AT3G17152

Plant invertase/pectin methylesterase inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0017878
Physical Location & Seq
Forward (+)
5848787 .. 5849660
874 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G17152.1

Sequence Viewer

Length: 528 bp
ATGAATATTTACATATACTTATTCGCTATTTTTGTCGTGCTTAGCCAAATCCAAATAGCCTTGTCACAAACAATTCAGTCTCCTCCGGGATCTAGCCTTGTACAACGACTCTGCAAAAGAAACCGTTACCAAGCCCTATGCATCTCTACTCTCAATGTTGATCCTAGAAGCAAAACCTCAAATCTACAAGGGCTTGCGTCGATCTCTCTCGATGCTACGACAAAGAAATTCAACGTGACGTTAACATATTATATCTCTGTCCTAAAGAATGTCAGAGGCCGCGTAGACTTTGAGAGATACGGAACTTGCATCGAGGAGTATGGTGCGGCGGTTGATAGGTTTTTACCGGCGGTGAAGGCTGATCTAAAGGCGAAGAAATATCCTGAGGCTATGTCTGAAATGAAAGACGTTGTGGCGAAGCCAGGTTATTGTGAGGACCAGTTCGCCGGGGAATCTCCGGTGACGGCACGTAACAAAGCCGTCCATGATATCGCCGATATGACTGCTGACATCATCAAAACGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMEI

Protein Analysis

175

Amino Acids

19.48

Weight (kDa)

9.0

Isoelectric Point (pI)

36.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMEI PF04043 32 - 163 1.9e-17 Plant invertase/pectin methylesterase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017878)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17150 AT3G17152
fragaria_vesca FvH4_4g25210
rosa_chinensis RchiOBHm_Chr4g0432401
rosa_multiflora Rmu_co8060982.1_g000001 Rmu_sc0001084.1_g000025 Rmu_sc0016445.1_g000009
rosa_rugosa Rorug04G0258200
rosa_samantha Rh4BG321700 Rh4CG336800 Rh4DG317300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 285
AccII CGCG 1 cut(s) 282
AciI CCGC 4 cut(s) 280, 326, 329, 350
AclI AACGTT 1 cut(s) 521
AclWI GGATC 2 cut(s) 97, 155
AcsI RAATTY 1 cut(s) 227
AfaI GTAC 1 cut(s) 102
AgsI TTSAA 1 cut(s) 232
AjnI CCWGG 1 cut(s) 421
Alw26I GTCTC 1 cut(s) 84
AlwI GGATC 2 cut(s) 97, 155
AoxI GGCC 1 cut(s) 277
ApoI RAATTY 1 cut(s) 227
AspS9I GGNCC 1 cut(s) 436
AsuC2I CCSGG 2 cut(s) 87, 448
AsuHPI GGTGA 2 cut(s) 364, 472
AvaII GGWCC 1 cut(s) 436
AxyI CCTNAGG 1 cut(s) 384
BceAI ACGGC 2 cut(s) 464, 480
BcgI CGANNNNNNTGC 2 cut(s) 485, 519
BciT130I CCWGG 1 cut(s) 423
BcnI CCSGG 2 cut(s) 87, 448
BcoDI GTCTC 1 cut(s) 84
BfaI CTAG 2 cut(s) 93, 165
BisI GCNGC 2 cut(s) 280, 327
BlpI GCTNAGC 1 cut(s) 41
BlsI GCNGC 2 cut(s) 281, 328
Bme1390I CCNGG 3 cut(s) 87, 423, 448
Bme18I GGWCC 1 cut(s) 436
BmgT120I GGNCC 1 cut(s) 436
BmrFI CCNGG 3 cut(s) 87, 423, 448
BmsI GCATC 3 cut(s) 150, 202, 318
Bpu1102I GCTNAGC 1 cut(s) 41
BpuMI CCSGG 2 cut(s) 87, 448
BsaAI YACGTR 1 cut(s) 470
BsaJI CCNNGG 1 cut(s) 447
BsaWI WCCGGW 1 cut(s) 457
Bse118I RCCGGY 1 cut(s) 346
Bse1I ACTGG 1 cut(s) 439
Bse21I CCTNAGG 1 cut(s) 384
BseBI CCWGG 1 cut(s) 423
BseDI CCNNGG 1 cut(s) 447
BseMII CTCAG 1 cut(s) 375
BseNI ACTGG 1 cut(s) 439
BseRI GAGGAG 2 cut(s) 72, 329
Bsh1236I CGCG 1 cut(s) 282
BshFI GGCC 1 cut(s) 279
BsiSI CCGG 4 cut(s) 86, 347, 447, 458
BsmAI GTCTC 1 cut(s) 84
BsnI GGCC 1 cut(s) 279
Bsp1407I TGTACA 1 cut(s) 100
Bsp143I GATC 4 cut(s) 89, 160, 201, 361
Bsp1720I GCTNAGC 1 cut(s) 41
BspACI CCGC 4 cut(s) 280, 326, 329, 350
BspANI GGCC 1 cut(s) 279
BspCNI CTCAG 1 cut(s) 376
BspFNI CGCG 1 cut(s) 282
BspPI GGATC 2 cut(s) 97, 155
BsrFI RCCGGY 1 cut(s) 346
BsrGI TGTACA 1 cut(s) 100
BsrI ACTGG 1 cut(s) 439
BssAI RCCGGY 1 cut(s) 346
BssECI CCNNGG 1 cut(s) 447
BssMI GATC 4 cut(s) 89, 160, 201, 361
Bst2UI CCWGG 1 cut(s) 423
Bst4CI ACNGT 1 cut(s) 125
BstAUI TGTACA 1 cut(s) 100
BstBAI YACGTR 1 cut(s) 470
BstC8I GCNNGC 1 cut(s) 195
BstDEI CTNAG 2 cut(s) 41, 384
BstFNI CGCG 1 cut(s) 282
BstKTI GATC 4 cut(s) 92, 163, 204, 364
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 4 cut(s) 89, 160, 201, 361
BstMWI GCNNNNNNNGC 1 cut(s) 356
BstNI CCWGG 1 cut(s) 423
BstSCI CCNGG 3 cut(s) 85, 421, 446
BstUI CGCG 1 cut(s) 282
BstX2I RGATCY 1 cut(s) 89
BstYI RGATCY 1 cut(s) 89
Bsu36I CCTNAGG 1 cut(s) 384
BsuRI GGCC 1 cut(s) 279
Cac8I GCNNGC 1 cut(s) 195
Cfr10I RCCGGY 1 cut(s) 346
Cfr13I GGNCC 1 cut(s) 436
CseI GACGC 1 cut(s) 186
Csp6I GTAC 1 cut(s) 101
CviAII CATG 1 cut(s) 485
CviQI GTAC 1 cut(s) 101
DdeI CTNAG 2 cut(s) 41, 384
DpnI GATC 4 cut(s) 91, 162, 203, 363
DpnII GATC 4 cut(s) 89, 160, 201, 361
Eco32I GATATC 1 cut(s) 490
Eco47I GGWCC 1 cut(s) 436
Eco81I CCTNAGG 1 cut(s) 384
EcoRII CCWGG 1 cut(s) 421
EcoRV GATATC 1 cut(s) 490
EcoT22I ATGCAT 1 cut(s) 143
FaeI CATG 1 cut(s) 488
FaiI YATR 9 cut(s) 14, 16, 139, 247, 252, 321, 392, 486, 500
FatI CATG 1 cut(s) 484
FblI GTMKAC 1 cut(s) 285
Fnu4HI GCNGC 2 cut(s) 280, 327
Fsp4HI GCNGC 2 cut(s) 280, 327
FspBI CTAG 2 cut(s) 93, 165
GluI GCNGC 2 cut(s) 280, 327
HaeIII GGCC 1 cut(s) 279
HapII CCGG 4 cut(s) 86, 347, 447, 458
HgaI GACGC 1 cut(s) 186
Hin1II CATG 1 cut(s) 488
HincII GTYRAC 1 cut(s) 243
HindII GTYRAC 1 cut(s) 243
HinfI GANTC 2 cut(s) 108, 452
HpaI GTTAAC 1 cut(s) 243
HpaII CCGG 4 cut(s) 86, 347, 447, 458
HphI GGTGA 2 cut(s) 364, 472
Hpy166II GTNNAC 2 cut(s) 243, 286
Hpy188I TCNGA 2 cut(s) 275, 397
Hpy188III TCNNGA 2 cut(s) 209, 383
Hpy8I GTNNAC 2 cut(s) 243, 286
Hpy99I CGWCG 1 cut(s) 202
HpyAV CCTTC 1 cut(s) 349
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4IV ACGT 5 cut(s) 234, 239, 408, 469, 521
HpyCH4V TGCA 3 cut(s) 114, 141, 309
HpyF10VI GCNNNNNNNGC 1 cut(s) 356
HpyF3I CTNAG 2 cut(s) 41, 384
HpySE526I ACGT 5 cut(s) 234, 239, 408, 469, 521
Hsp92II CATG 1 cut(s) 488
KspAI GTTAAC 1 cut(s) 243
Kzo9I GATC 4 cut(s) 89, 160, 201, 361
LpnPI CCDG 8 cut(s) 99, 360, 396, 408, 435, 452, 460, 471
LweI GCATC 3 cut(s) 150, 202, 318
MaeI CTAG 2 cut(s) 93, 165
MaeII ACGT 5 cut(s) 234, 239, 408, 469, 521
MaeIII GTNAC 5 cut(s) 63, 125, 235, 460, 470
MalI GATC 4 cut(s) 91, 162, 203, 363
MboI GATC 4 cut(s) 89, 160, 201, 361
MboII GAAGA 1 cut(s) 385
MflI RGATCY 1 cut(s) 89
MluCI AATT 2 cut(s) 72, 227
MlyI GAGTC 1 cut(s) 102
MnlI CCTC 6 cut(s) 93, 187, 269, 307, 379, 427
Mph1103I ATGCAT 1 cut(s) 143
MseI TTAA 1 cut(s) 242
MspI CCGG 4 cut(s) 86, 347, 447, 458
MspR9I CCNGG 3 cut(s) 87, 423, 448
MvaI CCWGG 1 cut(s) 423
MvnI CGCG 1 cut(s) 282
MwoI GCNNNNNNNGC 1 cut(s) 356
NciI CCSGG 2 cut(s) 87, 448
NdeII GATC 4 cut(s) 89, 160, 201, 361
NlaIII CATG 1 cut(s) 488
NmuCI GTSAC 3 cut(s) 63, 235, 460
NsiI ATGCAT 1 cut(s) 143
PfeI GAWTC 1 cut(s) 452
PfoI TCCNGGA 1 cut(s) 85
PkrI GCNGC 2 cut(s) 281, 328
PleI GAGTC 1 cut(s) 102
PpsI GAGTC 1 cut(s) 102
Ppu21I YACGTR 1 cut(s) 470
Psp1406I AACGTT 1 cut(s) 521
Psp6I CCWGG 1 cut(s) 421
PspGI CCWGG 1 cut(s) 421
PspPI GGNCC 1 cut(s) 436
PsuI RGATCY 1 cut(s) 89
RsaI GTAC 1 cut(s) 102
RsaNI GTAC 1 cut(s) 101
SaqAI TTAA 1 cut(s) 242
SatI GCNGC 2 cut(s) 280, 327
Sau3AI GATC 4 cut(s) 89, 160, 201, 361
Sau96I GGNCC 1 cut(s) 436
SchI GAGTC 1 cut(s) 102
ScrFI CCNGG 3 cut(s) 87, 423, 448
SetI ASST 8 cut(s) 179, 237, 242, 341, 411, 427, 472, 524
SfaNI GCATC 3 cut(s) 150, 202, 318
SinI GGWCC 1 cut(s) 436
Sse9I AATT 2 cut(s) 72, 227
SsiI CCGC 4 cut(s) 280, 326, 329, 350
SspI AATATT 1 cut(s) 7
SspMI CTAG 2 cut(s) 93, 165
StyD4I CCNGG 3 cut(s) 85, 421, 446
TaaI ACNGT 1 cut(s) 125
TaiI ACGT 5 cut(s) 237, 242, 411, 472, 524
TaqI TCGA 3 cut(s) 200, 210, 312
TasI AATT 2 cut(s) 72, 227
TatI WGTACW 1 cut(s) 100
TauI GCSGC 2 cut(s) 282, 329
TfiI GAWTC 1 cut(s) 452
Tru1I TTAA 1 cut(s) 242
Tru9I TTAA 1 cut(s) 242
TseFI GTSAC 3 cut(s) 63, 235, 460
Tsp45I GTSAC 3 cut(s) 63, 235, 460
TspDTI ATGAA 2 cut(s) 17, 416
TspGWI ACGGA 1 cut(s) 315
VpaK11BI GGWCC 1 cut(s) 436
XapI RAATTY 1 cut(s) 227
XmiI GTMKAC 1 cut(s) 285
XspI CTAG 2 cut(s) 93, 165
Zsp2I ATGCAT 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.