Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0003505

Physical Location & Seq

Genomic Coordinates Forward (+)

19172963 .. 19175685

Gene Structure 2723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g20740.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGATGAGCTATACGCGTTCTAACATGTCTTCCGGTAGCAGAACTGCTAGAAGAATTGAGTTTGGTAGGACACAAGTGGTGAGGCCCAAAGGAAGGCATCAAGCAACAATGGTCTGGCTGCATGGACTTGGGGACAACGGTTCAAGCACATCTCAAATGTTGGAATCTCTACCTCTTCCAAATATTAAGTGGATCTGCCCAACTGCTCCTAAACGTCCTGTGGCTATGCTCGGTGGATTTGCTTGCACTGCATGGTTCGCAGTTGGAGAGCTTTCAGACGATGGTCCAGATGATTGGGAGAGTTTAGATGCTTCAGCAGCGCATATTGCAAACTTGTTGTCATCTGAGCCAGCTGATGTTAAAGTCGGTATTGGAGGCTTTAGCATGGGTGCTGCAATGGCCCTTTACTCTGCAACTTGTTATGCTGCGGGTAGGTACGGAAATGGGAACCCATATCCTCTCAATCTGAGGGCAGTTGTTGGACTAAGTGGCTGGCTTCCAGGAGCGAGGAGCTTACGGAACAAAATAGAAGGGTCACATGAGGCTTTGAGGCGTGCCGCATCATTACCCATTTTGCAATGCCATGGAAGCAGTGATGATGTAGTGCCCTACAACTATGGAGAGAAATCAGTCCACTGCTTGACTTCAGCAGGATTCCGATACCTTTCGTTCAAACCCTTTGAAGGGCTCGGTCACTACACTATTCCCAAAGAGATGAATGAAGTCTCCAGTTGGCTTTCTGCAAGGCTGGGGCTTGATGGTTATCGCTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0002084 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0006928 GO:0006935 GO:0007275 GO:0007399 GO:0007409 GO:0007411 GO:0008150 GO:0008152 GO:0008474 GO:0009056 GO:0009057 GO:0009605 GO:0009653 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016790 GO:0019538 GO:0022008 GO:0030030 GO:0030154 GO:0030163 GO:0030182 GO:0031175 GO:0032501 GO:0032502 GO:0032989 GO:0032990 GO:0035601 GO:0036211 GO:0040011 GO:0042157 GO:0042159 GO:0042221 GO:0042330 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048468 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0050896 GO:0052689 GO:0061564 GO:0071704 GO:0071840 GO:0097485 GO:0098599 GO:0098732 GO:0098734 GO:0120036 GO:0120039 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Abhydrolase_2

Protein Analysis

258

Amino Acids

27.75

Weight (kDa)

8.8

Isoelectric Point (pI)

53.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52700 AT1G52700 AT1G52700 AT1G52700 AT1G52700 AT1G52700 AT3G15650 AT3G15650 AT3G15650
fragaria_vesca	FvH4_6g30430 FvH4_6g30430
malus_domestica	MD09G1221600.v1.1 MD17G1203800.v1.1
prunus_persica	Prupe.3G078700_v2.0.a1 Prupe.3G078700_v2.0.a1 Prupe.3G078700_v2.0.a1 Prupe.3G078700_v2.0.a1 Prupe.3G078700_v2.0.a1 Prupe.3G078700_v2.0.a1 Prupe.3G078700_v2.0.a1
pyrus_communis	pycom17g20740
rosa_chinensis	RchiOBHm_Chr2g0136771
rosa_laevigata	RLG00000019571
rosa_multiflora	Rmu_sc0001299.1_g000019
rosa_roxburghii	Rroxscaffold_2G00108080
rosa_rugosa	Rorug02G0333000 Rorug02G0333000 Rorug02G0333000 Rorug02G0333000 Rorug02G0333100 Rorug02G0333100
rosa_samantha	Rh2BG390500 Rh2CG370300 Rh2DG407100
rosa_wichuraiana	Rw2G031390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	16
AciI	CCGC	2 cut(s)	428, 558
AclWI	GGATC	1 cut(s)	200
AcuI	CTGAAG	2 cut(s)	297, 630
AfaI	GTAC	1 cut(s)	437
AfiI	CCNNNNNNNGG	3 cut(s)	93, 683, 684
AflIII	ACRYGT	2 cut(s)	14, 24
AgsI	TTSAA	3 cut(s)	144, 673, 683
AjnI	CCWGG	1 cut(s)	499
AluBI	AGCT	4 cut(s)	9, 271, 353, 513
AluI	AGCT	4 cut(s)	9, 271, 353, 513
Alw26I	GTCTC	1 cut(s)	730
AlwI	GGATC	1 cut(s)	200
AoxI	GGCC	2 cut(s)	83, 399
ApeKI	GCWGC	4 cut(s)	118, 317, 392, 425
ArsI	GACNNNNNNTTYG	2 cut(s)	323, 355
AspLEI	GCGC	1 cut(s)	322
AspS9I	GGNCC	3 cut(s)	84, 284, 400
AsuHPI	GGTGA	1 cut(s)	91
AvaII	GGWCC	1 cut(s)	284
BaeGI	GKGCMC	1 cut(s)	609
BanII	GRGCYC	1 cut(s)	690
BbsI	GAAGAC	1 cut(s)	21
BbvI	GCAGC	4 cut(s)	105, 329, 379, 412
BccI	CCATC	2 cut(s)	275, 752
BciT130I	CCWGG	1 cut(s)	501
BcoDI	GTCTC	1 cut(s)	730
BfaI	CTAG	1 cut(s)	48
BisI	GCNGC	5 cut(s)	119, 318, 393, 426, 558
BlsI	GCNGC	5 cut(s)	120, 319, 394, 427, 559
Bme1390I	CCNGG	1 cut(s)	501
Bme18I	GGWCC	1 cut(s)	284
BmgT120I	GGNCC	3 cut(s)	84, 284, 400
BmiI	GGNNCC	1 cut(s)	449
BmrFI	CCNGG	1 cut(s)	501
BmsI	GCATC	3 cut(s)	106, 298, 569
BoxI	GACNNNNGTC	1 cut(s)	282
BpiI	GAAGAC	1 cut(s)	21
BpmI	CTGGAG	1 cut(s)	712
BsaBI	GATNNNNATC	1 cut(s)	762
BsaJI	CCNNGG	1 cut(s)	583
BsaWI	WCCGGW	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	3 cut(s)	93, 683, 684
Bse1I	ACTGG	1 cut(s)	729
Bse3DI	GCAATG	2 cut(s)	402, 584
Bse8I	GATNNNNATC	1 cut(s)	762
BseBI	CCWGG	1 cut(s)	501
BseDI	CCNNGG	1 cut(s)	583
BseJI	GATNNNNATC	1 cut(s)	762
BseLI	CCNNNNNNNGG	3 cut(s)	93, 683, 684
BseMI	GCAATG	2 cut(s)	402, 584
BseMII	CTCAG	2 cut(s)	336, 458
BseNI	ACTGG	1 cut(s)	729
BseRI	GAGGAG	1 cut(s)	523
BseSI	GKGCMC	1 cut(s)	609
BseXI	GCAGC	4 cut(s)	105, 329, 379, 412
BseYI	CCCAGC	1 cut(s)	748
Bsh1236I	CGCG	1 cut(s)	16
BshFI	GGCC	2 cut(s)	85, 401
BsiSI	CCGG	1 cut(s)	33
BslFI	GGGAC	1 cut(s)	146
BslI	CCNNNNNNNGG	3 cut(s)	93, 683, 684
BsmAI	GTCTC	1 cut(s)	730
BsmFI	GGGAC	1 cut(s)	146
BsnI	GGCC	2 cut(s)	85, 401
Bsp1286I	GDGCHC	2 cut(s)	609, 690
Bsp143I	GATC	1 cut(s)	192
Bsp19I	CCATGG	1 cut(s)	583
BspACI	CCGC	2 cut(s)	428, 558
BspANI	GGCC	2 cut(s)	85, 401
BspCNI	CTCAG	2 cut(s)	337, 459
BspFNI	CGCG	1 cut(s)	16
BspLI	GGNNCC	1 cut(s)	449
BspPI	GGATC	1 cut(s)	200
BsrDI	GCAATG	2 cut(s)	402, 584
BsrI	ACTGG	1 cut(s)	729
BssECI	CCNNGG	1 cut(s)	583
BssMI	GATC	1 cut(s)	192
BssT1I	CCWWGG	1 cut(s)	583
Bst2UI	CCWGG	1 cut(s)	501
Bst4CI	ACNGT	1 cut(s)	140
Bst6I	CTCTTC	1 cut(s)	180
BstC8I	GCNNGC	4 cut(s)	244, 351, 494, 555
BstDEI	CTNAG	3 cut(s)	345, 467, 485
BstDSI	CCRYGG	1 cut(s)	583
BstFNI	CGCG	1 cut(s)	16
BstHHI	GCGC	1 cut(s)	322
BstKTI	GATC	1 cut(s)	195
BstMAI	GTCTC	1 cut(s)	730
BstMBI	GATC	1 cut(s)	192
BstMWI	GCNNNNNNNGC	6 cut(s)	248, 257, 317, 326, 398, 588
BstNI	CCWGG	1 cut(s)	501
BstNSI	RCATGY	1 cut(s)	28
BstPAI	GACNNNNGTC	1 cut(s)	282
BstSCI	CCNGG	1 cut(s)	499
BstSLI	GKGCMC	1 cut(s)	609
BstUI	CGCG	1 cut(s)	16
BstV1I	GCAGC	4 cut(s)	105, 329, 379, 412
BstV2I	GAAGAC	1 cut(s)	21
BstX2I	RGATCY	1 cut(s)	192
BstXI	CCANNNNNNTGG	1 cut(s)	294
BstYI	RGATCY	1 cut(s)	192
BsuRI	GGCC	2 cut(s)	85, 401
BtgI	CCRYGG	1 cut(s)	583
BtsI	GCAGTG	3 cut(s)	246, 598, 634
BtsIMutI	CAGTG	3 cut(s)	246, 598, 634
Cac8I	GCNNGC	4 cut(s)	244, 351, 494, 555
CfoI	GCGC	1 cut(s)	322
Cfr13I	GGNCC	3 cut(s)	84, 284, 400
Csp6I	GTAC	1 cut(s)	436
CviAII	CATG	6 cut(s)	25, 122, 252, 385, 539, 584
CviQI	GTAC	1 cut(s)	436
DdeI	CTNAG	3 cut(s)	345, 467, 485
DpnI	GATC	1 cut(s)	194
DpnII	GATC	1 cut(s)	192
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	583
Eco24I	GRGCYC	1 cut(s)	690
Eco47I	GGWCC	1 cut(s)	284
Eco57I	CTGAAG	2 cut(s)	297, 630
EcoRII	CCWGG	1 cut(s)	499
EcoT14I	CCWWGG	1 cut(s)	583
EcoT38I	GRGCYC	1 cut(s)	690
ErhI	CCWWGG	1 cut(s)	583
FaeI	CATG	6 cut(s)	28, 125, 255, 388, 542, 587
FaqI	GGGAC	1 cut(s)	146
FatI	CATG	6 cut(s)	24, 121, 251, 384, 538, 583
FauI	CCCGC	1 cut(s)	421
Fnu4HI	GCNGC	5 cut(s)	119, 318, 393, 426, 558
FriOI	GRGCYC	1 cut(s)	690
Fsp4HI	GCNGC	5 cut(s)	119, 318, 393, 426, 558
FspBI	CTAG	1 cut(s)	48
GlaI	GCGC	1 cut(s)	321
GluI	GCNGC	5 cut(s)	119, 318, 393, 426, 558
GsaI	CCCAGC	1 cut(s)	752
GsuI	CTGGAG	1 cut(s)	712
HaeIII	GGCC	2 cut(s)	85, 401
HapII	CCGG	1 cut(s)	33
HhaI	GCGC	1 cut(s)	322
Hin1II	CATG	6 cut(s)	28, 125, 255, 388, 542, 587
Hin6I	GCGC	1 cut(s)	320
HinP1I	GCGC	1 cut(s)	320
HinfI	GANTC	2 cut(s)	164, 654
HpaII	CCGG	1 cut(s)	33
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	1 cut(s)	634
Hpy188I	TCNGA	4 cut(s)	277, 346, 468, 659
Hpy188III	TCNNGA	1 cut(s)	287
Hpy8I	GTNNAC	1 cut(s)	634
HpyAV	CCTTC	3 cut(s)	87, 524, 677
HpyCH4III	ACNGT	1 cut(s)	140
HpyCH4IV	ACGT	1 cut(s)	214
HpyCH4V	TGCA	8 cut(s)	121, 246, 251, 329, 395, 413, 577, 743
HpyF10VI	GCNNNNNNNGC	6 cut(s)	248, 257, 317, 326, 398, 588
HpyF3I	CTNAG	3 cut(s)	345, 467, 485
HpySE526I	ACGT	1 cut(s)	214
Hsp92II	CATG	6 cut(s)	28, 125, 255, 388, 542, 587
HspAI	GCGC	1 cut(s)	320
Kzo9I	GATC	1 cut(s)	192
LmnI	GCTCC	3 cut(s)	211, 503, 510
Lsp1109I	GCAGC	4 cut(s)	105, 329, 379, 412
LweI	GCATC	3 cut(s)	106, 298, 569
MaeI	CTAG	1 cut(s)	48
MaeII	ACGT	1 cut(s)	214
MaeIII	GTNAC	2 cut(s)	534, 692
MalI	GATC	1 cut(s)	194
MboI	GATC	1 cut(s)	192
MboII	GAAGA	3 cut(s)	21, 63, 167
MflI	RGATCY	1 cut(s)	192
MhlI	GDGCHC	2 cut(s)	609, 690
MluCI	AATT	1 cut(s)	54
MluI	ACGCGT	1 cut(s)	14
MmeI	TCCRAC	3 cut(s)	141, 244, 460
MnlI	CCTC	8 cut(s)	75, 183, 368, 462, 468, 501, 535, 543
MseI	TTAA	2 cut(s)	186, 360
MspA1I	CMGCKG	1 cut(s)	353
MspI	CCGG	1 cut(s)	33
MspR9I	CCNGG	1 cut(s)	501
MvaI	CCWGG	1 cut(s)	501
MvnI	CGCG	1 cut(s)	16
MwoI	GCNNNNNNNGC	6 cut(s)	248, 257, 317, 326, 398, 588
NcoI	CCATGG	1 cut(s)	583
NdeII	GATC	1 cut(s)	192
NlaIII	CATG	6 cut(s)	28, 125, 255, 388, 542, 587
NlaIV	GGNNCC	1 cut(s)	449
NmuCI	GTSAC	2 cut(s)	534, 692
NspI	RCATGY	1 cut(s)	28
PciI	ACATGT	1 cut(s)	24
PfeI	GAWTC	2 cut(s)	164, 654
PfoI	TCCNGGA	1 cut(s)	499
PkrI	GCNGC	5 cut(s)	120, 319, 394, 427, 559
PscI	ACATGT	1 cut(s)	24
PshAI	GACNNNNGTC	1 cut(s)	282
Psp6I	CCWGG	1 cut(s)	499
PspFI	CCCAGC	1 cut(s)	748
PspGI	CCWGG	1 cut(s)	499
PspN4I	GGNNCC	1 cut(s)	449
PspPI	GGNCC	3 cut(s)	84, 284, 400
PsuI	RGATCY	1 cut(s)	192
PvuII	CAGCTG	1 cut(s)	353
RsaI	GTAC	1 cut(s)	437
RsaNI	GTAC	1 cut(s)	436
SaqAI	TTAA	2 cut(s)	186, 360
SatI	GCNGC	5 cut(s)	119, 318, 393, 426, 558
Sau3AI	GATC	1 cut(s)	192
Sau96I	GGNCC	3 cut(s)	84, 284, 400
ScrFI	CCNGG	1 cut(s)	501
SduI	GDGCHC	2 cut(s)	609, 690
SetI	ASST	8 cut(s)	11, 175, 217, 273, 355, 437, 515, 666
SfaNI	GCATC	3 cut(s)	106, 298, 569
SinI	GGWCC	1 cut(s)	284
Sse9I	AATT	1 cut(s)	54
SsiI	CCGC	2 cut(s)	428, 558
SspI	AATATT	1 cut(s)	184
SspMI	CTAG	1 cut(s)	48
StyD4I	CCNGG	1 cut(s)	499
StyI	CCWWGG	1 cut(s)	583
TaaI	ACNGT	1 cut(s)	140
TaiI	ACGT	1 cut(s)	217
TaqII	GACCGA	1 cut(s)	680
TasI	AATT	1 cut(s)	54
TauI	GCSGC	1 cut(s)	560
TfiI	GAWTC	2 cut(s)	164, 654
Tru1I	TTAA	2 cut(s)	186, 360
Tru9I	TTAA	2 cut(s)	186, 360
TscAI	CASTG	3 cut(s)	253, 598, 641
TseFI	GTSAC	2 cut(s)	534, 692
TseI	GCWGC	4 cut(s)	118, 317, 392, 425
Tsp45I	GTSAC	2 cut(s)	534, 692
TspDTI	ATGAA	2 cut(s)	731, 735
TspGWI	ACGGA	2 cut(s)	453, 532
TspRI	CASTG	3 cut(s)	253, 598, 641
VpaK11BI	GGWCC	1 cut(s)	284
XceI	RCATGY	1 cut(s)	28
XcmI	CCANNNNNNNNNTGG	1 cut(s)	186
XspI	CTAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.