	149
Cfr13I	GGNCC	4 cut(s)	84, 284, 400, 510
Csp6I	GTAC	1 cut(s)	763
CviAII	CATG	4 cut(s)	74, 122, 539, 584
CviQI	GTAC	1 cut(s)	763
DdeI	CTNAG	3 cut(s)	345, 467, 485
DpnI	GATC	1 cut(s)	194
DpnII	GATC	1 cut(s)	192
Eam1104I	CTCTTC	2 cut(s)	174, 180
EarI	CTCTTC	2 cut(s)	174, 180
Eco47I	GGWCC	2 cut(s)	284, 510
Eco47III	AGCGCT	1 cut(s)	148
Eco57I	CTGAAG	1 cut(s)	297
EcoO109I	RGGNCCY	1 cut(s)	510
EcoRI	GAATTC	1 cut(s)	643
EcoRII	CCWGG	2 cut(s)	251, 499
FaeI	CATG	4 cut(s)	77, 125, 542, 587
FaqI	GGGAC	1 cut(s)	590
FatI	CATG	4 cut(s)	73, 121, 538, 583
Fnu4HI	GCNGC	5 cut(s)	318, 393, 426, 546, 558
Fsp4HI	GCNGC	5 cut(s)	318, 393, 426, 546, 558
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	5 cut(s)	318, 393, 426, 546, 558
GsaI	CCCAGC	1 cut(s)	752
GsuI	CTGGAG	1 cut(s)	712
HaeII	RGCGCY	1 cut(s)	150
HaeIII	GGCC	2 cut(s)	85, 401
HhaI	GCGC	1 cut(s)	149
Hin1II	CATG	4 cut(s)	77, 125, 542, 587
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HincII	GTYRAC	2 cut(s)	342, 634
HindII	GTYRAC	2 cut(s)	342, 634
HinfI	GANTC	2 cut(s)	164, 654
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	2 cut(s)	342, 634
Hpy188I	TCNGA	3 cut(s)	277, 468, 659
Hpy188III	TCNNGA	1 cut(s)	287
Hpy8I	GTNNAC	2 cut(s)	342, 634
HpyAV	CCTTC	1 cut(s)	524
HpyCH4IV	ACGT	1 cut(s)	668
HpyCH4V	TGCA	6 cut(s)	246, 413, 428, 548, 577, 743
HpyF10VI	GCNNNNNNNGC	4 cut(s)	317, 326, 398, 554
HpyF3I	CTNAG	3 cut(s)	345, 467, 485
HpySE526I	ACGT	1 cut(s)	668
Hsp92II	CATG	4 cut(s)	77, 125, 542, 587
HspAI	GCGC	1 cut(s)	147
KpnI	GGTACC	1 cut(s)	766
Kzo9I	GATC	1 cut(s)	192
LmnI	GCTCC	2 cut(s)	211, 503
Lsp1109I	GCAGC	4 cut(s)	329, 379, 412, 532
LweI	GCATC	3 cut(s)	106, 298, 569
MaeII	ACGT	1 cut(s)	668
MaeIII	GTNAC	1 cut(s)	534
MalI	GATC	1 cut(s)	194
MbiI	CCGCTC	1 cut(s)	768
MboI	GATC	1 cut(s)	192
MboII	GAAGA	2 cut(s)	161, 167
MflI	RGATCY	1 cut(s)	192
MluCI	AATT	2 cut(s)	525, 643
MlyI	GAGTC	1 cut(s)	173
MmeI	TCCRAC	1 cut(s)	460
MnlI	CCTC	7 cut(s)	75, 183, 368, 462, 468, 535, 751
MseI	TTAA	2 cut(s)	186, 360
MspA1I	CMGCKG	1 cut(s)	353
MspR9I	CCNGG	2 cut(s)	253, 501
MvaI	CCWGG	2 cut(s)	253, 501
MwoI	GCNNNNNNNGC	4 cut(s)	317, 326, 398, 554
NdeII	GATC	1 cut(s)	192
NlaIII	CATG	4 cut(s)	77, 125, 542, 587
NlaIV	GGNNCC	1 cut(s)	764
NmuCI	GTSAC	1 cut(s)	534
NspI	RCATGY	1 cut(s)	77
PciI	ACATGT	1 cut(s)	73
PfeI	GAWTC	1 cut(s)	654
PfoI	TCCNGGA	1 cut(s)	499
PkrI	GCNGC	5 cut(s)	319, 394, 427, 547, 559
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
PpuMI	RGGWCCY	1 cut(s)	510
PscI	ACATGT	1 cut(s)	73
PshAI	GACNNNNGTC	1 cut(s)	282
Psp5II	RGGWCCY	1 cut(s)	510
Psp6I	CCWGG	2 cut(s)	251, 499
PspFI	CCCAGC	1 cut(s)	748
PspGI	CCWGG	2 cut(s)	251, 499
PspN4I	GGNNCC	1 cut(s)	764
PspPI	GGNCC	4 cut(s)	84, 284, 400, 510
PspPPI	RGGWCCY	1 cut(s)	510
PstI	CTGCAG	1 cut(s)	430
PsuI	RGATCY	1 cut(s)	192
PvuII	CAGCTG	1 cut(s)	353
RsaI	GTAC	1 cut(s)	764
RsaNI	GTAC	1 cut(s)	763
SaqAI	TTAA	2 cut(s)	186, 360
SatI	GCNGC	5 cut(s)	318, 393, 426, 546, 558
Sau3AI	GATC	1 cut(s)	192
Sau96I	GGNCC	4 cut(s)	84, 284, 400, 510
SchI	GAGTC	1 cut(s)	173
ScrFI	CCNGG	2 cut(s)	253, 501
SetI	ASST	8 cut(s)	8, 273, 355, 433, 437, 515, 666, 671
SfaNI	GCATC	3 cut(s)	106, 298, 569
SfcI	CTRYAG	1 cut(s)	426
SinI	GGWCC	2 cut(s)	284, 510
SmlI	CTYRAG	3 cut(s)	56, 142, 755
SmoI	CTYRAG	3 cut(s)	56, 142, 755
Sse9I	AATT	2 cut(s)	525, 643
SsiI	CCGC	2 cut(s)	558, 766
SspI	AATATT	1 cut(s)	184
StyD4I	CCNGG	2 cut(s)	251, 499
TaiI	ACGT	1 cut(s)	671
TasI	AATT	2 cut(s)	525, 643
TauI	GCSGC	1 cut(s)	560
TfiI	GAWTC	1 cut(s)	654
Tru1I	TTAA	2 cut(s)	186, 360
Tru9I	TTAA	2 cut(s)	186, 360
TscAI	CASTG	2 cut(s)	208, 253
TseFI	GTSAC	1 cut(s)	534
TseI	GCWGC	4 cut(s)	317, 392, 425, 545
Tsp45I	GTSAC	1 cut(s)	534
TspDTI	ATGAA	2 cut(s)	731, 735
TspGWI	ACGGA	1 cut(s)	532
TspRI	CASTG	2 cut(s)	208, 253
VpaK11BI	GGWCC	2 cut(s)	284, 510
XapI	RAATTY	1 cut(s)	643
XceI	RCATGY	1 cut(s)	77
XcmI	CCANNNNNNNNNTGG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.