Rmu_sc0001084.1_g000025

Cell wall vacuolar inhibitor of fructosidase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001084.1
OG0017878
Physical Location & Seq
Reverse (-)
104576 .. 106541
1966 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001084.1_g000025.1.cds

Sequence Viewer

Length: 477 bp
atgatcaaacacttcgttagccgaggactagtcaaagcccagaccattggcccaaatgcccatgcgaaaccaatagtttccatcaggtcggtccaaacaagactaaaggcccgtaaacaggaccctgagagtgccggtgcagatgtcaaaggcttagcccgcataatggctaatgttatacttaggaaagtcacaaatgatacccagcacaagatcgaggggatgattgcgcatagcccaggagaccaacgcttaactaaatgtagagatgattacaaagtaatcgaaacaaaaattgactccaccaatgcatctattactaaaggcgattataagtcggcagaggaaagcatgaatgatgctatcgctgaagctaatatatgcgaaggtcgttttccaggcagatctcctctgatatatgagaacaaacttgaggctgatattgttgatttagctgctgaaatagtaattatgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMEI

Protein Analysis

158

Amino Acids

17.37

Weight (kDa)

8.87

Isoelectric Point (pI)

32.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017878)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17150 AT3G17152
fragaria_vesca FvH4_4g25210
rosa_chinensis RchiOBHm_Chr4g0432401
rosa_multiflora Rmu_co8060982.1_g000001 Rmu_sc0001084.1_g000025 Rmu_sc0016445.1_g000009
rosa_rugosa Rorug04G0258200
rosa_samantha Rh4BG321700 Rh4CG336800 Rh4DG317300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 333
Acc16I TGCGCA 1 cut(s) 231
AciI CCGC 1 cut(s) 160
AcuI CTGAAG 1 cut(s) 390
AfiI CCNNNNNNNGG 2 cut(s) 118, 166
AhlI ACTAGT 1 cut(s) 28
AjnI CCWGG 2 cut(s) 238, 397
AluBI AGCT 2 cut(s) 374, 455
AluI AGCT 2 cut(s) 374, 455
Alw26I GTCTC 1 cut(s) 237
AoxI GGCC 2 cut(s) 49, 108
ApeKI GCWGC 1 cut(s) 455
AspLEI GCGC 1 cut(s) 232
AspS9I GGNCC 4 cut(s) 50, 91, 109, 121
AvaII GGWCC 2 cut(s) 91, 121
BbvI GCAGC 1 cut(s) 442
BccI CCATC 1 cut(s) 89
BciT130I CCWGG 2 cut(s) 240, 399
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 237
BcuI ACTAGT 1 cut(s) 28
BfaI CTAG 1 cut(s) 29
BglII AGATCT 1 cut(s) 404
BisI GCNGC 1 cut(s) 456
BlpI GCTNAGC 1 cut(s) 154
BlsI GCNGC 1 cut(s) 457
Bme1390I CCNGG 2 cut(s) 240, 399
Bme18I GGWCC 2 cut(s) 91, 121
BmgT120I GGNCC 4 cut(s) 50, 91, 109, 121
BmiI GGNNCC 1 cut(s) 123
BmrFI CCNGG 2 cut(s) 240, 399
BmsI GCATC 2 cut(s) 320, 349
Bpu1102I GCTNAGC 1 cut(s) 154
BpuEI CTTGAG 1 cut(s) 452
BsaI GGTCTC 1 cut(s) 237
BsaJI CCNNGG 2 cut(s) 22, 238
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 166
Bse118I RCCGGY 1 cut(s) 134
BseBI CCWGG 2 cut(s) 240, 399
BseDI CCNNGG 2 cut(s) 22, 238
BseGI GGATG 1 cut(s) 228
BseLI CCNNNNNNNGG 2 cut(s) 118, 166
BseMII CTCAG 1 cut(s) 117
BseRI GAGGAG 1 cut(s) 399
BseXI GCAGC 1 cut(s) 442
BseYI CCCAGC 1 cut(s) 204
BsgI GTGCAG 1 cut(s) 159
BshFI GGCC 2 cut(s) 51, 110
BsiSI CCGG 1 cut(s) 135
BslI CCNNNNNNNGG 2 cut(s) 118, 166
BsmAI GTCTC 1 cut(s) 237
BsnI GGCC 2 cut(s) 51, 110
Bso31I GGTCTC 1 cut(s) 237
Bsp143I GATC 3 cut(s) 3, 213, 404
Bsp1720I GCTNAGC 1 cut(s) 154
BspACI CCGC 1 cut(s) 160
BspANI GGCC 2 cut(s) 51, 110
BspCNI CTCAG 1 cut(s) 118
BspLI GGNNCC 1 cut(s) 123
BspTNI GGTCTC 1 cut(s) 237
BsrFI RCCGGY 1 cut(s) 134
BssAI RCCGGY 1 cut(s) 134
BssECI CCNNGG 2 cut(s) 22, 238
BssMI GATC 3 cut(s) 3, 213, 404
Bst2UI CCWGG 2 cut(s) 240, 399
BstC8I GCNNGC 1 cut(s) 160
BstDEI CTNAG 3 cut(s) 126, 154, 182
BstF5I GGATG 1 cut(s) 228
BstHHI GCGC 1 cut(s) 232
BstKTI GATC 3 cut(s) 6, 216, 407
BstMAI GTCTC 1 cut(s) 237
BstMBI GATC 3 cut(s) 3, 213, 404
BstMWI GCNNNNNNNGC 1 cut(s) 159
BstNI CCWGG 2 cut(s) 240, 399
BstSCI CCNGG 2 cut(s) 238, 397
BstV1I GCAGC 1 cut(s) 442
BstX2I RGATCY 1 cut(s) 404
BstXI CCANNNNNNTGG 1 cut(s) 47
BstYI RGATCY 1 cut(s) 404
BsuRI GGCC 2 cut(s) 51, 110
BtsCI GGATG 1 cut(s) 228
Cac8I GCNNGC 1 cut(s) 160
CfoI GCGC 1 cut(s) 232
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 4 cut(s) 50, 91, 109, 121
CviAII CATG 2 cut(s) 62, 352
DdeI CTNAG 3 cut(s) 126, 154, 182
DpnI GATC 3 cut(s) 5, 215, 406
DpnII GATC 3 cut(s) 3, 213, 404
Eco31I GGTCTC 1 cut(s) 237
Eco47I GGWCC 2 cut(s) 91, 121
Eco57I CTGAAG 1 cut(s) 390
EcoO109I RGGNCCY 1 cut(s) 121
EcoRII CCWGG 2 cut(s) 238, 397
EcoT22I ATGCAT 1 cut(s) 313
FaeI CATG 2 cut(s) 65, 355
FatI CATG 2 cut(s) 61, 351
FauI CCCGC 1 cut(s) 167
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 1 cut(s) 456
FokI GGATG 1 cut(s) 235
Fsp4HI GCNGC 1 cut(s) 456
FspBI CTAG 1 cut(s) 29
FspI TGCGCA 1 cut(s) 231
GlaI GCGC 1 cut(s) 231
GluI GCNGC 1 cut(s) 456
GsaI CCCAGC 1 cut(s) 208
HaeIII GGCC 2 cut(s) 51, 110
HapII CCGG 1 cut(s) 135
HhaI GCGC 1 cut(s) 232
Hin1II CATG 2 cut(s) 65, 355
Hin6I GCGC 1 cut(s) 230
HinP1I GCGC 1 cut(s) 230
HinfI GANTC 1 cut(s) 299
HpaII CCGG 1 cut(s) 135
Hpy166II GTNNAC 1 cut(s) 116
Hpy188I TCNGA 1 cut(s) 414
Hpy8I GTNNAC 1 cut(s) 116
HpyAV CCTTC 1 cut(s) 380
HpyCH4V TGCA 2 cut(s) 140, 311
HpyF10VI GCNNNNNNNGC 1 cut(s) 159
HpyF3I CTNAG 3 cut(s) 126, 154, 182
Hsp92II CATG 2 cut(s) 65, 355
HspAI GCGC 1 cut(s) 230
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 213, 404
Lsp1109I GCAGC 1 cut(s) 442
LweI GCATC 2 cut(s) 320, 349
MaeI CTAG 1 cut(s) 29
MaeIII GTNAC 1 cut(s) 190
MalI GATC 3 cut(s) 5, 215, 406
MboI GATC 3 cut(s) 3, 213, 404
MflI RGATCY 1 cut(s) 404
MluCI AATT 2 cut(s) 294, 468
MlyI GAGTC 1 cut(s) 293
MnlI CCTC 5 cut(s) 17, 211, 337, 420, 427
Mph1103I ATGCAT 1 cut(s) 313
MseI TTAA 1 cut(s) 254
MspI CCGG 1 cut(s) 135
MspR9I CCNGG 2 cut(s) 240, 399
MvaI CCWGG 2 cut(s) 240, 399
MwoI GCNNNNNNNGC 1 cut(s) 159
NdeII GATC 3 cut(s) 3, 213, 404
NlaIII CATG 2 cut(s) 65, 355
NlaIV GGNNCC 1 cut(s) 123
NmeAIII GCCGAG 1 cut(s) 47
NmuCI GTSAC 1 cut(s) 190
NsbI TGCGCA 1 cut(s) 231
NsiI ATGCAT 1 cut(s) 313
PkrI GCNGC 1 cut(s) 457
PleI GAGTC 1 cut(s) 293
PpsI GAGTC 1 cut(s) 293
PpuMI RGGWCCY 1 cut(s) 121
PsiI TTATAA 1 cut(s) 333
Psp5II RGGWCCY 1 cut(s) 121
Psp6I CCWGG 2 cut(s) 238, 397
PspFI CCCAGC 1 cut(s) 204
PspGI CCWGG 2 cut(s) 238, 397
PspN4I GGNNCC 1 cut(s) 123
PspPI GGNCC 4 cut(s) 50, 91, 109, 121
PspPPI RGGWCCY 1 cut(s) 121
PsuI RGATCY 1 cut(s) 404
SaqAI TTAA 1 cut(s) 254
SatI GCNGC 1 cut(s) 456
Sau3AI GATC 3 cut(s) 3, 213, 404
Sau96I GGNCC 4 cut(s) 50, 91, 109, 121
SchI GAGTC 1 cut(s) 293
ScrFI CCNGG 2 cut(s) 240, 399
SetI ASST 4 cut(s) 89, 376, 391, 457
SfaNI GCATC 2 cut(s) 320, 349
SinI GGWCC 2 cut(s) 91, 121
SmlI CTYRAG 1 cut(s) 431
SmoI CTYRAG 1 cut(s) 431
SpeI ACTAGT 1 cut(s) 28
Sse9I AATT 2 cut(s) 294, 468
SsiI CCGC 1 cut(s) 160
SspMI CTAG 1 cut(s) 29
StyD4I CCNGG 2 cut(s) 238, 397
TaqI TCGA 2 cut(s) 216, 285
TaqII GACCGA 1 cut(s) 79
TasI AATT 2 cut(s) 294, 468
Tru1I TTAA 1 cut(s) 254
Tru9I TTAA 1 cut(s) 254
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 1 cut(s) 455
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 1 cut(s) 368
VpaK11BI GGWCC 2 cut(s) 91, 121
XspI CTAG 1 cut(s) 29
Zsp2I ATGCAT 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.