Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0003505

Physical Location & Seq

Genomic Coordinates Reverse (-)

25491890 .. 25495523

Gene Structure 3634 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1221600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGAGCTATACGCATTCTAACATGTCTTCTGGTAGCAGAACTGCTAAGAGAATTGAGTTTGGTAGGACACATGTGGTGAGGCCCAAAGGAAAGCATCAAGCAACAATGGTCTGGCTGCATGGACTTGGAGATAACGGCTCAAGCACATCTCAAATGTTGGAATCTCTACCACTTCCAAATATTAAGTGGATCTGCCCAACTGCTCCTACCCGTCCTGTGGCTGTACTAGGTGGATTTCCTTGCACTGCATGGTTTGAAATGGGAGAGCTTTCAGATGATGGTCCAGATGATTGGGAGAATTTAGATGCTTCAGCAGCGCATATTGCGAACTTGTTGTCAACTGAGCCAGCTGATGTTAAAGTCGGTATTGGAGGCTTTAGCATGGGTGCTGCAATGGCCCTTTACTCTGCAACTTGTTATGCTGCGGGTAGGTACGGAAATGGCAACCCATACCCTCTCAATCTGAGGGCAGTTGTTGGACTAAGTGGCTGGCTTCCAGGAGCAAGGAGCTTATGGAACAAAATAGAAGGTTCACACGAGGCTTTGAGGCGTGCCGCATCATTACCCATTTTGCAATGCCATGGAACCAGTGATGGTGAAGTAGCCTACAAATATGGAGAGAAATCAGTCCAGTGCTTGACTTCAGCAGGATTCCGATACCTTTCGTTCAAACCATTTGAAGGGCTCGGCCACTACACTATCCCTAAAGAGATGAATGAGGTCTCCAGTTGGCTTTCTGCACGGCTGGGGCTTGACGGGTATCGCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0002084 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0006928 GO:0006935 GO:0007275 GO:0007399 GO:0007409 GO:0007411 GO:0008150 GO:0008152 GO:0008474 GO:0009056 GO:0009057 GO:0009605 GO:0009653 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016790 GO:0019538 GO:0022008 GO:0030030 GO:0030154 GO:0030163 GO:0030182 GO:0031175 GO:0032501 GO:0032502 GO:0032989 GO:0032990 GO:0035601 GO:0036211 GO:0040011 GO:0042157 GO:0042159 GO:0042221 GO:0042330 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048468 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0050896 GO:0052689 GO:0061564 GO:0071704 GO:0071840 GO:0097485 GO:0098599 GO:0098732 GO:0098734 GO:0120036 GO:0120039 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Abhydrolase_2

Protein Analysis

257

Amino Acids

27.64

Weight (kDa)

7.69

Isoelectric Point (pI)

44.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_2	PF02230	24 - 247	8.8e-39	Phospholipase/Carboxylesterase
FSH1	PF03959	81 - 205	3.4e-06	Serine hydrolase (FSH1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52700 AT1G52700 AT1G52700 AT1G52700 AT1G52700 AT1G52700 AT3G15650 AT3G15650 AT3G15650
fragaria_vesca	FvH4_6g30430 FvH4_6g30430
malus_domestica	MD09G1221600.v1.1 MD17G1203800.v1.1
prunus_persica	Prupe.3G078700_v2.0.a1 Prupe.3G078700_v2.0.a1 Prupe.3G078700_v2.0.a1 Prupe.3G078700_v2.0.a1 Prupe.3G078700_v2.0.a1 Prupe.3G078700_v2.0.a1 Prupe.3G078700_v2.0.a1
pyrus_communis	pycom17g20740
rosa_chinensis	RchiOBHm_Chr2g0136771
rosa_laevigata	RLG00000019571
rosa_multiflora	Rmu_sc0001299.1_g000019
rosa_roxburghii	Rroxscaffold_2G00108080
rosa_rugosa	Rorug02G0333000 Rorug02G0333000 Rorug02G0333000 Rorug02G0333000 Rorug02G0333100 Rorug02G0333100
rosa_samantha	Rh2BG390500 Rh2CG370300 Rh2DG407100
rosa_wichuraiana	Rw2G031390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	425, 555
AclWI	GGATC	1 cut(s)	197
AcoI	YGGCCR	1 cut(s)	688
AcsI	RAATTY	1 cut(s)	298
AcuI	CTGAAG	2 cut(s)	294, 627
AfaI	GTAC	2 cut(s)	225, 434
AfiI	CCNNNNNNNGG	2 cut(s)	217, 680
AflIII	ACRYGT	2 cut(s)	21, 70
AgsI	TTSAA	3 cut(s)	257, 670, 680
AjnI	CCWGG	1 cut(s)	496
AluBI	AGCT	4 cut(s)	6, 268, 350, 510
AluI	AGCT	4 cut(s)	6, 268, 350, 510
Alw26I	GTCTC	1 cut(s)	727
AlwI	GGATC	1 cut(s)	197
AoxI	GGCC	3 cut(s)	80, 396, 688
ApeKI	GCWGC	4 cut(s)	115, 314, 389, 422
ApoI	RAATTY	1 cut(s)	298
ArsI	GACNNNNNNTTYG	2 cut(s)	320, 352
AspLEI	GCGC	1 cut(s)	319
AspS9I	GGNCC	3 cut(s)	81, 281, 397
AsuHPI	GGTGA	2 cut(s)	88, 608
AvaII	GGWCC	1 cut(s)	281
BanII	GRGCYC	1 cut(s)	687
BauI	CACGAG	1 cut(s)	536
BbsI	GAAGAC	1 cut(s)	18
BbvI	GCAGC	4 cut(s)	102, 326, 376, 409
BccI	CCATC	2 cut(s)	272, 587
BceAI	ACGGC	2 cut(s)	151, 758
BciT130I	CCWGG	1 cut(s)	498
BcoDI	GTCTC	1 cut(s)	727
BfaI	CTAG	1 cut(s)	227
BisI	GCNGC	5 cut(s)	116, 315, 390, 423, 555
BlsI	GCNGC	5 cut(s)	117, 316, 391, 424, 556
Bme1390I	CCNGG	1 cut(s)	498
Bme18I	GGWCC	1 cut(s)	281
BmgT120I	GGNCC	3 cut(s)	81, 281, 397
BmiI	GGNNCC	1 cut(s)	586
BmrFI	CCNGG	1 cut(s)	498
BmsI	GCATC	3 cut(s)	103, 295, 566
BpiI	GAAGAC	1 cut(s)	18
BpmI	CTGGAG	1 cut(s)	709
BpuEI	CTTGAG	1 cut(s)	124
BsaI	GGTCTC	1 cut(s)	727
BsaJI	CCNNGG	1 cut(s)	580
Bsc4I	CCNNNNNNNGG	2 cut(s)	217, 680
Bse1I	ACTGG	3 cut(s)	588, 631, 726
Bse3DI	GCAATG	2 cut(s)	399, 581
BseBI	CCWGG	1 cut(s)	498
BseDI	CCNNGG	1 cut(s)	580
BseLI	CCNNNNNNNGG	2 cut(s)	217, 680
BseMI	GCAATG	2 cut(s)	399, 581
BseMII	CTCAG	2 cut(s)	333, 455
BseNI	ACTGG	3 cut(s)	588, 631, 726
BseXI	GCAGC	4 cut(s)	102, 326, 376, 409
BseYI	CCCAGC	1 cut(s)	745
BsgI	GTGCAG	1 cut(s)	723
BshFI	GGCC	3 cut(s)	82, 398, 690
BslI	CCNNNNNNNGG	2 cut(s)	217, 680
BsmAI	GTCTC	1 cut(s)	727
BsmI	GAATGC	1 cut(s)	13
BsnI	GGCC	3 cut(s)	82, 398, 690
Bso31I	GGTCTC	1 cut(s)	727
Bsp1286I	GDGCHC	1 cut(s)	687
Bsp143I	GATC	1 cut(s)	189
Bsp19I	CCATGG	1 cut(s)	580
BspACI	CCGC	2 cut(s)	425, 555
BspANI	GGCC	3 cut(s)	82, 398, 690
BspCNI	CTCAG	2 cut(s)	334, 456
BspLI	GGNNCC	1 cut(s)	586
BspPI	GGATC	1 cut(s)	197
BspTNI	GGTCTC	1 cut(s)	727
BsrDI	GCAATG	2 cut(s)	399, 581
BsrI	ACTGG	3 cut(s)	588, 631, 726
BssECI	CCNNGG	1 cut(s)	580
BssMI	GATC	1 cut(s)	189
BssSI	CACGAG	1 cut(s)	536
BssT1I	CCWWGG	1 cut(s)	580
Bst2BI	CACGAG	1 cut(s)	536
Bst2UI	CCWGG	1 cut(s)	498
BstC8I	GCNNGC	3 cut(s)	348, 491, 552
BstDEI	CTNAG	4 cut(s)	45, 342, 464, 482
BstDSI	CCRYGG	1 cut(s)	580
BstHHI	GCGC	1 cut(s)	319
BstKTI	GATC	1 cut(s)	192
BstMAI	GTCTC	1 cut(s)	727
BstMBI	GATC	1 cut(s)	189
BstMWI	GCNNNNNNNGC	3 cut(s)	314, 323, 395
BstNI	CCWGG	1 cut(s)	498
BstNSI	RCATGY	2 cut(s)	25, 74
BstSCI	CCNGG	1 cut(s)	496
BstV1I	GCAGC	4 cut(s)	102, 326, 376, 409
BstV2I	GAAGAC	1 cut(s)	18
BstX2I	RGATCY	1 cut(s)	189
BstXI	CCANNNNNNTGG	1 cut(s)	291
BstYI	RGATCY	1 cut(s)	189
BsuRI	GGCC	3 cut(s)	82, 398, 690
BtgI	CCRYGG	1 cut(s)	580
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	3 cut(s)	243, 595, 638
Cac8I	GCNNGC	3 cut(s)	348, 491, 552
CfoI	GCGC	1 cut(s)	319
Cfr13I	GGNCC	3 cut(s)	81, 281, 397
Csp6I	GTAC	2 cut(s)	224, 433
CviAII	CATG	6 cut(s)	22, 71, 119, 249, 382, 581
CviQI	GTAC	2 cut(s)	224, 433
DdeI	CTNAG	4 cut(s)	45, 342, 464, 482
DpnI	GATC	1 cut(s)	191
DpnII	GATC	1 cut(s)	189
EaeI	YGGCCR	1 cut(s)	688
Eco130I	CCWWGG	1 cut(s)	580
Eco24I	GRGCYC	1 cut(s)	687
Eco31I	GGTCTC	1 cut(s)	727
Eco47I	GGWCC	1 cut(s)	281
Eco57I	CTGAAG	2 cut(s)	294, 627
EcoRII	CCWGG	1 cut(s)	496
EcoT14I	CCWWGG	1 cut(s)	580
EcoT38I	GRGCYC	1 cut(s)	687
ErhI	CCWWGG	1 cut(s)	580
FaeI	CATG	6 cut(s)	25, 74, 122, 252, 385, 584
FatI	CATG	6 cut(s)	21, 70, 118, 248, 381, 580
FauI	CCCGC	1 cut(s)	418
Fnu4HI	GCNGC	5 cut(s)	116, 315, 390, 423, 555
FriOI	GRGCYC	1 cut(s)	687
Fsp4HI	GCNGC	5 cut(s)	116, 315, 390, 423, 555
FspBI	CTAG	1 cut(s)	227
GlaI	GCGC	1 cut(s)	318
GluI	GCNGC	5 cut(s)	116, 315, 390, 423, 555
GsaI	CCCAGC	1 cut(s)	749
GsuI	CTGGAG	1 cut(s)	709
HaeIII	GGCC	3 cut(s)	82, 398, 690
HhaI	GCGC	1 cut(s)	319
Hin1II	CATG	6 cut(s)	25, 74, 122, 252, 385, 584
Hin6I	GCGC	1 cut(s)	317
HinP1I	GCGC	1 cut(s)	317
HincII	GTYRAC	1 cut(s)	339
HindII	GTYRAC	1 cut(s)	339
HinfI	GANTC	2 cut(s)	161, 651
HphI	GGTGA	2 cut(s)	88, 608
Hpy166II	GTNNAC	2 cut(s)	339, 533
Hpy188I	TCNGA	3 cut(s)	274, 465, 656
Hpy188III	TCNNGA	1 cut(s)	284
Hpy8I	GTNNAC	2 cut(s)	339, 533
HpyAV	CCTTC	2 cut(s)	521, 674
HpyCH4V	TGCA	7 cut(s)	118, 243, 248, 392, 410, 574, 740
HpyF10VI	GCNNNNNNNGC	3 cut(s)	314, 323, 395
HpyF3I	CTNAG	4 cut(s)	45, 342, 464, 482
Hsp92II	CATG	6 cut(s)	25, 74, 122, 252, 385, 584
HspAI	GCGC	1 cut(s)	317
Kzo9I	GATC	1 cut(s)	189
LmnI	GCTCC	3 cut(s)	208, 500, 507
Lsp1109I	GCAGC	4 cut(s)	102, 326, 376, 409
LweI	GCATC	3 cut(s)	103, 295, 566
MaeI	CTAG	1 cut(s)	227
MalI	GATC	1 cut(s)	191
MboI	GATC	1 cut(s)	189
MboII	GAAGA	1 cut(s)	18
MflI	RGATCY	1 cut(s)	189
MhlI	GDGCHC	1 cut(s)	687
MluCI	AATT	2 cut(s)	51, 298
MmeI	TCCRAC	2 cut(s)	138, 457
MnlI	CCTC	7 cut(s)	72, 365, 459, 465, 532, 540, 712
MseI	TTAA	2 cut(s)	183, 357
MspA1I	CMGCKG	1 cut(s)	350
MspR9I	CCNGG	1 cut(s)	498
Mva1269I	GAATGC	1 cut(s)	13
MvaI	CCWGG	1 cut(s)	498
MwoI	GCNNNNNNNGC	3 cut(s)	314, 323, 395
NcoI	CCATGG	1 cut(s)	580
NdeII	GATC	1 cut(s)	189
NlaIII	CATG	6 cut(s)	25, 74, 122, 252, 385, 584
NlaIV	GGNNCC	1 cut(s)	586
NmeAIII	GCCGAG	1 cut(s)	666
NspI	RCATGY	2 cut(s)	25, 74
PciI	ACATGT	2 cut(s)	21, 70
PctI	GAATGC	1 cut(s)	13
PfeI	GAWTC	2 cut(s)	161, 651
PfoI	TCCNGGA	1 cut(s)	496
PkrI	GCNGC	5 cut(s)	117, 316, 391, 424, 556
PscI	ACATGT	2 cut(s)	21, 70
Psp6I	CCWGG	1 cut(s)	496
PspFI	CCCAGC	1 cut(s)	745
PspGI	CCWGG	1 cut(s)	496
PspN4I	GGNNCC	1 cut(s)	586
PspPI	GGNCC	3 cut(s)	81, 281, 397
PsuI	RGATCY	1 cut(s)	189
PvuII	CAGCTG	1 cut(s)	350
RsaI	GTAC	2 cut(s)	225, 434
RsaNI	GTAC	2 cut(s)	224, 433
SaqAI	TTAA	2 cut(s)	183, 357
SatI	GCNGC	5 cut(s)	116, 315, 390, 423, 555
Sau3AI	GATC	1 cut(s)	189
Sau96I	GGNCC	3 cut(s)	81, 281, 397
ScrFI	CCNGG	1 cut(s)	498
SduI	GDGCHC	1 cut(s)	687
SetI	ASST	9 cut(s)	8, 232, 270, 352, 434, 512, 532, 663, 723
SfaNI	GCATC	3 cut(s)	103, 295, 566
SinI	GGWCC	1 cut(s)	281
SmlI	CTYRAG	1 cut(s)	139
SmoI	CTYRAG	1 cut(s)	139
Sse9I	AATT	2 cut(s)	51, 298
SsiI	CCGC	2 cut(s)	425, 555
SspI	AATATT	1 cut(s)	181
SspMI	CTAG	1 cut(s)	227
StyD4I	CCNGG	1 cut(s)	496
StyI	CCWWGG	1 cut(s)	580
TasI	AATT	2 cut(s)	51, 298
TatI	WGTACW	1 cut(s)	223
TauI	GCSGC	1 cut(s)	557
TfiI	GAWTC	2 cut(s)	161, 651
Tru1I	TTAA	2 cut(s)	183, 357
Tru9I	TTAA	2 cut(s)	183, 357
TscAI	CASTG	3 cut(s)	250, 595, 638
TseI	GCWGC	4 cut(s)	115, 314, 389, 422
TspDTI	ATGAA	1 cut(s)	728
TspGWI	ACGGA	1 cut(s)	450
TspRI	CASTG	3 cut(s)	250, 595, 638
VpaK11BI	GGWCC	1 cut(s)	281
XapI	RAATTY	1 cut(s)	298
XceI	RCATGY	2 cut(s)	25, 74
XcmI	CCANNNNNNNNNTGG	1 cut(s)	183
XspI	CTAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.