Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0003505

Physical Location & Seq

Genomic Coordinates Forward (+)

24659903 .. 24663173

Gene Structure 3271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1203800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGTGCTCAACTTTGGCATGGATTCTCTCTGCTATCTTCCTACTTTTTTTCGAGGCAGTTTTTGGCGTAGCTGGTAGCAGAACTGCTAGAAGAATTGAGTTTGGTAGGACACACGTGGTGAGGCCCAAAGGAAAGCATCAAGCAACAATGGTCTGGCTGCATGGACTTGGGGACAACGGTTCAAGCACATCTCAAATGTTGGAATCTCTACCTCTTCCAAATATTAAGTGGATCTGCCCAACTGCTCCTAAACGTCCTGTGGCTATGCTCGGTGGATTTGCATGCACTGCATGGTTCGCAGTTGGAGAGCTTTCAGAAGATGGTCCAGATGATTGGGAGAGTTTAGATGCTTCAGCAGCGCATATTGCGAACTTGTTGTCAACTGAGCCAGCTGATGTTAAAGTCGGTATTGGAGGCTTTAGCATGGGTGCTGCAATGGCCCTTTACTCTGCAACTTGTTATGCTGCGGGTAGGTACGGAAATGGGAACCCATATCCTCTCAATCTGAGGGCAGTTGTTGGACTAAGTGGCTGGCTTCCAGGAGCGAGGAGCTTACGGAACAAAATAGAAAGGTCACATGAGGCTTTGAGGCGTGCTGCATCGTTACCCATTTTGCAATGCCATGGAAGCAGTGATGATGTAGTACCCTACAACTATGGAGAGAAATCAGTCCACTGCTTGACTACAGCAGGGTTCCGATACCTTTCGTTCAAACCCTTTGAAGGGCTCGGTCACTACACTATCCCTAAAGAGATGAATGACGTCTCCAGTTGGCTTTCTGCAAGGCTGGGGCTTGATGGGTATCGCTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0002084 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0006928 GO:0006935 GO:0007275 GO:0007399 GO:0007409 GO:0007411 GO:0008150 GO:0008152 GO:0008474 GO:0009056 GO:0009057 GO:0009605 GO:0009653 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016790 GO:0019538 GO:0022008 GO:0030030 GO:0030154 GO:0030163 GO:0030182 GO:0031175 GO:0032501 GO:0032502 GO:0032989 GO:0032990 GO:0035601 GO:0036211 GO:0040011 GO:0042157 GO:0042159 GO:0042221 GO:0042330 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048468 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0050896 GO:0052689 GO:0061564 GO:0071704 GO:0071840 GO:0097485 GO:0098599 GO:0098732 GO:0098734 GO:0120036 GO:0120039 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Abhydrolase_2

Protein Analysis

271

Amino Acids

29.21

Weight (kDa)

8.51

Isoelectric Point (pI)

48.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_2	PF02230	38 - 261	2.7e-42	Phospholipase/Carboxylesterase
FSH1	PF03959	97 - 223	6.5e-08	Serine hydrolase (FSH1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52700 AT1G52700 AT1G52700 AT1G52700 AT1G52700 AT1G52700 AT3G15650 AT3G15650 AT3G15650
fragaria_vesca	FvH4_6g30430 FvH4_6g30430
malus_domestica	MD09G1221600.v1.1 MD17G1203800.v1.1
prunus_persica	Prupe.3G078700_v2.0.a1 Prupe.3G078700_v2.0.a1 Prupe.3G078700_v2.0.a1 Prupe.3G078700_v2.0.a1 Prupe.3G078700_v2.0.a1 Prupe.3G078700_v2.0.a1 Prupe.3G078700_v2.0.a1
pyrus_communis	pycom17g20740
rosa_chinensis	RchiOBHm_Chr2g0136771
rosa_laevigata	RLG00000019571
rosa_multiflora	Rmu_sc0001299.1_g000019
rosa_roxburghii	Rroxscaffold_2G00108080
rosa_rugosa	Rorug02G0333000 Rorug02G0333000 Rorug02G0333000 Rorug02G0333000 Rorug02G0333100 Rorug02G0333100
rosa_samantha	Rh2BG390500 Rh2CG370300 Rh2DG407100
rosa_wichuraiana	Rw2G031390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	765
AciI	CCGC	1 cut(s)	467
AclWI	GGATC	1 cut(s)	239
AcuI	CTGAAG	1 cut(s)	336
AcvI	CACGTG	1 cut(s)	115
AcyI	GRCGYC	1 cut(s)	762
AdeI	CACNNNGTG	1 cut(s)	118
AfaI	GTAC	2 cut(s)	476, 645
AfiI	CCNNNNNNNGG	2 cut(s)	722, 723
AflIII	ACRYGT	1 cut(s)	112
AgsI	TTSAA	3 cut(s)	183, 712, 722
AjnI	CCWGG	1 cut(s)	538
AluBI	AGCT	4 cut(s)	71, 310, 392, 552
AluI	AGCT	4 cut(s)	71, 310, 392, 552
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	769
AlwI	GGATC	1 cut(s)	239
AoxI	GGCC	2 cut(s)	122, 438
ApeKI	GCWGC	5 cut(s)	157, 356, 431, 464, 596
ArsI	GACNNNNNNTTYG	2 cut(s)	362, 394
AspLEI	GCGC	1 cut(s)	361
AspS9I	GGNCC	3 cut(s)	123, 323, 439
AsuHPI	GGTGA	1 cut(s)	130
AvaII	GGWCC	1 cut(s)	323
BanII	GRGCYC	1 cut(s)	729
BbrPI	CACGTG	1 cut(s)	115
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	5 cut(s)	144, 368, 418, 451, 583
BccI	CCATC	2 cut(s)	314, 791
BciT130I	CCWGG	1 cut(s)	540
BcoDI	GTCTC	1 cut(s)	769
BfaI	CTAG	1 cut(s)	87
BfmI	CTRYAG	1 cut(s)	684
BisI	GCNGC	5 cut(s)	158, 357, 432, 465, 597
BlsI	GCNGC	5 cut(s)	159, 358, 433, 466, 598
Bme1390I	CCNGG	1 cut(s)	540
Bme18I	GGWCC	1 cut(s)	323
BmgT120I	GGNCC	3 cut(s)	123, 323, 439
BmiI	GGNNCC	2 cut(s)	488, 695
BmrFI	CCNGG	1 cut(s)	540
BmsI	GCATC	3 cut(s)	145, 337, 608
BpmI	CTGGAG	1 cut(s)	751
BsaAI	YACGTR	1 cut(s)	115
BsaBI	GATNNNNATC	1 cut(s)	801
BsaHI	GRCGYC	1 cut(s)	762
BsaJI	CCNNGG	1 cut(s)	622
Bsc4I	CCNNNNNNNGG	2 cut(s)	722, 723
Bse1I	ACTGG	1 cut(s)	768
Bse3DI	GCAATG	2 cut(s)	441, 623
Bse8I	GATNNNNATC	1 cut(s)	801
BseBI	CCWGG	1 cut(s)	540
BseDI	CCNNGG	1 cut(s)	622
BseJI	GATNNNNATC	1 cut(s)	801
BseLI	CCNNNNNNNGG	2 cut(s)	722, 723
BseMI	GCAATG	2 cut(s)	441, 623
BseMII	CTCAG	2 cut(s)	375, 497
BseNI	ACTGG	1 cut(s)	768
BseRI	GAGGAG	1 cut(s)	562
BseXI	GCAGC	5 cut(s)	144, 368, 418, 451, 583
BseYI	CCCAGC	1 cut(s)	787
BshFI	GGCC	2 cut(s)	124, 440
BsiHKAI	GWGCWC	1 cut(s)	8
BslFI	GGGAC	1 cut(s)	185
BslI	CCNNNNNNNGG	2 cut(s)	722, 723
BsmAI	GTCTC	1 cut(s)	769
BsmBI	CGTCTC	1 cut(s)	769
BsmFI	GGGAC	1 cut(s)	185
BsnI	GGCC	2 cut(s)	124, 440
Bsp1286I	GDGCHC	2 cut(s)	8, 729
Bsp143I	GATC	1 cut(s)	231
Bsp19I	CCATGG	1 cut(s)	622
BspACI	CCGC	1 cut(s)	467
BspANI	GGCC	2 cut(s)	124, 440
BspCNI	CTCAG	2 cut(s)	376, 498
BspLI	GGNNCC	2 cut(s)	488, 695
BspPI	GGATC	1 cut(s)	239
BsrDI	GCAATG	2 cut(s)	441, 623
BsrI	ACTGG	1 cut(s)	768
BssECI	CCNNGG	1 cut(s)	622
BssMI	GATC	1 cut(s)	231
BssNI	GRCGYC	1 cut(s)	762
BssT1I	CCWWGG	1 cut(s)	622
Bst2UI	CCWGG	1 cut(s)	540
Bst4CI	ACNGT	1 cut(s)	179
Bst6I	CTCTTC	1 cut(s)	219
BstACI	GRCGYC	1 cut(s)	762
BstAPI	GCANNNNNTGC	1 cut(s)	287
BstBAI	YACGTR	1 cut(s)	115
BstC8I	GCNNGC	4 cut(s)	283, 390, 533, 594
BstDEI	CTNAG	3 cut(s)	384, 506, 524
BstDSI	CCRYGG	1 cut(s)	622
BstHHI	GCGC	1 cut(s)	361
BstKTI	GATC	1 cut(s)	234
BstMAI	GTCTC	1 cut(s)	769
BstMBI	GATC	1 cut(s)	231
BstMWI	GCNNNNNNNGC	6 cut(s)	287, 296, 356, 365, 437, 627
BstNI	CCWGG	1 cut(s)	540
BstNSI	RCATGY	1 cut(s)	285
BstSCI	CCNGG	1 cut(s)	538
BstSFI	CTRYAG	1 cut(s)	684
BstV1I	GCAGC	5 cut(s)	144, 368, 418, 451, 583
BstX2I	RGATCY	1 cut(s)	231
BstXI	CCANNNNNNTGG	1 cut(s)	333
BstYI	RGATCY	1 cut(s)	231
BsuRI	GGCC	2 cut(s)	124, 440
BtgI	CCRYGG	1 cut(s)	622
BtsI	GCAGTG	3 cut(s)	285, 637, 673
BtsIMutI	CAGTG	3 cut(s)	285, 637, 673
Cac8I	GCNNGC	4 cut(s)	283, 390, 533, 594
CfoI	GCGC	1 cut(s)	361
Cfr13I	GGNCC	3 cut(s)	123, 323, 439
Csp6I	GTAC	2 cut(s)	475, 644
CviAII	CATG	7 cut(s)	18, 161, 282, 291, 424, 578, 623
CviQI	GTAC	2 cut(s)	475, 644
DdeI	CTNAG	3 cut(s)	384, 506, 524
DpnI	GATC	1 cut(s)	233
DpnII	GATC	1 cut(s)	231
DraIII	CACNNNGTG	1 cut(s)	118
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
Eco130I	CCWWGG	1 cut(s)	622
Eco24I	GRGCYC	1 cut(s)	729
Eco47I	GGWCC	1 cut(s)	323
Eco57I	CTGAAG	1 cut(s)	336
Eco72I	CACGTG	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	538
EcoT14I	CCWWGG	1 cut(s)	622
EcoT38I	GRGCYC	1 cut(s)	729
ErhI	CCWWGG	1 cut(s)	622
Esp3I	CGTCTC	1 cut(s)	769
FaeI	CATG	7 cut(s)	21, 164, 285, 294, 427, 581, 626
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	7 cut(s)	17, 160, 281, 290, 423, 577, 622
FauI	CCCGC	1 cut(s)	460
Fnu4HI	GCNGC	5 cut(s)	158, 357, 432, 465, 597
FriOI	GRGCYC	1 cut(s)	729
Fsp4HI	GCNGC	5 cut(s)	158, 357, 432, 465, 597
FspBI	CTAG	1 cut(s)	87
GlaI	GCGC	1 cut(s)	360
GluI	GCNGC	5 cut(s)	158, 357, 432, 465, 597
GsaI	CCCAGC	1 cut(s)	791
GsuI	CTGGAG	1 cut(s)	751
HaeIII	GGCC	2 cut(s)	124, 440
HhaI	GCGC	1 cut(s)	361
Hin1I	GRCGYC	1 cut(s)	762
Hin1II	CATG	7 cut(s)	21, 164, 285, 294, 427, 581, 626
Hin6I	GCGC	1 cut(s)	359
HinP1I	GCGC	1 cut(s)	359
HincII	GTYRAC	1 cut(s)	381
HindII	GTYRAC	1 cut(s)	381
HinfI	GANTC	2 cut(s)	22, 203
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	2 cut(s)	381, 673
Hpy188I	TCNGA	3 cut(s)	316, 507, 698
Hpy188III	TCNNGA	1 cut(s)	326
Hpy8I	GTNNAC	2 cut(s)	381, 673
HpyAV	CCTTC	1 cut(s)	716
HpyCH4III	ACNGT	1 cut(s)	179
HpyCH4IV	ACGT	3 cut(s)	114, 253, 762
HpyCH4V	TGCA	9 cut(s)	160, 281, 285, 290, 434, 452, 599, 616, 782
HpyF10VI	GCNNNNNNNGC	6 cut(s)	287, 296, 356, 365, 437, 627
HpyF3I	CTNAG	3 cut(s)	384, 506, 524
HpySE526I	ACGT	3 cut(s)	114, 253, 762
Hsp92I	GRCGYC	1 cut(s)	762
Hsp92II	CATG	7 cut(s)	21, 164, 285, 294, 427, 581, 626
HspAI	GCGC	1 cut(s)	359
Kzo9I	GATC	1 cut(s)	231
LmnI	GCTCC	3 cut(s)	250, 542, 549
Lsp1109I	GCAGC	5 cut(s)	144, 368, 418, 451, 583
LweI	GCATC	3 cut(s)	145, 337, 608
MaeI	CTAG	1 cut(s)	87
MaeII	ACGT	3 cut(s)	114, 253, 762
MaeIII	GTNAC	3 cut(s)	573, 603, 731
MalI	GATC	1 cut(s)	233
MboI	GATC	1 cut(s)	231
MboII	GAAGA	4 cut(s)	28, 102, 206, 329
MflI	RGATCY	1 cut(s)	231
MhlI	GDGCHC	2 cut(s)	8, 729
MluCI	AATT	1 cut(s)	93
MmeI	TCCRAC	3 cut(s)	180, 283, 499
MnlI	CCTC	9 cut(s)	46, 114, 222, 407, 501, 507, 540, 574, 582
MseI	TTAA	2 cut(s)	225, 399
MspA1I	CMGCKG	1 cut(s)	392
MspR9I	CCNGG	1 cut(s)	540
MvaI	CCWGG	1 cut(s)	540
MwoI	GCNNNNNNNGC	6 cut(s)	287, 296, 356, 365, 437, 627
NcoI	CCATGG	1 cut(s)	622
NdeII	GATC	1 cut(s)	231
NlaIII	CATG	7 cut(s)	21, 164, 285, 294, 427, 581, 626
NlaIV	GGNNCC	2 cut(s)	488, 695
NmuCI	GTSAC	2 cut(s)	573, 731
NspI	RCATGY	1 cut(s)	285
PaeI	GCATGC	1 cut(s)	285
PfeI	GAWTC	2 cut(s)	22, 203
PfoI	TCCNGGA	1 cut(s)	538
PkrI	GCNGC	5 cut(s)	159, 358, 433, 466, 598
PmaCI	CACGTG	1 cut(s)	115
PmlI	CACGTG	1 cut(s)	115
Ppu21I	YACGTR	1 cut(s)	115
Psp6I	CCWGG	1 cut(s)	538
PspCI	CACGTG	1 cut(s)	115
PspFI	CCCAGC	1 cut(s)	787
PspGI	CCWGG	1 cut(s)	538
PspN4I	GGNNCC	2 cut(s)	488, 695
PspPI	GGNCC	3 cut(s)	123, 323, 439
PsuI	RGATCY	1 cut(s)	231
PvuII	CAGCTG	1 cut(s)	392
RsaI	GTAC	2 cut(s)	476, 645
RsaNI	GTAC	2 cut(s)	475, 644
SaqAI	TTAA	2 cut(s)	225, 399
SatI	GCNGC	5 cut(s)	158, 357, 432, 465, 597
Sau3AI	GATC	1 cut(s)	231
Sau96I	GGNCC	3 cut(s)	123, 323, 439
ScrFI	CCNGG	1 cut(s)	540
SduI	GDGCHC	2 cut(s)	8, 729
SfaNI	GCATC	3 cut(s)	145, 337, 608
SfcI	CTRYAG	1 cut(s)	684
SinI	GGWCC	1 cut(s)	323
SphI	GCATGC	1 cut(s)	285
Sse9I	AATT	1 cut(s)	93
SsiI	CCGC	1 cut(s)	467
SspI	AATATT	1 cut(s)	223
SspMI	CTAG	1 cut(s)	87
StyD4I	CCNGG	1 cut(s)	538
StyI	CCWWGG	1 cut(s)	622
TaaI	ACNGT	1 cut(s)	179
TaiI	ACGT	3 cut(s)	117, 256, 765
TaqI	TCGA	1 cut(s)	51
TaqII	GACCGA	1 cut(s)	719
TasI	AATT	1 cut(s)	93
TfiI	GAWTC	2 cut(s)	22, 203
Tru1I	TTAA	2 cut(s)	225, 399
Tru9I	TTAA	2 cut(s)	225, 399
TscAI	CASTG	3 cut(s)	292, 637, 680
TseFI	GTSAC	2 cut(s)	573, 731
TseI	GCWGC	5 cut(s)	157, 356, 431, 464, 596
Tsp45I	GTSAC	2 cut(s)	573, 731
TspDTI	ATGAA	1 cut(s)	770
TspGWI	ACGGA	2 cut(s)	492, 571
TspRI	CASTG	3 cut(s)	292, 637, 680
VpaK11BI	GGWCC	1 cut(s)	323
XceI	RCATGY	1 cut(s)	285
XcmI	CCANNNNNNNNNTGG	1 cut(s)	225
XspI	CTAG	1 cut(s)	87
ZraI	GACGTC	1 cut(s)	763

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.