Prupe.2G111200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0012233
Physical Location & Seq
Reverse (-)
16923107 .. 16925825
2719 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G111200.1

Sequence Viewer

Length: 477 bp
ATGGCACTTCGAAGCCTGAGCTCATTTACAGCCGTCCGATTCGAAGCTCCCAAATCCAACGGTGCTCCTATTCCTCCTCCACGGCATCAAGACCCTTTGCCCCGACTATCCGTCACCAAGCCCTCTTGGGTCGTCCGCACAGAGTCAAATGTTCACAGAGAAGTAAGAAGGAAGCCGGATCCACCTTGTGAGGTCTGCACAGGGAGTGGAAGGGTCAATTGCCACGATTGTTATGGAACAGGTAGGACAAACTCAGTTGACATGCAAATGCTCCCCAAAGGGGAATGGCCAAAATGGTGCAGGACTTGTGGTGGAAGTGGTTTAGGTTACTGCTCCCGCTGCCTTGGGACTGGAGAGTATCGATATATAATGGGCTTTCAATTCATGAAGATGGATTCTTCTCATAACCAAGACAACAAGAATGAGGTTCAAAGGAATCAAGACCGCCGTACTGCTGCGGATTTCTATGAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

17.93

Weight (kDa)

8.99

Isoelectric Point (pI)

40.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012233)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17668 AT3G17668
fragaria_vesca FvH4_7g08430 FvH4_7g08430
malus_domestica MD02G1228500.v1.1
prunus_persica Prupe.2G111200_v2.0.a1 Prupe.2G111200_v2.0.a1 Prupe.2G111200_v2.0.a1
pyrus_communis pycom02g19720
rosa_chinensis RchiOBHm_Chr0c20g0500251
rosa_laevigata RLG00000028995
rosa_multiflora Rmu_sc0010800.1_g000008
rosa_roxburghii Rroxscaffold_4G00311020
rosa_rugosa Rorug01G0165400
rosa_samantha Rh1AG180500 Rh1BG148700 Rh1CG167400 Rh1DG180600
rosa_wichuraiana Rw1G015000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 136, 337, 445, 458
AclWI GGATC 2 cut(s) 173, 186
AcoI YGGCCR 1 cut(s) 287
AdeI CACNNNGTG 1 cut(s) 188
AfaI GTAC 1 cut(s) 451
AfiI CCNNNNNNNGG 1 cut(s) 280
AgsI TTSAA 2 cut(s) 380, 431
AhdI GACNNNNNGTC 1 cut(s) 110
AluBI AGCT 2 cut(s) 21, 47
AluI AGCT 2 cut(s) 21, 47
Alw21I GWGCWC 2 cut(s) 23, 67
AlwI GGATC 2 cut(s) 173, 186
AoxI GGCC 1 cut(s) 287
ApeKI GCWGC 2 cut(s) 339, 455
AsuHPI GGTGA 1 cut(s) 106
AsuII TTCGAA 2 cut(s) 10, 42
BalI TGGCCA 1 cut(s) 289
BamHI GGATCC 1 cut(s) 178
BanII GRGCYC 1 cut(s) 23
Bbv12I GWGCWC 2 cut(s) 23, 67
BbvI GCAGC 2 cut(s) 326, 442
BccI CCATC 1 cut(s) 385
BceAI ACGGC 3 cut(s) 17, 98, 432
BisI GCNGC 2 cut(s) 340, 456
BlsI GCNGC 2 cut(s) 341, 457
BmeRI GACNNNNNGTC 1 cut(s) 110
BmiI GGNNCC 1 cut(s) 180
BmsI GCATC 1 cut(s) 94
BpmI CTGGAG 1 cut(s) 372
Bpu10I CCTNAGC 1 cut(s) 17
Bpu14I TTCGAA 2 cut(s) 10, 42
Bsa29I ATCGAT 1 cut(s) 361
BsaJI CCNNGG 2 cut(s) 80, 343
Bsc4I CCNNNNNNNGG 1 cut(s) 280
Bse1I ACTGG 1 cut(s) 355
BseCI ATCGAT 1 cut(s) 361
BseDI CCNNGG 2 cut(s) 80, 343
BseLI CCNNNNNNNGG 1 cut(s) 280
BseMII CTCAG 2 cut(s) 8, 267
BseNI ACTGG 1 cut(s) 355
BseRI GAGGAG 1 cut(s) 66
BseXI GCAGC 2 cut(s) 326, 442
BsgI GTGCAG 2 cut(s) 181, 319
BshFI GGCC 1 cut(s) 289
BshVI ATCGAT 1 cut(s) 361
BsiHKAI GWGCWC 2 cut(s) 23, 67
BsiSI CCGG 1 cut(s) 176
BslFI GGGAC 1 cut(s) 361
BslI CCNNNNNNNGG 1 cut(s) 280
BsmFI GGGAC 1 cut(s) 361
BsnI GGCC 1 cut(s) 289
Bsp119I TTCGAA 2 cut(s) 10, 42
Bsp1286I GDGCHC 2 cut(s) 23, 67
Bsp143I GATC 1 cut(s) 178
BspACI CCGC 4 cut(s) 136, 337, 445, 458
BspANI GGCC 1 cut(s) 289
BspCNI CTCAG 2 cut(s) 9, 266
BspDI ATCGAT 1 cut(s) 361
BspHI TCATGA 1 cut(s) 384
BspLI GGNNCC 1 cut(s) 180
BspPI GGATC 2 cut(s) 173, 186
BspT104I TTCGAA 2 cut(s) 10, 42
BsrI ACTGG 1 cut(s) 355
BssECI CCNNGG 2 cut(s) 80, 343
BssMI GATC 1 cut(s) 178
BssT1I CCWWGG 1 cut(s) 343
Bst4CI ACNGT 1 cut(s) 62
BstBI TTCGAA 2 cut(s) 10, 42
BstDEI CTNAG 2 cut(s) 17, 253
BstDSI CCRYGG 1 cut(s) 80
BstKTI GATC 1 cut(s) 181
BstMBI GATC 1 cut(s) 178
BstMWI GCNNNNNNNGC 1 cut(s) 339
BstNSI RCATGY 1 cut(s) 265
BstV1I GCAGC 2 cut(s) 326, 442
BstX2I RGATCY 1 cut(s) 178
BstYI RGATCY 1 cut(s) 178
Bsu15I ATCGAT 1 cut(s) 361
BsuRI GGCC 1 cut(s) 289
BsuTUI ATCGAT 1 cut(s) 361
BtgI CCRYGG 1 cut(s) 80
CciI TCATGA 1 cut(s) 384
ClaI ATCGAT 1 cut(s) 361
Csp6I GTAC 1 cut(s) 450
CviAII CATG 2 cut(s) 262, 385
CviJI RGCY 8 cut(s) 15, 21, 32, 47, 121, 175, 289, 375
CviKI_1 RGCY 8 cut(s) 15, 21, 32, 47, 121, 175, 289, 375
CviQI GTAC 1 cut(s) 450
DdeI CTNAG 2 cut(s) 17, 253
DpnI GATC 1 cut(s) 180
DpnII GATC 1 cut(s) 178
DraIII CACNNNGTG 1 cut(s) 188
DriI GACNNNNNGTC 1 cut(s) 110
EaeI YGGCCR 1 cut(s) 287
Eam1105I GACNNNNNGTC 1 cut(s) 110
Ecl136II GAGCTC 1 cut(s) 21
Eco130I CCWWGG 1 cut(s) 343
Eco24I GRGCYC 1 cut(s) 23
Eco53kI GAGCTC 1 cut(s) 21
EcoICRI GAGCTC 1 cut(s) 21
EcoT14I CCWWGG 1 cut(s) 343
EcoT38I GRGCYC 1 cut(s) 23
ErhI CCWWGG 1 cut(s) 343
FaeI CATG 2 cut(s) 265, 388
FaiI YATR 7 cut(s) 234, 263, 366, 368, 386, 405, 468
FaqI GGGAC 1 cut(s) 361
FatI CATG 2 cut(s) 261, 384
FauI CCCGC 1 cut(s) 344
Fnu4HI GCNGC 2 cut(s) 340, 456
FriOI GRGCYC 1 cut(s) 23
Fsp4HI GCNGC 2 cut(s) 340, 456
GluI GCNGC 2 cut(s) 340, 456
GsuI CTGGAG 1 cut(s) 372
HaeIII GGCC 1 cut(s) 289
HapII CCGG 1 cut(s) 176
Hin1II CATG 2 cut(s) 265, 388
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HinfI GANTC 4 cut(s) 39, 143, 395, 436
HpaII CCGG 1 cut(s) 176
HphI GGTGA 1 cut(s) 106
Hpy166II GTNNAC 2 cut(s) 154, 259
Hpy188I TCNGA 1 cut(s) 38
Hpy188III TCNNGA 3 cut(s) 89, 385, 440
Hpy8I GTNNAC 2 cut(s) 154, 259
HpyAV CCTTC 2 cut(s) 162, 204
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4V TGCA 3 cut(s) 198, 265, 300
HpyF10VI GCNNNNNNNGC 1 cut(s) 339
HpyF3I CTNAG 2 cut(s) 17, 253
Hsp92II CATG 2 cut(s) 265, 388
Kzo9I GATC 1 cut(s) 178
LmnI GCTCC 4 cut(s) 52, 70, 276, 338
LpnPI CCDG 6 cut(s) 29, 186, 189, 225, 286, 336
Lsp1109I GCAGC 2 cut(s) 326, 442
LweI GCATC 1 cut(s) 94
MaeIII GTNAC 2 cut(s) 112, 326
MalI GATC 1 cut(s) 180
MboI GATC 1 cut(s) 178
MboII GAAGA 2 cut(s) 390, 400
MfeI CAATTG 1 cut(s) 217
MflI RGATCY 1 cut(s) 178
MhlI GDGCHC 2 cut(s) 23, 67
MlsI TGGCCA 1 cut(s) 289
MluCI AATT 2 cut(s) 217, 380
MluNI TGGCCA 1 cut(s) 289
MlyI GAGTC 1 cut(s) 152
MmeI TCCRAC 1 cut(s) 81
MnlI CCTC 5 cut(s) 84, 87, 133, 184, 418
Mox20I TGGCCA 1 cut(s) 289
MscI TGGCCA 1 cut(s) 289
MslI CAYNNNNRTG 2 cut(s) 266, 389
Msp20I TGGCCA 1 cut(s) 289
MspA1I CMGCKG 1 cut(s) 339
MspI CCGG 1 cut(s) 176
MunI CAATTG 1 cut(s) 217
MwoI GCNNNNNNNGC 1 cut(s) 339
NdeII GATC 1 cut(s) 178
NlaIII CATG 2 cut(s) 265, 388
NlaIV GGNNCC 1 cut(s) 180
NmuCI GTSAC 1 cut(s) 112
NspI RCATGY 1 cut(s) 265
NspV TTCGAA 2 cut(s) 10, 42
PagI TCATGA 1 cut(s) 384
PfeI GAWTC 3 cut(s) 39, 395, 436
PkrI GCNGC 2 cut(s) 341, 457
PleI GAGTC 1 cut(s) 151
PpsI GAGTC 1 cut(s) 151
Psp124BI GAGCTC 1 cut(s) 23
PspN4I GGNNCC 1 cut(s) 180
PsuI RGATCY 1 cut(s) 178
RsaI GTAC 1 cut(s) 451
RsaNI GTAC 1 cut(s) 450
RseI CAYNNNNRTG 2 cut(s) 266, 389
SacI GAGCTC 1 cut(s) 23
SatI GCNGC 2 cut(s) 340, 456
Sau3AI GATC 1 cut(s) 178
SchI GAGTC 1 cut(s) 152
SduI GDGCHC 2 cut(s) 23, 67
SetI ASST 7 cut(s) 23, 49, 187, 195, 244, 328, 429
SfaNI GCATC 1 cut(s) 94
SfuI TTCGAA 2 cut(s) 10, 42
SmiMI CAYNNNNRTG 2 cut(s) 266, 389
Sse9I AATT 2 cut(s) 217, 380
SsiI CCGC 4 cut(s) 136, 337, 445, 458
SstI GAGCTC 1 cut(s) 23
StyI CCWWGG 1 cut(s) 343
TaaI ACNGT 1 cut(s) 62
TaqI TCGA 3 cut(s) 10, 42, 361
TasI AATT 2 cut(s) 217, 380
TfiI GAWTC 3 cut(s) 39, 395, 436
TseFI GTSAC 1 cut(s) 112
TseI GCWGC 2 cut(s) 339, 455
Tsp45I GTSAC 1 cut(s) 112
TspDTI ATGAA 2 cut(s) 373, 401
TspGWI ACGGA 1 cut(s) 100
XceI RCATGY 1 cut(s) 265
XcmI CCANNNNNNNNNTGG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.