AT3G17668

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012233
Physical Location & Seq
Forward (+)
6039408 .. 6040633
1226 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G17668.1

Sequence Viewer

Length: 408 bp
ATGGCGGTGAACGCGTGTCTATCTCCGCCGGAGATGATGGCTGTCCGGCCAGGGGAAGGCGTTCCGAATTCAAAATCTACGCAGGGAAAAACTAGGCTCTATCTCACCAAACCTTCATGGATAGTCAGAACTCAGTCTGGAGCTAAGACGTGTATGAAGTCGAAGGCGAAAGGACGATGCGTAATCTGCCATGGAAGTGGAAGAGTCGATTGTTTCAATTGTTGTGGGAAAGGGAGGACTAATTGTGTGGATGTGGAAATGCTTCCAAGAGGAGAATGGCCTAAATGGTGCAAGAGTTGTGGAGGGAGTGGATTAAGTGACTGTTCTCGCTGTCTTGGCACCGGAGAGTACAGATACATCATGGGTTTCCGCTTCTTAAACCAAAACGATGATGCCGATCCACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

14.75

Weight (kDa)

9.09

Isoelectric Point (pI)

24.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012233)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17668 AT3G17668
fragaria_vesca FvH4_7g08430 FvH4_7g08430
malus_domestica MD02G1228500.v1.1
prunus_persica Prupe.2G111200_v2.0.a1 Prupe.2G111200_v2.0.a1 Prupe.2G111200_v2.0.a1
pyrus_communis pycom02g19720
rosa_chinensis RchiOBHm_Chr0c20g0500251
rosa_laevigata RLG00000028995
rosa_multiflora Rmu_sc0010800.1_g000008
rosa_roxburghii Rroxscaffold_4G00311020
rosa_rugosa Rorug01G0165400
rosa_samantha Rh1AG180500 Rh1BG148700 Rh1CG167400 Rh1DG180600
rosa_wichuraiana Rw1G015000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 338
AccII CGCG 1 cut(s) 14
AciI CCGC 3 cut(s) 5, 26, 370
AclWI GGATC 1 cut(s) 392
AcoI YGGCCR 1 cut(s) 47
AcsI RAATTY 1 cut(s) 67
AfaI GTAC 1 cut(s) 350
AfiI CCNNNNNNNGG 2 cut(s) 52, 56
AflIII ACRYGT 2 cut(s) 12, 149
AgsI TTSAA 2 cut(s) 72, 217
AjiI CACGTC 1 cut(s) 150
AjnI CCWGG 1 cut(s) 49
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
AlwI GGATC 1 cut(s) 392
AoxI GGCC 2 cut(s) 47, 278
ApoI RAATTY 1 cut(s) 67
Asp700I GAANNNNTTC 2 cut(s) 60, 261
AsuHPI GGTGA 2 cut(s) 19, 97
BanI GGYRCC 1 cut(s) 338
BccI CCATC 1 cut(s) 31
BciT130I CCWGG 1 cut(s) 51
BfaI CTAG 1 cut(s) 93
Bme1390I CCNGG 1 cut(s) 51
BmgBI CACGTC 1 cut(s) 150
BmiI GGNNCC 1 cut(s) 340
BmrFI CCNGG 1 cut(s) 51
BmsI GCATC 2 cut(s) 167, 382
BpmI CTGGAG 1 cut(s) 159
BsaBI GATNNNNATC 1 cut(s) 396
BsaJI CCNNGG 2 cut(s) 50, 190
BsaWI WCCGGW 1 cut(s) 341
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 56
Bse8I GATNNNNATC 1 cut(s) 396
BseBI CCWGG 1 cut(s) 51
BseDI CCNNGG 2 cut(s) 50, 190
BseGI GGATG 1 cut(s) 256
BseJI GATNNNNATC 1 cut(s) 396
BseLI CCNNNNNNNGG 2 cut(s) 52, 56
BseMII CTCAG 1 cut(s) 146
BseRI GAGGAG 1 cut(s) 285
Bsh1236I CGCG 1 cut(s) 14
BshFI GGCC 2 cut(s) 49, 280
BshNI GGYRCC 1 cut(s) 338
BsiSI CCGG 3 cut(s) 29, 46, 342
BslI CCNNNNNNNGG 2 cut(s) 52, 56
BsnI GGCC 2 cut(s) 49, 280
Bsp143I GATC 1 cut(s) 397
Bsp19I CCATGG 1 cut(s) 190
BspACI CCGC 3 cut(s) 5, 26, 370
BspANI GGCC 2 cut(s) 49, 280
BspCNI CTCAG 1 cut(s) 145
BspFNI CGCG 1 cut(s) 14
BspLI GGNNCC 1 cut(s) 340
BspPI GGATC 1 cut(s) 392
BspT107I GGYRCC 1 cut(s) 338
BssECI CCNNGG 2 cut(s) 50, 190
BssMI GATC 1 cut(s) 397
BssT1I CCWWGG 1 cut(s) 190
Bst2UI CCWGG 1 cut(s) 51
Bst4CI ACNGT 1 cut(s) 323
Bst6I CTCTTC 1 cut(s) 196
BstDEI CTNAG 2 cut(s) 132, 144
BstDSI CCRYGG 1 cut(s) 190
BstF5I GGATG 1 cut(s) 256
BstFNI CGCG 1 cut(s) 14
BstKTI GATC 1 cut(s) 400
BstMBI GATC 1 cut(s) 397
BstMWI GCNNNNNNNGC 3 cut(s) 11, 186, 336
BstNI CCWGG 1 cut(s) 51
BstSCI CCNGG 1 cut(s) 49
BstUI CGCG 1 cut(s) 14
BstXI CCANNNNNNTGG 1 cut(s) 197
BsuRI GGCC 2 cut(s) 49, 280
BtgI CCRYGG 1 cut(s) 190
BtrI CACGTC 1 cut(s) 150
BtsCI GGATG 1 cut(s) 256
Csp6I GTAC 1 cut(s) 349
CspCI CAANNNNNGTGG 4 cut(s) 205, 240, 280, 315
CviAII CATG 3 cut(s) 117, 191, 361
CviJI RGCY 5 cut(s) 41, 49, 97, 143, 280
CviKI_1 RGCY 5 cut(s) 41, 49, 97, 143, 280
CviQI GTAC 1 cut(s) 349
DdeI CTNAG 2 cut(s) 132, 144
DpnI GATC 1 cut(s) 399
DpnII GATC 1 cut(s) 397
EaeI YGGCCR 1 cut(s) 47
Eam1104I CTCTTC 1 cut(s) 196
EarI CTCTTC 1 cut(s) 196
EciI GGCGGA 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 190
EcoRI GAATTC 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 49
EcoT14I CCWWGG 1 cut(s) 190
ErhI CCWWGG 1 cut(s) 190
FaeI CATG 3 cut(s) 120, 194, 364
FaiI YATR 4 cut(s) 118, 155, 192, 362
FatI CATG 3 cut(s) 116, 190, 360
FokI GGATG 1 cut(s) 263
FspBI CTAG 1 cut(s) 93
GsuI CTGGAG 1 cut(s) 159
HaeIII GGCC 2 cut(s) 49, 280
HapII CCGG 3 cut(s) 29, 46, 342
Hin1II CATG 3 cut(s) 120, 194, 364
HinfI GANTC 1 cut(s) 204
HpaII CCGG 3 cut(s) 29, 46, 342
HphI GGTGA 2 cut(s) 19, 97
Hpy166II GTNNAC 1 cut(s) 10
Hpy188I TCNGA 2 cut(s) 66, 128
Hpy188III TCNNGA 1 cut(s) 138
Hpy8I GTNNAC 1 cut(s) 10
HpyAV CCTTC 3 cut(s) 50, 123, 157
HpyCH4III ACNGT 1 cut(s) 323
HpyCH4IV ACGT 1 cut(s) 149
HpyCH4V TGCA 1 cut(s) 291
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 186, 336
HpyF3I CTNAG 2 cut(s) 132, 144
HpySE526I ACGT 1 cut(s) 149
Hsp92II CATG 3 cut(s) 120, 194, 364
Kzo9I GATC 1 cut(s) 397
LmnI GCTCC 1 cut(s) 140
LpnPI CCDG 7 cut(s) 36, 42, 59, 63, 68, 123, 355
LweI GCATC 2 cut(s) 167, 382
MaeI CTAG 1 cut(s) 93
MaeII ACGT 1 cut(s) 149
MaeIII GTNAC 1 cut(s) 317
MalI GATC 1 cut(s) 399
MboI GATC 1 cut(s) 397
MboII GAAGA 1 cut(s) 213
MfeI CAATTG 1 cut(s) 217
MluCI AATT 3 cut(s) 67, 217, 241
MluI ACGCGT 1 cut(s) 12
MlyI GAGTC 1 cut(s) 213
MnlI CCTC 3 cut(s) 228, 263, 296
MroXI GAANNNNTTC 2 cut(s) 60, 261
MseI TTAA 2 cut(s) 314, 377
MslI CAYNNNNRTG 1 cut(s) 195
MspI CCGG 3 cut(s) 29, 46, 342
MspR9I CCNGG 1 cut(s) 51
MunI CAATTG 1 cut(s) 217
MvaI CCWGG 1 cut(s) 51
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 3 cut(s) 11, 186, 336
NcoI CCATGG 1 cut(s) 190
NdeII GATC 1 cut(s) 397
NlaIII CATG 3 cut(s) 120, 194, 364
NlaIV GGNNCC 1 cut(s) 340
NmuCI GTSAC 1 cut(s) 317
PcsI WCGNNNNNNNCGW 1 cut(s) 393
PdmI GAANNNNTTC 2 cut(s) 60, 261
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
Psp6I CCWGG 1 cut(s) 49
PspGI CCWGG 1 cut(s) 49
PspN4I GGNNCC 1 cut(s) 340
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
RseI CAYNNNNRTG 1 cut(s) 195
SaqAI TTAA 2 cut(s) 314, 377
Sau3AI GATC 1 cut(s) 397
SchI GAGTC 1 cut(s) 213
ScrFI CCNGG 1 cut(s) 51
SetI ASST 3 cut(s) 115, 145, 152
SfaNI GCATC 2 cut(s) 167, 382
SmiMI CAYNNNNRTG 1 cut(s) 195
Sse9I AATT 3 cut(s) 67, 217, 241
SsiI CCGC 3 cut(s) 5, 26, 370
SspMI CTAG 1 cut(s) 93
StyD4I CCNGG 1 cut(s) 49
StyI CCWWGG 1 cut(s) 190
TaaI ACNGT 1 cut(s) 323
TaiI ACGT 1 cut(s) 152
TaqI TCGA 2 cut(s) 161, 207
TasI AATT 3 cut(s) 67, 217, 241
TatI WGTACW 1 cut(s) 348
Tru1I TTAA 2 cut(s) 314, 377
Tru9I TTAA 2 cut(s) 314, 377
TseFI GTSAC 1 cut(s) 317
Tsp45I GTSAC 1 cut(s) 317
TspDTI ATGAA 2 cut(s) 105, 170
XapI RAATTY 1 cut(s) 67
XcmI CCANNNNNNNNNTGG 1 cut(s) 273
XmnI GAANNNNTTC 2 cut(s) 60, 261
XspI CTAG 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.