Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0008520

Physical Location & Seq

Genomic Coordinates Reverse (-)

65416854 .. 65419079

Gene Structure 2226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G041790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGGCGGTTGGGCTATTGCTGTGCACGGTGGCGCTGGTGTCGACCCAAATCTCCCTCTCGAGTGCCAAGAACAAGCCAAACAGCTCCTCACTCGCTGCCTCAATCTCGGAATCTCTGCTCTCCGTTCTGATCTTCCCGCCATTGATGTTGTTGAACTTGTTGTTAGGGAATTGGAAACGGATCCGTTTTTCAATTCCGGCCGTGGATCCGCCCTGAATGAAAATGGCAGGGTTGAGATGGAAGCCAGCATCATGGATGGACCCAAAAGACGATGCGGCGCCGTATCGGGGTTGAGCACAGTCAAGAACCCGATCTCGCTTGCCCGACTCGTCATGGATAAGTCCCCGCATTCCTACCTTGCCTTCTCCGGCGCCGAAAGCTTCGCCAGGCAACAGGGCGTTGAGCTGGTGGACAATGACTATTTTATCACGGAGGAGAATGTGGGGATGCTCAAGTTGGCCAAGGAAGCCAACACCATCTTGTTTGATTACAGAATCCCACTTGGAACGGAGACTTGCGCTGCTGGTGTGGAGAGCCCGATACAAATGAACGGGCTGCCCATAAGCGTGTACGCACCCGAGACGGTCGGATGTGTGGTCGTGGACTGCCAGGGCCGCTGCGCAGCTGCCACCTCTACCGGTGGACTCATGAACAAAATGACAGGTCGCATTGGGGACTCGCCACTCATTGGGGCTGGTACCTACGCGTGTGACCTCTGTGGTGTCTCTTGCACAGGAGAGGGAGAGGCCATCATACGCGGGACACTGGCGCGTGAAGTTGCTGCTGTGATGGAGTACAAGGGCTTAGGCCTTCAGGACGCTGTGGACTTTGTGATCAAGAACAGGCTCGATGAAGGAAAGGCCGGACTCATTGCTGTGTCCAACAAAGGAGAAGTGGCTTGTGGGTTTAACTGCTGCGGAATGTTCAGGGGGAGTGCAACAGAGGATGGGTTCATGGAGGTTGGGATTTGGGATCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004067 GO:0004175 GO:0004190 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0016810 GO:0016811 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asparaginase_2

Protein Analysis

326

Amino Acids

34.39

Weight (kDa)

4.68

Isoelectric Point (pI)

33.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asparaginase_2	PF01112	4 - 323	1e-98	Asparaginase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16150
fragaria_vesca	FvH4_2g33770
malus_domestica	MD08G1092600.v1.1 MD15G1077000.v1.1
prunus_persica	Prupe.1G430400_v2.0.a1 Prupe.1G430400_v2.0.a1 Prupe.1G430400_v2.0.a1
pyrus_communis	pycom08g07530 pycom15g07170
rosa_chinensis	RchiOBHm_Chr4g0445551 RchiOBHm_Chr6g0308781
rosa_laevigata	RLG00000010619
rosa_multiflora	Rmu_sc0000871.1_g000036 Rmu_sc0009346.1_g000001 Rmu_sc0027152.1_g000001 Rmu_sc0027153.1_g000001 Rmu_sc0027154.1_g000001
rosa_roxburghii	Rroxscaffold_7G00159940
rosa_rugosa	Rorug06G0368100
rosa_samantha	Rh4DG432200 Rh6CG494400 Rh6DG479700
rosa_wichuraiana	Rw6G041790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	622
Acc65I	GGTACC	1 cut(s)	698
AccB1I	GGYRCC	3 cut(s)	278, 371, 698
AccB7I	CCANNNNNTGG	1 cut(s)	689
AccI	GTMKAC	1 cut(s)	42
AccII	CGCG	3 cut(s)	707, 759, 772
AciI	CCGC	8 cut(s)	6, 138, 210, 276, 347, 616, 759, 918
AclWI	GGATC	4 cut(s)	176, 189, 201, 214
AcoI	YGGCCR	2 cut(s)	199, 459
AcuI	CTGAAG	1 cut(s)	797
AcyI	GRCGYC	2 cut(s)	279, 372
AfaI	GTAC	3 cut(s)	572, 700, 797
AfiI	CCNNNNNNNGG	2 cut(s)	288, 689
AflIII	ACRYGT	1 cut(s)	705
AgeI	ACCGGT	1 cut(s)	638
AgsI	TTSAA	2 cut(s)	155, 193
AjnI	CCWGG	2 cut(s)	386, 609
AluBI	AGCT	4 cut(s)	85, 381, 406, 626
AluI	AGCT	4 cut(s)	85, 381, 406, 626
Alw21I	GWGCWC	2 cut(s)	27, 299
Alw26I	GTCTC	3 cut(s)	506, 575, 730
Alw44I	GTGCAC	1 cut(s)	23
AlwI	GGATC	4 cut(s)	176, 189, 201, 214
Ama87I	CYCGRG	2 cut(s)	59, 578
AoxI	GGCC	6 cut(s)	199, 459, 613, 747, 808, 861
ApaLI	GTGCAC	1 cut(s)	23
ApeKI	GCWGC	8 cut(s)	96, 521, 556, 618, 623, 626, 782, 915
AsiGI	ACCGGT	1 cut(s)	638
Asp718I	GGTACC	1 cut(s)	698
AspLEI	GCGC	6 cut(s)	35, 281, 374, 521, 623, 772
AspS9I	GGNCC	2 cut(s)	260, 613
AvaI	CYCGRG	2 cut(s)	59, 578
AvaII	GGWCC	1 cut(s)	260
BaeGI	GKGCMC	1 cut(s)	27
BalI	TGGCCA	1 cut(s)	461
BamHI	GGATCC	2 cut(s)	181, 206
BanI	GGYRCC	3 cut(s)	278, 371, 698
BanII	GRGCYC	1 cut(s)	539
Bbv12I	GWGCWC	2 cut(s)	27, 299
BbvI	GCAGC	8 cut(s)	83, 508, 543, 605, 613, 635, 769, 902
BccI	CCATC	6 cut(s)	232, 251, 485, 758, 784, 941
BceAI	ACGGC	2 cut(s)	186, 266
BciT130I	CCWGG	2 cut(s)	388, 611
BclI	TGATCA	1 cut(s)	834
BcoDI	GTCTC	3 cut(s)	506, 575, 730
BfoI	RGCGCY	3 cut(s)	36, 282, 375
Bme1390I	CCNGG	2 cut(s)	388, 611
Bme18I	GGWCC	1 cut(s)	260
BmeT110I	CYCGRG	2 cut(s)	59, 578
BmgT120I	GGNCC	2 cut(s)	260, 613
BmiI	GGNNCC	6 cut(s)	183, 208, 262, 280, 373, 700
BmrFI	CCNGG	2 cut(s)	388, 611
BmsI	GCATC	3 cut(s)	258, 263, 438
Bpu10I	CCTNAGC	1 cut(s)	805
BpuEI	CTTGAG	1 cut(s)	437
BsaHI	GRCGYC	2 cut(s)	279, 372
BsaJI	CCNNGG	3 cut(s)	202, 462, 610
BsaWI	WCCGGW	1 cut(s)	638
Bsc4I	CCNNNNNNNGG	2 cut(s)	288, 689
Bse118I	RCCGGY	1 cut(s)	638
Bse1I	ACTGG	1 cut(s)	771
Bse3DI	GCAATG	1 cut(s)	870
BseBI	CCWGG	2 cut(s)	388, 611
BseDI	CCNNGG	3 cut(s)	202, 462, 610
BseGI	GGATG	4 cut(s)	262, 453, 596, 952
BseLI	CCNNNNNNNGG	2 cut(s)	288, 689
BseMI	GCAATG	1 cut(s)	870
BseNI	ACTGG	1 cut(s)	771
BseRI	GAGGAG	2 cut(s)	77, 449
BseSI	GKGCMC	1 cut(s)	27
BseX3I	CGGCCG	1 cut(s)	199
BseXI	GCAGC	8 cut(s)	83, 508, 543, 605, 613, 635, 769, 902
Bsh1236I	CGCG	3 cut(s)	707, 759, 772
Bsh1285I	CGRYCG	2 cut(s)	202, 588
BshFI	GGCC	6 cut(s)	201, 461, 615, 749, 810, 863
BshNI	GGYRCC	3 cut(s)	278, 371, 698
BshTI	ACCGGT	1 cut(s)	638
BsiEI	CGRYCG	2 cut(s)	202, 588
BsiHKAI	GWGCWC	2 cut(s)	27, 299
BsiHKCI	CYCGRG	2 cut(s)	59, 578
BsiSI	CCGG	4 cut(s)	198, 369, 639, 864
BslFI	GGGAC	3 cut(s)	328, 689, 775
BslI	CCNNNNNNNGG	2 cut(s)	288, 689
BsmAI	GTCTC	3 cut(s)	506, 575, 730
BsmBI	CGTCTC	1 cut(s)	575
BsmFI	GGGAC	3 cut(s)	328, 689, 775
BsmI	GAATGC	1 cut(s)	349
BsnI	GGCC	6 cut(s)	201, 461, 615, 749, 810, 863
BsoBI	CYCGRG	2 cut(s)	59, 578
Bsp1286I	GDGCHC	3 cut(s)	27, 299, 539
Bsp143I	GATC	6 cut(s)	130, 181, 206, 312, 834, 973
BspACI	CCGC	8 cut(s)	6, 138, 210, 276, 347, 616, 759, 918
BspANI	GGCC	6 cut(s)	201, 461, 615, 749, 810, 863
BspFNI	CGCG	3 cut(s)	707, 759, 772
BspHI	TCATGA	1 cut(s)	648
BspLI	GGNNCC	6 cut(s)	183, 208, 262, 280, 373, 700
BspPI	GGATC	4 cut(s)	176, 189, 201, 214
BspT107I	GGYRCC	3 cut(s)	278, 371, 698
BsrDI	GCAATG	1 cut(s)	870
BsrFI	RCCGGY	1 cut(s)	638
BsrI	ACTGG	1 cut(s)	771
BssAI	RCCGGY	1 cut(s)	638
BssECI	CCNNGG	3 cut(s)	202, 462, 610
BssMI	GATC	6 cut(s)	130, 181, 206, 312, 834, 973
BssNI	GRCGYC	2 cut(s)	279, 372
BssT1I	CCWWGG	1 cut(s)	462
Bst2UI	CCWGG	2 cut(s)	388, 611
Bst4CI	ACNGT	3 cut(s)	29, 301, 586
BstACI	GRCGYC	2 cut(s)	279, 372
BstC8I	GCNNGC	2 cut(s)	247, 321
BstDEI	CTNAG	1 cut(s)	805
BstDSI	CCRYGG	1 cut(s)	202
BstF5I	GGATG	4 cut(s)	262, 453, 596, 952
BstFNI	CGCG	3 cut(s)	707, 759, 772
BstH2I	RGCGCY	3 cut(s)	36, 282, 375
BstHHI	GCGC	6 cut(s)	35, 281, 374, 521, 623, 772
BstKTI	GATC	6 cut(s)	133, 184, 209, 315, 837, 976
BstMAI	GTCTC	3 cut(s)	506, 575, 730
BstMBI	GATC	6 cut(s)	130, 181, 206, 312, 834, 973
BstMCI	CGRYCG	2 cut(s)	202, 588
BstMWI	GCNNNNNNNGC	3 cut(s)	378, 467, 615
BstNI	CCWGG	2 cut(s)	388, 611
BstSCI	CCNGG	2 cut(s)	386, 609
BstSLI	GKGCMC	1 cut(s)	27
BstUI	CGCG	3 cut(s)	707, 759, 772
BstV1I	GCAGC	8 cut(s)	83, 508, 543, 605, 613, 635, 769, 902
BstX2I	RGATCY	2 cut(s)	181, 206
BstXI	CCANNNNNNTGG	1 cut(s)	253
BstYI	RGATCY	2 cut(s)	181, 206
BstZI	CGGCCG	1 cut(s)	199
BsuRI	GGCC	6 cut(s)	201, 461, 615, 749, 810, 863
BtgI	CCRYGG	1 cut(s)	202
BtsCI	GGATG	4 cut(s)	262, 453, 596, 952
BtsIMutI	CAGTG	1 cut(s)	764
Cac8I	GCNNGC	2 cut(s)	247, 321
CciI	TCATGA	1 cut(s)	648
CfoI	GCGC	6 cut(s)	35, 281, 374, 521, 623, 772
Cfr10I	RCCGGY	1 cut(s)	638
Cfr13I	GGNCC	2 cut(s)	260, 613
CseI	GACGC	1 cut(s)	827
Csp6I	GTAC	3 cut(s)	571, 699, 796
CspAI	ACCGGT	1 cut(s)	638
CviAII	CATG	4 cut(s)	253, 334, 649, 955
CviQI	GTAC	3 cut(s)	571, 699, 796
DdeI	CTNAG	1 cut(s)	805
DinI	GGCGCC	2 cut(s)	280, 373
DpnI	GATC	6 cut(s)	132, 183, 208, 314, 836, 975
DpnII	GATC	6 cut(s)	130, 181, 206, 312, 834, 973
EaeI	YGGCCR	2 cut(s)	199, 459
EagI	CGGCCG	1 cut(s)	199
EciI	GGCGGA	1 cut(s)	199
EclXI	CGGCCG	1 cut(s)	199
Eco130I	CCWWGG	1 cut(s)	462
Eco147I	AGGCCT	1 cut(s)	810
Eco24I	GRGCYC	1 cut(s)	539
Eco47I	GGWCC	1 cut(s)	260
Eco52I	CGGCCG	1 cut(s)	199
Eco57I	CTGAAG	1 cut(s)	797
Eco88I	CYCGRG	2 cut(s)	59, 578
EcoRII	CCWGG	2 cut(s)	386, 609
EcoT14I	CCWWGG	1 cut(s)	462
EcoT38I	GRGCYC	1 cut(s)	539
EgeI	GGCGCC	2 cut(s)	280, 373
EheI	GGCGCC	2 cut(s)	280, 373
ErhI	CCWWGG	1 cut(s)	462
Esp3I	CGTCTC	1 cut(s)	575
FaeI	CATG	4 cut(s)	256, 337, 652, 958
FaiI	YATR	6 cut(s)	254, 335, 563, 650, 755, 956
FaqI	GGGAC	3 cut(s)	328, 689, 775
FatI	CATG	4 cut(s)	252, 333, 648, 954
FauI	CCCGC	3 cut(s)	145, 354, 752
FbaI	TGATCA	1 cut(s)	834
FblI	GTMKAC	1 cut(s)	42
FokI	GGATG	4 cut(s)	269, 460, 603, 959
FriOI	GRGCYC	1 cut(s)	539
FspI	TGCGCA	1 cut(s)	622
GlaI	GCGC	6 cut(s)	34, 280, 373, 520, 622, 771
HaeII	RGCGCY	3 cut(s)	36, 282, 375
HaeIII	GGCC	6 cut(s)	201, 461, 615, 749, 810, 863
HapII	CCGG	4 cut(s)	198, 369, 639, 864
HgaI	GACGC	1 cut(s)	827
HhaI	GCGC	6 cut(s)	35, 281, 374, 521, 623, 772
Hin1I	GRCGYC	2 cut(s)	279, 372
Hin1II	CATG	4 cut(s)	256, 337, 652, 958
Hin6I	GCGC	6 cut(s)	33, 279, 372, 519, 621, 770
HinP1I	GCGC	6 cut(s)	33, 279, 372, 519, 621, 770
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HindIII	AAGCTT	1 cut(s)	379
HinfI	GANTC	6 cut(s)	111, 327, 495, 645, 677, 867
HpaII	CCGG	4 cut(s)	198, 369, 639, 864
Hpy166II	GTNNAC	7 cut(s)	25, 43, 412, 571, 604, 644, 826
Hpy188I	TCNGA	3 cut(s)	110, 130, 590
Hpy188III	TCNNGA	5 cut(s)	59, 304, 649, 815, 838
Hpy8I	GTNNAC	7 cut(s)	25, 43, 412, 571, 604, 644, 826
HpyAV	CCTTC	3 cut(s)	373, 821, 848
HpyCH4III	ACNGT	3 cut(s)	29, 301, 586
HpyCH4V	TGCA	3 cut(s)	25, 732, 938
HpyF10VI	GCNNNNNNNGC	3 cut(s)	378, 467, 615
HpyF3I	CTNAG	1 cut(s)	805
Hsp92I	GRCGYC	2 cut(s)	279, 372
Hsp92II	CATG	4 cut(s)	256, 337, 652, 958
HspAI	GCGC	6 cut(s)	33, 279, 372, 519, 621, 770
KasI	GGCGCC	2 cut(s)	278, 371
KpnI	GGTACC	1 cut(s)	702
Ksp22I	TGATCA	1 cut(s)	834
Kzo9I	GATC	6 cut(s)	130, 181, 206, 312, 834, 973
LmnI	GCTCC	1 cut(s)	90
Lsp1109I	GCAGC	8 cut(s)	83, 508, 543, 605, 613, 635, 769, 902
LweI	GCATC	3 cut(s)	258, 263, 438
MaeIII	GTNAC	1 cut(s)	710
MalI	GATC	6 cut(s)	132, 183, 208, 314, 836, 975
MboI	GATC	6 cut(s)	130, 181, 206, 312, 834, 973
MboII	GAAGA	1 cut(s)	125
MflI	RGATCY	2 cut(s)	181, 206
MhlI	GDGCHC	3 cut(s)	27, 299, 539
MlsI	TGGCCA	1 cut(s)	461
MluCI	AATT	2 cut(s)	170, 193
MluI	ACGCGT	1 cut(s)	705
MluNI	TGGCCA	1 cut(s)	461
Mly113I	GGCGCC	2 cut(s)	279, 372
MlyI	GAGTC	4 cut(s)	321, 639, 671, 861
MmeI	TCCRAC	2 cut(s)	568, 906
Mox20I	TGGCCA	1 cut(s)	461
MscI	TGGCCA	1 cut(s)	461
MseI	TTAA	1 cut(s)	909
MslI	CAYNNNNRTG	2 cut(s)	566, 875
Msp20I	TGGCCA	1 cut(s)	461
MspA1I	CMGCKG	2 cut(s)	618, 626
MspI	CCGG	4 cut(s)	198, 369, 639, 864
MspR9I	CCNGG	2 cut(s)	388, 611
Mva1269I	GAATGC	1 cut(s)	349
MvaI	CCWGG	2 cut(s)	388, 611
MvnI	CGCG	3 cut(s)	707, 759, 772
MwoI	GCNNNNNNNGC	3 cut(s)	378, 467, 615
NarI	GGCGCC	2 cut(s)	279, 372
NdeII	GATC	6 cut(s)	130, 181, 206, 312, 834, 973
NlaIII	CATG	4 cut(s)	256, 337, 652, 958
NlaIV	GGNNCC	6 cut(s)	183, 208, 262, 280, 373, 700
NmuCI	GTSAC	1 cut(s)	710
NsbI	TGCGCA	1 cut(s)	622
PaeR7I	CTCGAG	1 cut(s)	59
PagI	TCATGA	1 cut(s)	648
PceI	AGGCCT	1 cut(s)	810
PctI	GAATGC	1 cut(s)	349
PfeI	GAWTC	2 cut(s)	111, 495
PflMI	CCANNNNNTGG	1 cut(s)	689
PinAI	ACCGGT	1 cut(s)	638
PleI	GAGTC	4 cut(s)	321, 639, 671, 861
PluTI	GGCGCC	2 cut(s)	282, 375
PpsI	GAGTC	4 cut(s)	321, 639, 671, 861
Psp6I	CCWGG	2 cut(s)	386, 609
PspGI	CCWGG	2 cut(s)	386, 609
PspN4I	GGNNCC	6 cut(s)	183, 208, 262, 280, 373, 700
PspPI	GGNCC	2 cut(s)	260, 613
PsuI	RGATCY	2 cut(s)	181, 206
PvuII	CAGCTG	1 cut(s)	626
RsaI	GTAC	3 cut(s)	572, 700, 797
RsaNI	GTAC	3 cut(s)	571, 699, 796
RseI	CAYNNNNRTG	2 cut(s)	566, 875
SalI	GTCGAC	1 cut(s)	41
SaqAI	TTAA	1 cut(s)	909
Sau3AI	GATC	6 cut(s)	130, 181, 206, 312, 834, 973
Sau96I	GGNCC	2 cut(s)	260, 613
SchI	GAGTC	4 cut(s)	321, 639, 671, 861
ScrFI	CCNGG	2 cut(s)	388, 611
SduI	GDGCHC	3 cut(s)	27, 299, 539
SfaNI	GCATC	3 cut(s)	258, 263, 438
SfoI	GGCGCC	2 cut(s)	280, 373
Sfr274I	CTCGAG	1 cut(s)	59
SinI	GGWCC	1 cut(s)	260
SlaI	CTCGAG	1 cut(s)	59
SmiMI	CAYNNNNRTG	2 cut(s)	566, 875
SmlI	CTYRAG	2 cut(s)	59, 452
SmoI	CTYRAG	2 cut(s)	59, 452
Sse9I	AATT	2 cut(s)	170, 193
SseBI	AGGCCT	1 cut(s)	810
SsiI	CCGC	8 cut(s)	6, 138, 210, 276, 347, 616, 759, 918
SspDI	GGCGCC	2 cut(s)	278, 371
StuI	AGGCCT	1 cut(s)	810
StyD4I	CCNGG	2 cut(s)	386, 609
StyI	CCWWGG	1 cut(s)	462
TaaI	ACNGT	3 cut(s)	29, 301, 586
TaqI	TCGA	3 cut(s)	42, 60, 849
TasI	AATT	2 cut(s)	170, 193
TatI	WGTACW	1 cut(s)	795
TauI	GCSGC	2 cut(s)	279, 618
TfiI	GAWTC	2 cut(s)	111, 495
Tru1I	TTAA	1 cut(s)	909
Tru9I	TTAA	1 cut(s)	909
TscAI	CASTG	1 cut(s)	771
TseFI	GTSAC	1 cut(s)	710
TseI	GCWGC	8 cut(s)	96, 521, 556, 618, 623, 626, 782, 915
Tsp45I	GTSAC	1 cut(s)	710
TspDTI	ATGAA	5 cut(s)	234, 563, 665, 867, 943
TspGWI	ACGGA	5 cut(s)	113, 174, 194, 446, 524
TspRI	CASTG	1 cut(s)	771
Van91I	CCANNNNNTGG	1 cut(s)	689
VneI	GTGCAC	1 cut(s)	23
VpaK11BI	GGWCC	1 cut(s)	260
XhoI	CTCGAG	1 cut(s)	59
XmiI	GTMKAC	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.