Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001299.1

Orthogroup ID

OG0003505

Physical Location & Seq

Genomic Coordinates Forward (+)

110596 .. 113627

Gene Structure 3032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001299.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

atgtcttctggtagcagaactgctcgaagaacactcgagtttggaaggacacatgttgtgaggcccagagggaaacatcaggcaacaatggtctggctacacggactgggggacaatggctcaagtgcatctcagctattggaatctctctctctcccaaatataaaatggatctgtccaactgctcctactcgtcctgtggctatacttggtggttattcttgcactgcatggtttgaagtgggagaactatcagaagatggcccagatgactgggagagtttagatgcttcagcagcacatattgtgaacttgttggcagctgagccagctgatgttaaagtcggtattggaggctttagtatgggtgctgcaatggccctttattctgcaacttgttatgctatgggtaggtatggaaatggcaatccataccctctcaatctgagggcagttgttggacttagtggctggcttccaggagcaaggagcttgagaaacaaaatagaagggtcacatgaggctgcaaggcgtgctgcatcgttacccattctgcagtgccatggaaatgctgatgatgttgtcccctacaagtatggagagaaatcgttccagagtttgaattcagcaggatttcgattcctcacattcaaaccctttgatgggcttggccattatacagtccctaaagagatgaatgaggtctccaattggcttactgcaaggctagggctagagggttaccgctcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0002084 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0006928 GO:0006935 GO:0007275 GO:0007399 GO:0007409 GO:0007411 GO:0008150 GO:0008152 GO:0008474 GO:0009056 GO:0009057 GO:0009605 GO:0009653 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016790 GO:0019538 GO:0022008 GO:0030030 GO:0030154 GO:0030163 GO:0030182 GO:0031175 GO:0032501 GO:0032502 GO:0032989 GO:0032990 GO:0035601 GO:0036211 GO:0040011 GO:0042157 GO:0042159 GO:0042221 GO:0042330 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048468 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0050896 GO:0052689 GO:0061564 GO:0071704 GO:0071840 GO:0097485 GO:0098599 GO:0098732 GO:0098734 GO:0120036 GO:0120039 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Abhydrolase_2

Protein Analysis

250

Amino Acids

26.99

Weight (kDa)

8.34

Isoelectric Point (pI)

46.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52700 AT1G52700 AT1G52700 AT1G52700 AT1G52700 AT1G52700 AT3G15650 AT3G15650 AT3G15650
fragaria_vesca	FvH4_6g30430 FvH4_6g30430
malus_domestica	MD09G1221600.v1.1 MD17G1203800.v1.1
prunus_persica	Prupe.3G078700_v2.0.a1 Prupe.3G078700_v2.0.a1 Prupe.3G078700_v2.0.a1 Prupe.3G078700_v2.0.a1 Prupe.3G078700_v2.0.a1 Prupe.3G078700_v2.0.a1 Prupe.3G078700_v2.0.a1
pyrus_communis	pycom17g20740
rosa_chinensis	RchiOBHm_Chr2g0136771
rosa_laevigata	RLG00000019571
rosa_multiflora	Rmu_sc0001299.1_g000019
rosa_roxburghii	Rroxscaffold_2G00108080
rosa_rugosa	Rorug02G0333000 Rorug02G0333000 Rorug02G0333000 Rorug02G0333000 Rorug02G0333100 Rorug02G0333100
rosa_samantha	Rh2BG390500 Rh2CG370300 Rh2DG407100
rosa_wichuraiana	Rw2G031390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	747
AciI	CCGC	1 cut(s)	745
AclWI	GGATC	1 cut(s)	179
AcoI	YGGCCR	1 cut(s)	670
AcsI	RAATTY	1 cut(s)	622
AcuI	CTGAAG	1 cut(s)	276
AfiI	CCNNNNNNNGG	2 cut(s)	662, 663
AflIII	ACRYGT	1 cut(s)	52
AgsI	TTSAA	3 cut(s)	239, 622, 652
AjnI	CCWGG	1 cut(s)	478
AluBI	AGCT	4 cut(s)	136, 323, 332, 492
AluI	AGCT	4 cut(s)	136, 323, 332, 492
Alw26I	GTCTC	1 cut(s)	709
AlwI	GGATC	1 cut(s)	179
Ama87I	CYCGRG	1 cut(s)	35
AoxI	GGCC	4 cut(s)	62, 262, 378, 670
ApeKI	GCWGC	5 cut(s)	296, 320, 371, 524, 536
ApoI	RAATTY	1 cut(s)	622
Asp700I	GAANNNNTTC	1 cut(s)	608
AspS9I	GGNCC	3 cut(s)	63, 263, 379
AvaI	CYCGRG	1 cut(s)	35
BalI	TGGCCA	1 cut(s)	672
BbvI	GCAGC	5 cut(s)	308, 332, 358, 511, 523
BccI	CCATC	2 cut(s)	254, 656
BciT130I	CCWGG	1 cut(s)	480
BcoDI	GTCTC	1 cut(s)	709
BfaI	CTAG	2 cut(s)	728, 734
BfmI	CTRYAG	1 cut(s)	554
BisI	GCNGC	5 cut(s)	297, 321, 372, 525, 537
BlpI	GCTNAGC	1 cut(s)	324
BlsI	GCNGC	5 cut(s)	298, 322, 373, 526, 538
Bme1390I	CCNGG	1 cut(s)	480
BmeT110I	CYCGRG	1 cut(s)	35
BmgT120I	GGNCC	3 cut(s)	63, 263, 379
BmrFI	CCNGG	1 cut(s)	480
BmrI	ACTGGG	2 cut(s)	116, 283
BmsI	GCATC	3 cut(s)	137, 277, 548
BmuI	ACTGGG	2 cut(s)	116, 283
Bpu1102I	GCTNAGC	1 cut(s)	324
BpuEI	CTTGAG	2 cut(s)	106, 514
BsaI	GGTCTC	1 cut(s)	709
BsaJI	CCNNGG	1 cut(s)	562
Bsc4I	CCNNNNNNNGG	2 cut(s)	662, 663
Bse1I	ACTGG	2 cut(s)	111, 278
Bse3DI	GCAATG	1 cut(s)	381
BseBI	CCWGG	1 cut(s)	480
BseDI	CCNNGG	1 cut(s)	562
BseLI	CCNNNNNNNGG	2 cut(s)	662, 663
BseMI	GCAATG	1 cut(s)	381
BseMII	CTCAG	3 cut(s)	146, 315, 437
BseNI	ACTGG	2 cut(s)	111, 278
BseXI	GCAGC	5 cut(s)	308, 332, 358, 511, 523
BshFI	GGCC	4 cut(s)	64, 264, 380, 672
BsiHKCI	CYCGRG	1 cut(s)	35
BslFI	GGGAC	3 cut(s)	125, 569, 668
BslI	CCNNNNNNNGG	2 cut(s)	662, 663
BsmAI	GTCTC	1 cut(s)	709
BsmFI	GGGAC	3 cut(s)	125, 569, 668
BsnI	GGCC	4 cut(s)	64, 264, 380, 672
Bso31I	GGTCTC	1 cut(s)	709
BsoBI	CYCGRG	1 cut(s)	35
Bsp143I	GATC	1 cut(s)	171
Bsp1720I	GCTNAGC	1 cut(s)	324
Bsp19I	CCATGG	1 cut(s)	562
BspACI	CCGC	1 cut(s)	745
BspANI	GGCC	4 cut(s)	64, 264, 380, 672
BspCNI	CTCAG	3 cut(s)	145, 316, 438
BspMAI	CTGCAG	1 cut(s)	558
BspPI	GGATC	1 cut(s)	179
BspTNI	GGTCTC	1 cut(s)	709
BsrBI	CCGCTC	1 cut(s)	747
BsrDI	GCAATG	1 cut(s)	381
BsrI	ACTGG	2 cut(s)	111, 278
BssECI	CCNNGG	1 cut(s)	562
BssMI	GATC	1 cut(s)	171
BssT1I	CCWWGG	1 cut(s)	562
Bst2UI	CCWGG	1 cut(s)	480
Bst4CI	ACNGT	1 cut(s)	682
BstAPI	GCANNNNNTGC	1 cut(s)	533
BstC8I	GCNNGC	3 cut(s)	330, 473, 534
BstDEI	CTNAG	4 cut(s)	132, 324, 446, 464
BstDSI	CCRYGG	1 cut(s)	562
BstEII	GGTNACC	1 cut(s)	740
BstKTI	GATC	1 cut(s)	174
BstMAI	GTCTC	1 cut(s)	709
BstMBI	GATC	1 cut(s)	171
BstMWI	GCNNNNNNNGC	4 cut(s)	296, 329, 377, 533
BstNI	CCWGG	1 cut(s)	480
BstNSI	RCATGY	1 cut(s)	56
BstPI	GGTNACC	1 cut(s)	740
BstSCI	CCNGG	1 cut(s)	478
BstSFI	CTRYAG	1 cut(s)	554
BstV1I	GCAGC	5 cut(s)	308, 332, 358, 511, 523
BstX2I	RGATCY	1 cut(s)	171
BstXI	CCANNNNNNTGG	1 cut(s)	273
BstYI	RGATCY	1 cut(s)	171
BsuRI	GGCC	4 cut(s)	64, 264, 380, 672
BtgI	CCRYGG	1 cut(s)	562
BtsI	GCAGTG	2 cut(s)	225, 563
BtsIMutI	CAGTG	2 cut(s)	225, 563
Cac8I	GCNNGC	3 cut(s)	330, 473, 534
Cfr13I	GGNCC	3 cut(s)	63, 263, 379
CviAII	CATG	4 cut(s)	53, 231, 518, 563
DdeI	CTNAG	4 cut(s)	132, 324, 446, 464
DpnI	GATC	1 cut(s)	173
DpnII	GATC	1 cut(s)	171
EaeI	YGGCCR	1 cut(s)	670
Eco130I	CCWWGG	1 cut(s)	562
Eco31I	GGTCTC	1 cut(s)	709
Eco57I	CTGAAG	1 cut(s)	276
Eco88I	CYCGRG	1 cut(s)	35
Eco91I	GGTNACC	1 cut(s)	740
EcoO65I	GGTNACC	1 cut(s)	740
EcoRI	GAATTC	1 cut(s)	622
EcoRII	CCWGG	1 cut(s)	478
EcoT14I	CCWWGG	1 cut(s)	562
ErhI	CCWWGG	1 cut(s)	562
FaeI	CATG	4 cut(s)	56, 234, 521, 566
FaqI	GGGAC	3 cut(s)	125, 569, 668
FatI	CATG	4 cut(s)	52, 230, 517, 562
Fnu4HI	GCNGC	5 cut(s)	297, 321, 372, 525, 537
Fsp4HI	GCNGC	5 cut(s)	297, 321, 372, 525, 537
FspBI	CTAG	2 cut(s)	728, 734
GluI	GCNGC	5 cut(s)	297, 321, 372, 525, 537
HaeIII	GGCC	4 cut(s)	64, 264, 380, 672
Hin1II	CATG	4 cut(s)	56, 234, 521, 566
HinfI	GANTC	2 cut(s)	143, 639
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	2 cut(s)	256, 447
Hpy188III	TCNNGA	2 cut(s)	613, 750
Hpy8I	GTNNAC	1 cut(s)	310
HpyAV	CCTTC	2 cut(s)	39, 503
HpyCH4III	ACNGT	1 cut(s)	682
HpyCH4V	TGCA	9 cut(s)	128, 225, 230, 374, 392, 527, 539, 556, 722
HpyF10VI	GCNNNNNNNGC	4 cut(s)	296, 329, 377, 533
HpyF3I	CTNAG	4 cut(s)	132, 324, 446, 464
Hsp92II	CATG	4 cut(s)	56, 234, 521, 566
Kzo9I	GATC	1 cut(s)	171
LmnI	GCTCC	4 cut(s)	190, 482, 489, 752
Lsp1109I	GCAGC	5 cut(s)	308, 332, 358, 511, 523
LweI	GCATC	3 cut(s)	137, 277, 548
MaeI	CTAG	2 cut(s)	728, 734
MaeIII	GTNAC	3 cut(s)	513, 543, 740
MalI	GATC	1 cut(s)	173
MbiI	CCGCTC	1 cut(s)	747
MboI	GATC	1 cut(s)	171
MboII	GAAGA	2 cut(s)	39, 269
MfeI	CAATTG	1 cut(s)	709
MflI	RGATCY	1 cut(s)	171
MlsI	TGGCCA	1 cut(s)	672
MluCI	AATT	2 cut(s)	622, 709
MluNI	TGGCCA	1 cut(s)	672
MmeI	TCCRAC	2 cut(s)	203, 439
MnlI	CCTC	9 cut(s)	54, 62, 347, 441, 447, 514, 653, 694, 730
Mox20I	TGGCCA	1 cut(s)	672
MroXI	GAANNNNTTC	1 cut(s)	608
MscI	TGGCCA	1 cut(s)	672
MseI	TTAA	1 cut(s)	339
MslI	CAYNNNNRTG	1 cut(s)	567
Msp20I	TGGCCA	1 cut(s)	672
MspA1I	CMGCKG	2 cut(s)	323, 332
MspR9I	CCNGG	1 cut(s)	480
MunI	CAATTG	1 cut(s)	709
MvaI	CCWGG	1 cut(s)	480
MwoI	GCNNNNNNNGC	4 cut(s)	296, 329, 377, 533
NcoI	CCATGG	1 cut(s)	562
NdeII	GATC	1 cut(s)	171
NlaIII	CATG	4 cut(s)	56, 234, 521, 566
NmuCI	GTSAC	1 cut(s)	513
NspI	RCATGY	1 cut(s)	56
PaeR7I	CTCGAG	1 cut(s)	35
PciI	ACATGT	1 cut(s)	52
PdmI	GAANNNNTTC	1 cut(s)	608
PfeI	GAWTC	2 cut(s)	143, 639
PfoI	TCCNGGA	1 cut(s)	478
PkrI	GCNGC	5 cut(s)	298, 322, 373, 526, 538
PscI	ACATGT	1 cut(s)	52
Psp6I	CCWGG	1 cut(s)	478
PspEI	GGTNACC	1 cut(s)	740
PspGI	CCWGG	1 cut(s)	478
PspPI	GGNCC	3 cut(s)	63, 263, 379
PspXI	VCTCGAGB	1 cut(s)	35
PstI	CTGCAG	1 cut(s)	558
PsuI	RGATCY	1 cut(s)	171
PvuII	CAGCTG	2 cut(s)	323, 332
RseI	CAYNNNNRTG	1 cut(s)	567
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	5 cut(s)	297, 321, 372, 525, 537
Sau3AI	GATC	1 cut(s)	171
Sau96I	GGNCC	3 cut(s)	63, 263, 379
ScrFI	CCNGG	1 cut(s)	480
SetI	ASST	6 cut(s)	138, 325, 334, 416, 494, 705
SfaNI	GCATC	3 cut(s)	137, 277, 548
SfcI	CTRYAG	1 cut(s)	554
Sfr274I	CTCGAG	1 cut(s)	35
SlaI	CTCGAG	1 cut(s)	35
SmiMI	CAYNNNNRTG	1 cut(s)	567
SmlI	CTYRAG	3 cut(s)	35, 121, 493
SmoI	CTYRAG	3 cut(s)	35, 121, 493
Sse9I	AATT	2 cut(s)	622, 709
SsiI	CCGC	1 cut(s)	745
SspMI	CTAG	2 cut(s)	728, 734
StyD4I	CCNGG	1 cut(s)	478
StyI	CCWWGG	1 cut(s)	562
TaaI	ACNGT	1 cut(s)	682
TaqI	TCGA	3 cut(s)	25, 36, 637
TasI	AATT	2 cut(s)	622, 709
TfiI	GAWTC	2 cut(s)	143, 639
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	2 cut(s)	232, 563
TseFI	GTSAC	1 cut(s)	513
TseI	GCWGC	5 cut(s)	296, 320, 371, 524, 536
Tsp45I	GTSAC	1 cut(s)	513
TspDTI	ATGAA	1 cut(s)	710
TspGWI	ACGGA	1 cut(s)	117
TspRI	CASTG	2 cut(s)	232, 563
XapI	RAATTY	1 cut(s)	622
XceI	RCATGY	1 cut(s)	56
XcmI	CCANNNNNNNNNTGG	1 cut(s)	165
XhoI	CTCGAG	1 cut(s)	35
XmnI	GAANNNNTTC	1 cut(s)	608
XspI	CTAG	2 cut(s)	728, 734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.