Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003505

Physical Location & Seq

Genomic Coordinates Reverse (-)

59037856 .. 59041501

Gene Structure 3646 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG407100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGTCTGGCTACACGGACTGGGGGACAATGGCTCAAGTGCATCTCAGCTATTGGAATCTCTCTCTCTCCCAAATATAAAATGGATCTGTCCAACTGCTCCTACTCGTCCTGTGGCTATACTTGGTGGTTATTCTTGCACTGCATGGTTTGAAGTGGGAGAACTATCAGAAGATGGCCCAGATGACTGGGAGAGTTTAGATGCTTCAGCAGCACATATTGTGAACTTGTTGGCAGCTGAGCCAGCTGATGTTAAAGTCGGTATTGGAGGCTTTAGTATGGGTGCTGCAATGGCCCTTTATTCTGCAACTTGTTTTGCTATGGGTAGGTATGGAAATGGCAATCCATACCCTCTCAATCTGAGGGCAGTTGTTGGACTTAGTGGCTGGCTTCCTGGAGCAAGGAGCTTGAGAAACAAAATAGAAGGGTCACATGAGGCTGCAAGGCGTGCTGCATCGTTACCCATTCTGCAGTGCCATGGAAATGCTGATGATGTTGTCCCCTACAAGTATGGAGAGAAATCGTTCCAGAGTTTGAATTCAGCAGGATTTCGATTCCTCACATTCAAACCCTTTGATGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0002084 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0006928 GO:0006935 GO:0007275 GO:0007399 GO:0007409 GO:0007411 GO:0008150 GO:0008152 GO:0008474 GO:0009056 GO:0009057 GO:0009605 GO:0009653 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016790 GO:0019538 GO:0022008 GO:0030030 GO:0030154 GO:0030163 GO:0030182 GO:0031175 GO:0032501 GO:0032502 GO:0032989 GO:0032990 GO:0035601 GO:0036211 GO:0040011 GO:0042157 GO:0042159 GO:0042221 GO:0042330 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048468 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0050896 GO:0052689 GO:0061564 GO:0071704 GO:0071840 GO:0097485 GO:0098599 GO:0098732 GO:0098734 GO:0120036 GO:0120039 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Abhydrolase_2

Protein Analysis

193

Amino Acids

20.51

Weight (kDa)

5.51

Isoelectric Point (pI)

45.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_2	PF02230	2 - 181	1.2e-30	Phospholipase/Carboxylesterase
FSH1	PF03959	47 - 169	5.4e-09	Serine hydrolase (FSH1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52700 AT1G52700 AT1G52700 AT1G52700 AT1G52700 AT1G52700 AT3G15650 AT3G15650 AT3G15650
fragaria_vesca	FvH4_6g30430 FvH4_6g30430
malus_domestica	MD09G1221600.v1.1 MD17G1203800.v1.1
prunus_persica	Prupe.3G078700_v2.0.a1 Prupe.3G078700_v2.0.a1 Prupe.3G078700_v2.0.a1 Prupe.3G078700_v2.0.a1 Prupe.3G078700_v2.0.a1 Prupe.3G078700_v2.0.a1 Prupe.3G078700_v2.0.a1
pyrus_communis	pycom17g20740
rosa_chinensis	RchiOBHm_Chr2g0136771
rosa_laevigata	RLG00000019571
rosa_multiflora	Rmu_sc0001299.1_g000019
rosa_roxburghii	Rroxscaffold_2G00108080
rosa_rugosa	Rorug02G0333000 Rorug02G0333000 Rorug02G0333000 Rorug02G0333000 Rorug02G0333100 Rorug02G0333100
rosa_samantha	Rh2BG390500 Rh2CG370300 Rh2DG407100
rosa_wichuraiana	Rw2G031390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	92
AcsI	RAATTY	1 cut(s)	535
AcuI	CTGAAG	1 cut(s)	189
AfiI	CCNNNNNNNGG	2 cut(s)	575, 576
AgsI	TTSAA	3 cut(s)	152, 535, 565
AjnI	CCWGG	1 cut(s)	391
AluBI	AGCT	4 cut(s)	49, 236, 245, 405
AluI	AGCT	4 cut(s)	49, 236, 245, 405
AlwI	GGATC	1 cut(s)	92
AoxI	GGCC	2 cut(s)	175, 291
ApeKI	GCWGC	5 cut(s)	209, 233, 284, 437, 449
ApoI	RAATTY	1 cut(s)	535
Asp700I	GAANNNNTTC	1 cut(s)	521
AspS9I	GGNCC	2 cut(s)	176, 292
BbvI	GCAGC	5 cut(s)	221, 245, 271, 424, 436
BccI	CCATC	2 cut(s)	167, 569
BciT130I	CCWGG	1 cut(s)	393
BfmI	CTRYAG	1 cut(s)	467
BisI	GCNGC	5 cut(s)	210, 234, 285, 438, 450
BlpI	GCTNAGC	1 cut(s)	237
BlsI	GCNGC	5 cut(s)	211, 235, 286, 439, 451
Bme1390I	CCNGG	1 cut(s)	393
BmgT120I	GGNCC	2 cut(s)	176, 292
BmrFI	CCNGG	1 cut(s)	393
BmrI	ACTGGG	2 cut(s)	29, 196
BmsI	GCATC	3 cut(s)	50, 190, 461
BmuI	ACTGGG	2 cut(s)	29, 196
BpmI	CTGGAG	1 cut(s)	414
Bpu1102I	GCTNAGC	1 cut(s)	237
BpuEI	CTTGAG	2 cut(s)	19, 427
BsaJI	CCNNGG	1 cut(s)	475
Bsc4I	CCNNNNNNNGG	2 cut(s)	575, 576
Bse1I	ACTGG	2 cut(s)	24, 191
Bse3DI	GCAATG	1 cut(s)	294
BseBI	CCWGG	1 cut(s)	393
BseDI	CCNNGG	1 cut(s)	475
BseLI	CCNNNNNNNGG	2 cut(s)	575, 576
BseMI	GCAATG	1 cut(s)	294
BseMII	CTCAG	3 cut(s)	59, 228, 350
BseNI	ACTGG	2 cut(s)	24, 191
BseXI	GCAGC	5 cut(s)	221, 245, 271, 424, 436
BshFI	GGCC	2 cut(s)	177, 293
BslFI	GGGAC	2 cut(s)	38, 482
BslI	CCNNNNNNNGG	2 cut(s)	575, 576
BsmFI	GGGAC	2 cut(s)	38, 482
BsnI	GGCC	2 cut(s)	177, 293
Bsp143I	GATC	1 cut(s)	84
Bsp1720I	GCTNAGC	1 cut(s)	237
Bsp19I	CCATGG	1 cut(s)	475
BspANI	GGCC	2 cut(s)	177, 293
BspCNI	CTCAG	3 cut(s)	58, 229, 351
BspMAI	CTGCAG	1 cut(s)	471
BspPI	GGATC	1 cut(s)	92
BsrDI	GCAATG	1 cut(s)	294
BsrI	ACTGG	2 cut(s)	24, 191
BssECI	CCNNGG	1 cut(s)	475
BssMI	GATC	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	475
Bst2UI	CCWGG	1 cut(s)	393
BstAPI	GCANNNNNTGC	1 cut(s)	446
BstC8I	GCNNGC	3 cut(s)	243, 386, 447
BstDEI	CTNAG	4 cut(s)	45, 237, 359, 377
BstDSI	CCRYGG	1 cut(s)	475
BstKTI	GATC	1 cut(s)	87
BstMBI	GATC	1 cut(s)	84
BstMWI	GCNNNNNNNGC	4 cut(s)	209, 242, 290, 446
BstNI	CCWGG	1 cut(s)	393
BstSCI	CCNGG	1 cut(s)	391
BstSFI	CTRYAG	1 cut(s)	467
BstV1I	GCAGC	5 cut(s)	221, 245, 271, 424, 436
BstX2I	RGATCY	1 cut(s)	84
BstXI	CCANNNNNNTGG	1 cut(s)	186
BstYI	RGATCY	1 cut(s)	84
BsuRI	GGCC	2 cut(s)	177, 293
BtgI	CCRYGG	1 cut(s)	475
BtsI	GCAGTG	2 cut(s)	138, 476
BtsIMutI	CAGTG	2 cut(s)	138, 476
Cac8I	GCNNGC	3 cut(s)	243, 386, 447
Cfr13I	GGNCC	2 cut(s)	176, 292
CviAII	CATG	3 cut(s)	144, 431, 476
DdeI	CTNAG	4 cut(s)	45, 237, 359, 377
DpnI	GATC	1 cut(s)	86
DpnII	GATC	1 cut(s)	84
Eco130I	CCWWGG	1 cut(s)	475
Eco57I	CTGAAG	1 cut(s)	189
EcoRI	GAATTC	1 cut(s)	535
EcoRII	CCWGG	1 cut(s)	391
EcoT14I	CCWWGG	1 cut(s)	475
ErhI	CCWWGG	1 cut(s)	475
FaeI	CATG	3 cut(s)	147, 434, 479
FaqI	GGGAC	2 cut(s)	38, 482
FatI	CATG	3 cut(s)	143, 430, 475
Fnu4HI	GCNGC	5 cut(s)	210, 234, 285, 438, 450
Fsp4HI	GCNGC	5 cut(s)	210, 234, 285, 438, 450
GluI	GCNGC	5 cut(s)	210, 234, 285, 438, 450
GsuI	CTGGAG	1 cut(s)	414
HaeIII	GGCC	2 cut(s)	177, 293
Hin1II	CATG	3 cut(s)	147, 434, 479
HinfI	GANTC	2 cut(s)	56, 552
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	2 cut(s)	169, 360
Hpy188III	TCNNGA	1 cut(s)	526
Hpy8I	GTNNAC	1 cut(s)	223
HpyAV	CCTTC	1 cut(s)	416
HpyCH4V	TGCA	8 cut(s)	41, 138, 143, 287, 305, 440, 452, 469
HpyF10VI	GCNNNNNNNGC	4 cut(s)	209, 242, 290, 446
HpyF3I	CTNAG	4 cut(s)	45, 237, 359, 377
Hsp92II	CATG	3 cut(s)	147, 434, 479
Kzo9I	GATC	1 cut(s)	84
LmnI	GCTCC	3 cut(s)	103, 395, 402
Lsp1109I	GCAGC	5 cut(s)	221, 245, 271, 424, 436
LweI	GCATC	3 cut(s)	50, 190, 461
MaeIII	GTNAC	2 cut(s)	426, 456
MalI	GATC	1 cut(s)	86
MboI	GATC	1 cut(s)	84
MboII	GAAGA	1 cut(s)	182
MflI	RGATCY	1 cut(s)	84
MluCI	AATT	1 cut(s)	535
MmeI	TCCRAC	2 cut(s)	116, 352
MnlI	CCTC	5 cut(s)	260, 354, 360, 427, 566
MroXI	GAANNNNTTC	1 cut(s)	521
MseI	TTAA	1 cut(s)	252
MslI	CAYNNNNRTG	1 cut(s)	480
MspA1I	CMGCKG	2 cut(s)	236, 245
MspR9I	CCNGG	1 cut(s)	393
MvaI	CCWGG	1 cut(s)	393
MwoI	GCNNNNNNNGC	4 cut(s)	209, 242, 290, 446
NcoI	CCATGG	1 cut(s)	475
NdeII	GATC	1 cut(s)	84
NlaIII	CATG	3 cut(s)	147, 434, 479
NmuCI	GTSAC	1 cut(s)	426
PdmI	GAANNNNTTC	1 cut(s)	521
PfeI	GAWTC	2 cut(s)	56, 552
PfoI	TCCNGGA	1 cut(s)	391
PkrI	GCNGC	5 cut(s)	211, 235, 286, 439, 451
Psp6I	CCWGG	1 cut(s)	391
PspGI	CCWGG	1 cut(s)	391
PspPI	GGNCC	2 cut(s)	176, 292
PstI	CTGCAG	1 cut(s)	471
PsuI	RGATCY	1 cut(s)	84
PvuII	CAGCTG	2 cut(s)	236, 245
RseI	CAYNNNNRTG	1 cut(s)	480
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	5 cut(s)	210, 234, 285, 438, 450
Sau3AI	GATC	1 cut(s)	84
Sau96I	GGNCC	2 cut(s)	176, 292
ScrFI	CCNGG	1 cut(s)	393
SetI	ASST	5 cut(s)	51, 238, 247, 329, 407
SfaNI	GCATC	3 cut(s)	50, 190, 461
SfcI	CTRYAG	1 cut(s)	467
SmiMI	CAYNNNNRTG	1 cut(s)	480
SmlI	CTYRAG	2 cut(s)	34, 406
SmoI	CTYRAG	2 cut(s)	34, 406
Sse9I	AATT	1 cut(s)	535
StyD4I	CCNGG	1 cut(s)	391
StyI	CCWWGG	1 cut(s)	475
TaqI	TCGA	1 cut(s)	550
TasI	AATT	1 cut(s)	535
TfiI	GAWTC	2 cut(s)	56, 552
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TscAI	CASTG	2 cut(s)	145, 476
TseFI	GTSAC	1 cut(s)	426
TseI	GCWGC	5 cut(s)	209, 233, 284, 437, 449
Tsp45I	GTSAC	1 cut(s)	426
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	2 cut(s)	145, 476
XapI	RAATTY	1 cut(s)	535
XcmI	CCANNNNNNNNNTGG	1 cut(s)	78
XmnI	GAANNNNTTC	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.