Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008520

Physical Location & Seq

Genomic Coordinates Forward (+)

5471735 .. 5473360

Gene Structure 1626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G16150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGGTGGGTGGGCAATCGCAGTACACGGTGGTGCCGGTATCGACCCTAATCTTCCGGCGGAGAGACAAGAAGAGGCTAAACAGCTTTTAACTCGTTGTCTCAACCTCGGCATAATAGCTTTGCGTTCCAATGTCTCCGCCATTGACGTCGTTGAGCTCGTCATTAGAGAATTGGAGACGGATCCTCTGTTTAATTCAGGCCGTGGATCTGCTTTGACGGAAAAAGGAACGGTTGAGATGGAAGCTAGCATTATGGACGGTACGAAGAGACGATGCGGTGCCGTTTCGGGGATAACCACCGTGAAAAATCCTATATCTCTTGCTCGTCTCGTCATGGACAAATCTCCCCACTCTTACCTTGCTTTCTCAGGTGCAGAGGATTTCGCCCGCAAACAGGGAGTTGAAATTGTGGACAACGAGTACTTTGTCACGGACGACAACGTAGGAATGCTCAAGTTGGCCAAGGAAGCTAACTCCATCTTGTTTGATTACCGGATTCCGCCGATGGGATGTGCCGGTGCAGCTGCGACCGACAGTCCAATCCAAATGAACGGTCTTCCGATCAGCATTTACGCACCGGAGACAGTCGGGTGCGTTGTGGTTGACGGGAAAGGACATTGTGCCGCCGGGACATCCACGGGTGGTTTAATGAACAAGATGATGGGAAGGATTGGTGACTCGCCGCTGATAGGAGCCGGGACGTATGCGTCGGAGTTTTGTGGTGTGTCGTGTACCGGAGAAGGAGAAGCCATTATAAGAGCAACCCTAGCTCGTGATGTGTCAGCTGTTATGGAGTATAAAGGACTTAACCTCCAAGAAGCGGTTGATTACGTCATCAAGCATCGACTTGACGAAGGGTTCGCTGGACTCATTGCTGTCTCGAATAAAGGAGAGGTGGTTTGTGGTTTTAACTCTAATGGGATGTTCAGGGGATGTGCAACTGAGGATGGATTCATGGAGGTTGCTATTTGGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004067 GO:0004175 GO:0004190 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0016810 GO:0016811 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asparaginase_2

Protein Analysis

325

Amino Acids

34.34

Weight (kDa)

4.87

Isoelectric Point (pI)

28.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asparaginase_2	PF01112	4 - 323	1e-103	Asparaginase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16150
fragaria_vesca	FvH4_2g33770
malus_domestica	MD08G1092600.v1.1 MD15G1077000.v1.1
prunus_persica	Prupe.1G430400_v2.0.a1 Prupe.1G430400_v2.0.a1 Prupe.1G430400_v2.0.a1
pyrus_communis	pycom08g07530 pycom15g07170
rosa_chinensis	RchiOBHm_Chr4g0445551 RchiOBHm_Chr6g0308781
rosa_laevigata	RLG00000010619
rosa_multiflora	Rmu_sc0000871.1_g000036 Rmu_sc0009346.1_g000001 Rmu_sc0027152.1_g000001 Rmu_sc0027153.1_g000001 Rmu_sc0027154.1_g000001
rosa_roxburghii	Rroxscaffold_7G00159940
rosa_rugosa	Rorug06G0368100
rosa_samantha	Rh4DG432200 Rh6CG494400 Rh6DG479700
rosa_wichuraiana	Rw6G041790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	755
AasI	GACNNNNNNGTC	1 cut(s)	706
AatII	GACGTC	1 cut(s)	150
AccB1I	GGYRCC	2 cut(s)	32, 278
AciI	CCGC	8 cut(s)	59, 138, 276, 388, 500, 624, 683, 821
AclWI	GGATC	3 cut(s)	176, 189, 214
AcoI	YGGCCR	1 cut(s)	459
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	4 cut(s)	24, 262, 422, 733
AfiI	CCNNNNNNNGG	5 cut(s)	288, 394, 506, 689, 820
AgsI	TTSAA	1 cut(s)	404
AhdI	GACNNNNNGTC	1 cut(s)	534
AleI	CACNNNNGTG	1 cut(s)	30
AluBI	AGCT	8 cut(s)	85, 119, 157, 245, 470, 524, 770, 785
AluI	AGCT	8 cut(s)	85, 119, 157, 245, 470, 524, 770, 785
Alw21I	GWGCWC	1 cut(s)	159
Alw26I	GTCTC	8 cut(s)	58, 104, 139, 170, 262, 332, 575, 883
AlwI	GGATC	3 cut(s)	176, 189, 214
AoxI	GGCC	2 cut(s)	199, 459
ApeKI	GCWGC	2 cut(s)	521, 524
ArsI	GACNNNNNNTTYG	4 cut(s)	538, 570, 842, 874
AsuC2I	CCSGG	2 cut(s)	628, 697
AsuHPI	GGTGA	1 cut(s)	686
AsuNHI	GCTAGC	1 cut(s)	245
BalI	TGGCCA	1 cut(s)	461
BamHI	GGATCC	1 cut(s)	181
BanI	GGYRCC	2 cut(s)	32, 278
BanII	GRGCYC	1 cut(s)	159
BauI	CACGAG	1 cut(s)	771
BbsI	GAAGAC	1 cut(s)	548
Bbv12I	GWGCWC	1 cut(s)	159
BbvI	GCAGC	2 cut(s)	511, 533
BccI	CCATC	5 cut(s)	232, 485, 499, 655, 941
BceAI	ACGGC	2 cut(s)	186, 266
BcnI	CCSGG	2 cut(s)	628, 697
BcoDI	GTCTC	8 cut(s)	58, 104, 139, 170, 262, 332, 575, 883
BfaI	CTAG	2 cut(s)	246, 767
BisI	GCNGC	4 cut(s)	522, 525, 624, 683
BlsI	GCNGC	4 cut(s)	523, 526, 625, 684
BmcAI	AGTACT	1 cut(s)	422
Bme1390I	CCNGG	2 cut(s)	628, 697
BmeRI	GACNNNNNGTC	1 cut(s)	534
BmiI	GGNNCC	4 cut(s)	34, 183, 280, 694
BmrFI	CCNGG	2 cut(s)	628, 697
BmsI	GCATC	2 cut(s)	263, 850
BmtI	GCTAGC	1 cut(s)	249
BpiI	GAAGAC	1 cut(s)	548
BpuEI	CTTGAG	1 cut(s)	437
BpuMI	CCSGG	2 cut(s)	628, 697
BsaHI	GRCGYC	1 cut(s)	147
BsaJI	CCNNGG	4 cut(s)	106, 202, 462, 636
BsaWI	WCCGGW	3 cut(s)	492, 577, 734
BsaXI	ACNNNNNCTCC	4 cut(s)	795, 825, 882, 912
Bsc4I	CCNNNNNNNGG	5 cut(s)	288, 394, 506, 689, 820
Bse118I	RCCGGY	2 cut(s)	35, 515
Bse3DI	GCAATG	1 cut(s)	870
BseDI	CCNNGG	4 cut(s)	106, 202, 462, 636
BseGI	GGATG	5 cut(s)	515, 632, 927, 938, 952
BseLI	CCNNNNNNNGG	5 cut(s)	288, 394, 506, 689, 820
BseMI	GCAATG	1 cut(s)	870
BseMII	CTCAG	2 cut(s)	381, 933
BseXI	GCAGC	2 cut(s)	511, 533
BsgI	GTGCAG	2 cut(s)	393, 540
Bsh1285I	CGRYCG	1 cut(s)	531
BshFI	GGCC	2 cut(s)	201, 461
BshNI	GGYRCC	2 cut(s)	32, 278
BsiEI	CGRYCG	1 cut(s)	531
BsiHKAI	GWGCWC	1 cut(s)	159
BsiSI	CCGG	8 cut(s)	36, 56, 493, 516, 578, 627, 696, 735
BslFI	GGGAC	2 cut(s)	643, 712
BslI	CCNNNNNNNGG	5 cut(s)	288, 394, 506, 689, 820
BsmAI	GTCTC	8 cut(s)	58, 104, 139, 170, 262, 332, 575, 883
BsmBI	CGTCTC	3 cut(s)	170, 262, 332
BsmFI	GGGAC	2 cut(s)	643, 712
BsmI	GAATGC	1 cut(s)	453
BsnI	GGCC	2 cut(s)	201, 461
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	3 cut(s)	181, 206, 561
BspACI	CCGC	8 cut(s)	59, 138, 276, 388, 500, 624, 683, 821
BspANI	GGCC	2 cut(s)	201, 461
BspCNI	CTCAG	2 cut(s)	380, 934
BspLI	GGNNCC	4 cut(s)	34, 183, 280, 694
BspOI	GCTAGC	1 cut(s)	249
BspPI	GGATC	3 cut(s)	176, 189, 214
BspT107I	GGYRCC	2 cut(s)	32, 278
BsrDI	GCAATG	1 cut(s)	870
BsrFI	RCCGGY	2 cut(s)	35, 515
BssAI	RCCGGY	2 cut(s)	35, 515
BssECI	CCNNGG	4 cut(s)	106, 202, 462, 636
BssMI	GATC	3 cut(s)	181, 206, 561
BssNI	GRCGYC	1 cut(s)	147
BssSI	CACGAG	1 cut(s)	771
BssT1I	CCWWGG	1 cut(s)	462
Bst2BI	CACGAG	1 cut(s)	771
Bst4CI	ACNGT	7 cut(s)	29, 232, 260, 301, 536, 554, 586
Bst6I	CTCTTC	2 cut(s)	66, 260
BstACI	GRCGYC	1 cut(s)	147
BstC8I	GCNNGC	2 cut(s)	247, 388
BstDEI	CTNAG	2 cut(s)	367, 942
BstDSI	CCRYGG	2 cut(s)	202, 636
BstF5I	GGATG	5 cut(s)	515, 632, 927, 938, 952
BstKTI	GATC	3 cut(s)	184, 209, 564
BstMAI	GTCTC	8 cut(s)	58, 104, 139, 170, 262, 332, 575, 883
BstMBI	GATC	3 cut(s)	181, 206, 561
BstMCI	CGRYCG	1 cut(s)	531
BstMWI	GCNNNNNNNGC	3 cut(s)	467, 521, 767
BstSCI	CCNGG	2 cut(s)	626, 695
BstV1I	GCAGC	2 cut(s)	511, 533
BstV2I	GAAGAC	1 cut(s)	548
BstX2I	RGATCY	2 cut(s)	181, 206
BstYI	RGATCY	2 cut(s)	181, 206
BsuRI	GGCC	2 cut(s)	201, 461
BtgI	CCRYGG	2 cut(s)	202, 636
BtsCI	GGATG	5 cut(s)	515, 632, 927, 938, 952
Cac8I	GCNNGC	2 cut(s)	247, 388
Cfr10I	RCCGGY	2 cut(s)	35, 515
CseI	GACGC	1 cut(s)	696
Csp6I	GTAC	4 cut(s)	23, 261, 421, 732
CviAII	CATG	2 cut(s)	334, 955
CviQI	GTAC	4 cut(s)	23, 261, 421, 732
DdeI	CTNAG	2 cut(s)	367, 942
DpnI	GATC	3 cut(s)	183, 208, 563
DpnII	GATC	3 cut(s)	181, 206, 561
DrdI	GACNNNNNNGTC	1 cut(s)	706
DriI	GACNNNNNGTC	1 cut(s)	534
DseDI	GACNNNNNNGTC	1 cut(s)	706
EaeI	YGGCCR	1 cut(s)	459
Eam1104I	CTCTTC	2 cut(s)	66, 260
Eam1105I	GACNNNNNGTC	1 cut(s)	534
EarI	CTCTTC	2 cut(s)	66, 260
EciI	GGCGGA	3 cut(s)	74, 127, 489
Ecl136II	GAGCTC	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	462
Eco24I	GRGCYC	1 cut(s)	159
Eco53kI	GAGCTC	1 cut(s)	157
EcoICRI	GAGCTC	1 cut(s)	157
EcoT14I	CCWWGG	1 cut(s)	462
EcoT38I	GRGCYC	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	462
Esp3I	CGTCTC	3 cut(s)	170, 262, 332
FaeI	CATG	2 cut(s)	337, 958
FaiI	YATR	9 cut(s)	113, 254, 314, 335, 705, 755, 791, 798, 956
FaqI	GGGAC	2 cut(s)	643, 712
FatI	CATG	2 cut(s)	333, 954
FauI	CCCGC	1 cut(s)	395
Fnu4HI	GCNGC	4 cut(s)	522, 525, 624, 683
FokI	GGATG	5 cut(s)	522, 619, 934, 945, 959
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	4 cut(s)	522, 525, 624, 683
FspBI	CTAG	2 cut(s)	246, 767
GluI	GCNGC	4 cut(s)	522, 525, 624, 683
HaeIII	GGCC	2 cut(s)	201, 461
HapII	CCGG	8 cut(s)	36, 56, 493, 516, 578, 627, 696, 735
HgaI	GACGC	1 cut(s)	696
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	2 cut(s)	337, 958
HincII	GTYRAC	1 cut(s)	604
HindII	GTYRAC	1 cut(s)	604
HinfI	GANTC	4 cut(s)	496, 677, 867, 951
HpaII	CCGG	8 cut(s)	36, 56, 493, 516, 578, 627, 696, 735
HphI	GGTGA	1 cut(s)	686
Hpy166II	GTNNAC	4 cut(s)	25, 412, 604, 732
Hpy188I	TCNGA	2 cut(s)	561, 712
Hpy188III	TCNNGA	2 cut(s)	773, 880
Hpy8I	GTNNAC	4 cut(s)	25, 412, 604, 732
Hpy99I	CGWCG	2 cut(s)	152, 712
HpyAV	CCTTC	3 cut(s)	660, 734, 848
HpyCH4III	ACNGT	7 cut(s)	29, 232, 260, 301, 536, 554, 586
HpyCH4IV	ACGT	4 cut(s)	147, 441, 701, 831
HpyCH4V	TGCA	3 cut(s)	374, 521, 938
HpyF10VI	GCNNNNNNNGC	3 cut(s)	467, 521, 767
HpyF3I	CTNAG	2 cut(s)	367, 942
HpySE526I	ACGT	4 cut(s)	147, 441, 701, 831
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	2 cut(s)	337, 958
Kzo9I	GATC	3 cut(s)	181, 206, 561
LmnI	GCTCC	1 cut(s)	692
Lsp1109I	GCAGC	2 cut(s)	511, 533
LweI	GCATC	2 cut(s)	263, 850
MaeI	CTAG	2 cut(s)	246, 767
MaeII	ACGT	4 cut(s)	147, 441, 701, 831
MaeIII	GTNAC	2 cut(s)	427, 674
MalI	GATC	3 cut(s)	183, 208, 563
MboI	GATC	3 cut(s)	181, 206, 561
MboII	GAAGA	4 cut(s)	44, 83, 277, 548
MflI	RGATCY	2 cut(s)	181, 206
MhlI	GDGCHC	1 cut(s)	159
MlsI	TGGCCA	1 cut(s)	461
MluCI	AATT	3 cut(s)	170, 193, 405
MluNI	TGGCCA	1 cut(s)	461
MlyI	GAGTC	2 cut(s)	671, 861
MmeI	TCCRAC	1 cut(s)	690
MnlI	CCTC	8 cut(s)	67, 116, 195, 370, 821, 886, 937, 952
Mox20I	TGGCCA	1 cut(s)	461
MscI	TGGCCA	1 cut(s)	461
MseI	TTAA	5 cut(s)	89, 192, 647, 807, 909
MslI	CAYNNNNRTG	1 cut(s)	30
Msp20I	TGGCCA	1 cut(s)	461
MspA1I	CMGCKG	3 cut(s)	524, 685, 785
MspI	CCGG	8 cut(s)	36, 56, 493, 516, 578, 627, 696, 735
MspR9I	CCNGG	2 cut(s)	628, 697
Mva1269I	GAATGC	1 cut(s)	453
MwoI	GCNNNNNNNGC	3 cut(s)	467, 521, 767
NciI	CCSGG	2 cut(s)	628, 697
NdeII	GATC	3 cut(s)	181, 206, 561
NheI	GCTAGC	1 cut(s)	245
NlaIII	CATG	2 cut(s)	337, 958
NlaIV	GGNNCC	4 cut(s)	34, 183, 280, 694
NmeAIII	GCCGAG	1 cut(s)	87
NmuCI	GTSAC	2 cut(s)	427, 674
OliI	CACNNNNGTG	1 cut(s)	30
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PctI	GAATGC	1 cut(s)	453
PfeI	GAWTC	2 cut(s)	496, 951
PkrI	GCNGC	4 cut(s)	523, 526, 625, 684
PleI	GAGTC	2 cut(s)	671, 861
PpsI	GAGTC	2 cut(s)	671, 861
PsiI	TTATAA	1 cut(s)	755
Psp124BI	GAGCTC	1 cut(s)	159
PspN4I	GGNNCC	4 cut(s)	34, 183, 280, 694
PsuI	RGATCY	2 cut(s)	181, 206
PvuII	CAGCTG	2 cut(s)	524, 785
RsaI	GTAC	4 cut(s)	24, 262, 422, 733
RsaNI	GTAC	4 cut(s)	23, 261, 421, 732
RseI	CAYNNNNRTG	1 cut(s)	30
SacI	GAGCTC	1 cut(s)	159
SaqAI	TTAA	5 cut(s)	89, 192, 647, 807, 909
SatI	GCNGC	4 cut(s)	522, 525, 624, 683
Sau3AI	GATC	3 cut(s)	181, 206, 561
ScaI	AGTACT	1 cut(s)	422
SchI	GAGTC	2 cut(s)	671, 861
ScrFI	CCNGG	2 cut(s)	628, 697
SduI	GDGCHC	1 cut(s)	159
SfaNI	GCATC	2 cut(s)	263, 850
SmiMI	CAYNNNNRTG	1 cut(s)	30
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
Sse9I	AATT	3 cut(s)	170, 193, 405
SsiI	CCGC	8 cut(s)	59, 138, 276, 388, 500, 624, 683, 821
SspMI	CTAG	2 cut(s)	246, 767
SstI	GAGCTC	1 cut(s)	159
StyD4I	CCNGG	2 cut(s)	626, 695
StyI	CCWWGG	1 cut(s)	462
TaaI	ACNGT	7 cut(s)	29, 232, 260, 301, 536, 554, 586
TaiI	ACGT	4 cut(s)	150, 444, 704, 834
TaqI	TCGA	3 cut(s)	42, 844, 881
TaqII	GACCGA	1 cut(s)	545
TasI	AATT	3 cut(s)	170, 193, 405
TatI	WGTACW	2 cut(s)	22, 420
TauI	GCSGC	2 cut(s)	626, 685
TfiI	GAWTC	2 cut(s)	496, 951
Tru1I	TTAA	5 cut(s)	89, 192, 647, 807, 909
Tru9I	TTAA	5 cut(s)	89, 192, 647, 807, 909
TseFI	GTSAC	2 cut(s)	427, 674
TseI	GCWGC	2 cut(s)	521, 524
Tsp45I	GTSAC	2 cut(s)	427, 674
TspDTI	ATGAA	3 cut(s)	563, 665, 943
TspGWI	ACGGA	3 cut(s)	194, 233, 446
XspI	CTAG	2 cut(s)	246, 767
ZraI	GACGTC	1 cut(s)	148
ZrmI	AGTACT	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.