Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003505

Physical Location & Seq

Genomic Coordinates Reverse (-)

55445562 .. 55449197

Gene Structure 3636 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG390500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGAGCTATTCACGTTCTAATATGTCTTCTGGTAGCAGAACTGCTCGAAGAACACTCGAGTTTGGAAGGACACATGTTGTGAGGCCCAGAGGGAAACATCAGGCAACAATGGTCTGGCTACACGGACTGGGGGACAATGGCTCAAGTGCATCTCAGCTATTGGAATCTCTCTCTCTCCCAAATATAAAATGGATCTGTCCAACTGCTCCTACTCGTCCTGTGGCTATACTTGGTGGTTATTCTTGCACTGCATGGTTTGAAGTGGGAGAACTATCAGAAGATGGCCCAGATGACTGGGAGAGTTTAGATGCTTCAGCAGCACATATTGTGAACTTGTTGGCAGCTGAGCCAGCTGATGTTAAAGTCGGTATTGGAGGCTTTAGTATGGGTGCTGCAATGGCCCTTTATTCTGCAACTTGTTATGCTATGGGTAGGTATGGAAATGGCAATCCATACCCTCTCAATCTGAGGGCAGTTGTTGGACTTAGTGGCTGGCTTCCAGGAGCAAGGAGCTTGAGAAACAAAATAGAAGGGTCACATGAGGCTGCAAGGCGTGCTGCATCGTTACCCATTCTGCAGTGCCATGGAAATGGTATGTCCGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0002084 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0006928 GO:0006935 GO:0007275 GO:0007399 GO:0007409 GO:0007411 GO:0008150 GO:0008152 GO:0008474 GO:0009056 GO:0009057 GO:0009605 GO:0009653 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016790 GO:0019538 GO:0022008 GO:0030030 GO:0030154 GO:0030163 GO:0030182 GO:0031175 GO:0032501 GO:0032502 GO:0032989 GO:0032990 GO:0035601 GO:0036211 GO:0040011 GO:0042157 GO:0042159 GO:0042221 GO:0042330 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048468 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0050896 GO:0052689 GO:0061564 GO:0071704 GO:0071840 GO:0097485 GO:0098599 GO:0098732 GO:0098734 GO:0120036 GO:0120039 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Abhydrolase_2

Protein Analysis

201

Amino Acids

21.34

Weight (kDa)

8.76

Isoelectric Point (pI)

55.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_2	PF02230	25 - 197	7.1e-30	Phospholipase/Carboxylesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52700 AT1G52700 AT1G52700 AT1G52700 AT1G52700 AT1G52700 AT3G15650 AT3G15650 AT3G15650
fragaria_vesca	FvH4_6g30430 FvH4_6g30430
malus_domestica	MD09G1221600.v1.1 MD17G1203800.v1.1
prunus_persica	Prupe.3G078700_v2.0.a1 Prupe.3G078700_v2.0.a1 Prupe.3G078700_v2.0.a1 Prupe.3G078700_v2.0.a1 Prupe.3G078700_v2.0.a1 Prupe.3G078700_v2.0.a1 Prupe.3G078700_v2.0.a1
pyrus_communis	pycom17g20740
rosa_chinensis	RchiOBHm_Chr2g0136771
rosa_laevigata	RLG00000019571
rosa_multiflora	Rmu_sc0001299.1_g000019
rosa_roxburghii	Rroxscaffold_2G00108080
rosa_rugosa	Rorug02G0333000 Rorug02G0333000 Rorug02G0333000 Rorug02G0333000 Rorug02G0333100 Rorug02G0333100
rosa_samantha	Rh2BG390500 Rh2CG370300 Rh2DG407100
rosa_wichuraiana	Rw2G031390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	600
AclWI	GGATC	1 cut(s)	200
AcuI	CTGAAG	1 cut(s)	297
AflIII	ACRYGT	1 cut(s)	73
AgsI	TTSAA	1 cut(s)	260
AjnI	CCWGG	1 cut(s)	499
AluBI	AGCT	5 cut(s)	6, 157, 344, 353, 513
AluI	AGCT	5 cut(s)	6, 157, 344, 353, 513
AlwI	GGATC	1 cut(s)	200
Ama87I	CYCGRG	1 cut(s)	56
AoxI	GGCC	3 cut(s)	83, 283, 399
ApeKI	GCWGC	5 cut(s)	317, 341, 392, 545, 557
AspS9I	GGNCC	3 cut(s)	84, 284, 400
AvaI	CYCGRG	1 cut(s)	56
BbsI	GAAGAC	1 cut(s)	18
BbvI	GCAGC	5 cut(s)	329, 353, 379, 532, 544
BccI	CCATC	1 cut(s)	275
BciT130I	CCWGG	1 cut(s)	501
BfmI	CTRYAG	1 cut(s)	575
BisI	GCNGC	5 cut(s)	318, 342, 393, 546, 558
BlpI	GCTNAGC	1 cut(s)	345
BlsI	GCNGC	5 cut(s)	319, 343, 394, 547, 559
Bme1390I	CCNGG	1 cut(s)	501
BmeT110I	CYCGRG	1 cut(s)	56
BmgT120I	GGNCC	3 cut(s)	84, 284, 400
BmrFI	CCNGG	1 cut(s)	501
BmrI	ACTGGG	2 cut(s)	137, 304
BmsI	GCATC	3 cut(s)	158, 298, 569
BmuI	ACTGGG	2 cut(s)	137, 304
BpiI	GAAGAC	1 cut(s)	18
Bpu1102I	GCTNAGC	1 cut(s)	345
BpuEI	CTTGAG	2 cut(s)	127, 535
BsaJI	CCNNGG	1 cut(s)	583
Bse1I	ACTGG	2 cut(s)	132, 299
Bse3DI	GCAATG	1 cut(s)	402
BseBI	CCWGG	1 cut(s)	501
BseDI	CCNNGG	1 cut(s)	583
BseMI	GCAATG	1 cut(s)	402
BseMII	CTCAG	3 cut(s)	167, 336, 458
BseNI	ACTGG	2 cut(s)	132, 299
BseXI	GCAGC	5 cut(s)	329, 353, 379, 532, 544
BshFI	GGCC	3 cut(s)	85, 285, 401
BsiHKCI	CYCGRG	1 cut(s)	56
BslFI	GGGAC	1 cut(s)	146
BsmFI	GGGAC	1 cut(s)	146
BsnI	GGCC	3 cut(s)	85, 285, 401
BsoBI	CYCGRG	1 cut(s)	56
Bsp143I	GATC	1 cut(s)	192
Bsp1720I	GCTNAGC	1 cut(s)	345
Bsp19I	CCATGG	1 cut(s)	583
BspACI	CCGC	1 cut(s)	600
BspANI	GGCC	3 cut(s)	85, 285, 401
BspCNI	CTCAG	3 cut(s)	166, 337, 459
BspMAI	CTGCAG	1 cut(s)	579
BspPI	GGATC	1 cut(s)	200
BsrDI	GCAATG	1 cut(s)	402
BsrI	ACTGG	2 cut(s)	132, 299
BssECI	CCNNGG	1 cut(s)	583
BssMI	GATC	1 cut(s)	192
BssT1I	CCWWGG	1 cut(s)	583
Bst2UI	CCWGG	1 cut(s)	501
BstAPI	GCANNNNNTGC	1 cut(s)	554
BstC8I	GCNNGC	3 cut(s)	351, 494, 555
BstDEI	CTNAG	4 cut(s)	153, 345, 467, 485
BstDSI	CCRYGG	1 cut(s)	583
BstKTI	GATC	1 cut(s)	195
BstMBI	GATC	1 cut(s)	192
BstMWI	GCNNNNNNNGC	4 cut(s)	317, 350, 398, 554
BstNI	CCWGG	1 cut(s)	501
BstNSI	RCATGY	1 cut(s)	77
BstSCI	CCNGG	1 cut(s)	499
BstSFI	CTRYAG	1 cut(s)	575
BstV1I	GCAGC	5 cut(s)	329, 353, 379, 532, 544
BstV2I	GAAGAC	1 cut(s)	18
BstX2I	RGATCY	1 cut(s)	192
BstXI	CCANNNNNNTGG	2 cut(s)	294, 590
BstYI	RGATCY	1 cut(s)	192
BsuRI	GGCC	3 cut(s)	85, 285, 401
BtgI	CCRYGG	1 cut(s)	583
BtsI	GCAGTG	2 cut(s)	246, 584
BtsIMutI	CAGTG	2 cut(s)	246, 584
Cac8I	GCNNGC	3 cut(s)	351, 494, 555
Cfr13I	GGNCC	3 cut(s)	84, 284, 400
CviAII	CATG	4 cut(s)	74, 252, 539, 584
DdeI	CTNAG	4 cut(s)	153, 345, 467, 485
DpnI	GATC	1 cut(s)	194
DpnII	GATC	1 cut(s)	192
Eco130I	CCWWGG	1 cut(s)	583
Eco57I	CTGAAG	1 cut(s)	297
Eco88I	CYCGRG	1 cut(s)	56
EcoRII	CCWGG	1 cut(s)	499
EcoT14I	CCWWGG	1 cut(s)	583
ErhI	CCWWGG	1 cut(s)	583
FaeI	CATG	4 cut(s)	77, 255, 542, 587
FaqI	GGGAC	1 cut(s)	146
FatI	CATG	4 cut(s)	73, 251, 538, 583
Fnu4HI	GCNGC	5 cut(s)	318, 342, 393, 546, 558
Fsp4HI	GCNGC	5 cut(s)	318, 342, 393, 546, 558
GluI	GCNGC	5 cut(s)	318, 342, 393, 546, 558
HaeIII	GGCC	3 cut(s)	85, 285, 401
Hin1II	CATG	4 cut(s)	77, 255, 542, 587
HinfI	GANTC	1 cut(s)	164
Hpy166II	GTNNAC	1 cut(s)	331
Hpy188I	TCNGA	2 cut(s)	277, 468
Hpy8I	GTNNAC	1 cut(s)	331
HpyAV	CCTTC	2 cut(s)	60, 524
HpyCH4IV	ACGT	1 cut(s)	13
HpyCH4V	TGCA	8 cut(s)	149, 246, 251, 395, 413, 548, 560, 577
HpyF10VI	GCNNNNNNNGC	4 cut(s)	317, 350, 398, 554
HpyF3I	CTNAG	4 cut(s)	153, 345, 467, 485
HpySE526I	ACGT	1 cut(s)	13
Hsp92II	CATG	4 cut(s)	77, 255, 542, 587
Kzo9I	GATC	1 cut(s)	192
LmnI	GCTCC	3 cut(s)	211, 503, 510
Lsp1109I	GCAGC	5 cut(s)	329, 353, 379, 532, 544
LweI	GCATC	3 cut(s)	158, 298, 569
MaeII	ACGT	1 cut(s)	13
MaeIII	GTNAC	2 cut(s)	534, 564
MalI	GATC	1 cut(s)	194
MboI	GATC	1 cut(s)	192
MboII	GAAGA	3 cut(s)	18, 60, 290
MflI	RGATCY	1 cut(s)	192
MmeI	TCCRAC	2 cut(s)	224, 460
MnlI	CCTC	6 cut(s)	75, 83, 368, 462, 468, 535
MseI	TTAA	1 cut(s)	360
MslI	CAYNNNNRTG	1 cut(s)	588
MspA1I	CMGCKG	2 cut(s)	344, 353
MspR9I	CCNGG	1 cut(s)	501
MvaI	CCWGG	1 cut(s)	501
MwoI	GCNNNNNNNGC	4 cut(s)	317, 350, 398, 554
NcoI	CCATGG	1 cut(s)	583
NdeII	GATC	1 cut(s)	192
NlaIII	CATG	4 cut(s)	77, 255, 542, 587
NmuCI	GTSAC	1 cut(s)	534
NspI	RCATGY	1 cut(s)	77
PaeR7I	CTCGAG	1 cut(s)	56
PciI	ACATGT	1 cut(s)	73
PfeI	GAWTC	1 cut(s)	164
PfoI	TCCNGGA	1 cut(s)	499
PkrI	GCNGC	5 cut(s)	319, 343, 394, 547, 559
PscI	ACATGT	1 cut(s)	73
Psp6I	CCWGG	1 cut(s)	499
PspGI	CCWGG	1 cut(s)	499
PspPI	GGNCC	3 cut(s)	84, 284, 400
PspXI	VCTCGAGB	1 cut(s)	56
PstI	CTGCAG	1 cut(s)	579
PsuI	RGATCY	1 cut(s)	192
PvuII	CAGCTG	2 cut(s)	344, 353
RseI	CAYNNNNRTG	1 cut(s)	588
SaqAI	TTAA	1 cut(s)	360
SatI	GCNGC	5 cut(s)	318, 342, 393, 546, 558
Sau3AI	GATC	1 cut(s)	192
Sau96I	GGNCC	3 cut(s)	84, 284, 400
ScrFI	CCNGG	1 cut(s)	501
SetI	ASST	7 cut(s)	8, 16, 159, 346, 355, 437, 515
SfaNI	GCATC	3 cut(s)	158, 298, 569
SfcI	CTRYAG	1 cut(s)	575
Sfr274I	CTCGAG	1 cut(s)	56
SlaI	CTCGAG	1 cut(s)	56
SmiMI	CAYNNNNRTG	1 cut(s)	588
SmlI	CTYRAG	3 cut(s)	56, 142, 514
SmoI	CTYRAG	3 cut(s)	56, 142, 514
SsiI	CCGC	1 cut(s)	600
StyD4I	CCNGG	1 cut(s)	499
StyI	CCWWGG	1 cut(s)	583
TaiI	ACGT	1 cut(s)	16
TaqI	TCGA	2 cut(s)	46, 57
TfiI	GAWTC	1 cut(s)	164
Tru1I	TTAA	1 cut(s)	360
Tru9I	TTAA	1 cut(s)	360
TscAI	CASTG	2 cut(s)	253, 584
TseFI	GTSAC	1 cut(s)	534
TseI	GCWGC	5 cut(s)	317, 341, 392, 545, 557
Tsp45I	GTSAC	1 cut(s)	534
TspGWI	ACGGA	1 cut(s)	138
TspRI	CASTG	2 cut(s)	253, 584
XceI	RCATGY	1 cut(s)	77
XcmI	CCANNNNNNNNNTGG	1 cut(s)	186
XhoI	CTCGAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.