FvH4_7g08430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0012233
Physical Location & Seq
Reverse (-)
8302453 .. 8305897
3445 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g08430.t2

Sequence Viewer

Length: 471 bp
ATGTCACTCAGCGTCGTTGTGAGCCCAGTTACCGTCGTCCGAATGGAAGCCGCAACTTCCGATGGTGCTCTTCCCCCACGCAATCCAGACCCTTCGCCCCGACTCTCCTTCTCCAAGCCTTCTTGGGTCGTCCGCACCGAGTCAAATGTTCATAGAGAAGTAAGAAAGACCCCGGATCCTCCTTGTGAAATCTGCACTGGCAGTGGAAGGATCCATTGCCACTTTTGTCAGGGAAAAGGGAGGACAAACTCTGTCGACATGCAAATGCTACCCAAAGGAAAATGGCCAAGATGGTGCAAGACTTGTGGTGGAAGTGGTCTCAGTTACTGCTCCCGCTGTCTTGGAACTGGAGAGTACAGGTATATAATGGGCTTTCATTTCATGAAGATGGATTCAGCACATACAGGAGACAATGCGAATGCGGTTCAAAGTAATCAAAAACGACGCACTGCTGAGGATTTATATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

17.34

Weight (kDa)

9.13

Isoelectric Point (pI)

38.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012233)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17668 AT3G17668
fragaria_vesca FvH4_7g08430 FvH4_7g08430
malus_domestica MD02G1228500.v1.1
prunus_persica Prupe.2G111200_v2.0.a1 Prupe.2G111200_v2.0.a1 Prupe.2G111200_v2.0.a1
pyrus_communis pycom02g19720
rosa_chinensis RchiOBHm_Chr0c20g0500251
rosa_laevigata RLG00000028995
rosa_multiflora Rmu_sc0010800.1_g000008
rosa_roxburghii Rroxscaffold_4G00311020
rosa_rugosa Rorug01G0165400
rosa_samantha Rh1AG180500 Rh1BG148700 Rh1CG167400 Rh1DG180600
rosa_wichuraiana Rw1G015000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 255
AciI CCGC 4 cut(s) 51, 133, 334, 422
AclWI GGATC 4 cut(s) 170, 183, 205, 218
AcoI YGGCCR 1 cut(s) 284
AfaI GTAC 1 cut(s) 356
AgsI TTSAA 1 cut(s) 428
Alw21I GWGCWC 1 cut(s) 70
Alw26I GTCTC 2 cut(s) 323, 402
AlwI GGATC 4 cut(s) 170, 183, 205, 218
AlwNI CAGNNNCTG 1 cut(s) 327
AoxI GGCC 1 cut(s) 284
AsuC2I CCSGG 1 cut(s) 173
BalI TGGCCA 1 cut(s) 286
BamHI GGATCC 2 cut(s) 175, 210
BanII GRGCYC 1 cut(s) 26
Bbv12I GWGCWC 1 cut(s) 70
BbvCI CCTCAGC 1 cut(s) 453
BccI CCATC 3 cut(s) 56, 285, 382
BcnI CCSGG 1 cut(s) 173
BcoDI GTCTC 2 cut(s) 323, 402
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
Bme1390I CCNGG 1 cut(s) 173
BmiI GGNNCC 2 cut(s) 177, 212
BmrFI CCNGG 1 cut(s) 173
BmrI ACTGGG 1 cut(s) 20
BmuI ACTGGG 1 cut(s) 20
BpmI CTGGAG 1 cut(s) 369
Bpu10I CCTNAGC 1 cut(s) 453
BpuMI CCSGG 1 cut(s) 173
BsaI GGTCTC 1 cut(s) 323
BsaJI CCNNGG 1 cut(s) 171
Bse1I ACTGG 3 cut(s) 26, 202, 352
Bse3DI GCAATG 1 cut(s) 214
BseDI CCNNGG 1 cut(s) 171
BseMI GCAATG 1 cut(s) 214
BseMII CTCAG 3 cut(s) 22, 334, 444
BseNI ACTGG 3 cut(s) 26, 202, 352
BsgI GTGCAG 1 cut(s) 178
BshFI GGCC 1 cut(s) 286
BsiHKAI GWGCWC 1 cut(s) 70
BsiSI CCGG 1 cut(s) 173
BsmAI GTCTC 2 cut(s) 323, 402
BsmI GAATGC 1 cut(s) 424
BsnI GGCC 1 cut(s) 286
Bso31I GGTCTC 1 cut(s) 323
Bsp1286I GDGCHC 2 cut(s) 26, 70
Bsp143I GATC 2 cut(s) 175, 210
BspACI CCGC 4 cut(s) 51, 133, 334, 422
BspANI GGCC 1 cut(s) 286
BspCNI CTCAG 3 cut(s) 21, 333, 445
BspHI TCATGA 1 cut(s) 381
BspLI GGNNCC 2 cut(s) 177, 212
BspPI GGATC 4 cut(s) 170, 183, 205, 218
BspQI GCTCTTC 1 cut(s) 75
BspTNI GGTCTC 1 cut(s) 323
BsrDI GCAATG 1 cut(s) 214
BsrI ACTGG 3 cut(s) 26, 202, 352
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 2 cut(s) 175, 210
Bst4CI ACNGT 1 cut(s) 34
Bst6I CTCTTC 1 cut(s) 75
BstDEI CTNAG 3 cut(s) 8, 320, 453
BstKTI GATC 2 cut(s) 178, 213
BstMAI GTCTC 2 cut(s) 323, 402
BstMBI GATC 2 cut(s) 175, 210
BstNSI RCATGY 1 cut(s) 262
BstSCI CCNGG 1 cut(s) 171
BstX2I RGATCY 2 cut(s) 175, 210
BstYI RGATCY 2 cut(s) 175, 210
BsuRI GGCC 1 cut(s) 286
BtsI GCAGTG 2 cut(s) 208, 447
BtsIMutI CAGTG 3 cut(s) 195, 208, 447
CaiI CAGNNNCTG 1 cut(s) 327
CciI TCATGA 1 cut(s) 381
CseI GACGC 1 cut(s) 453
Csp6I GTAC 1 cut(s) 355
CspCI CAANNNNNGTGG 2 cut(s) 286, 321
CviAII CATG 2 cut(s) 259, 382
CviJI RGCY 5 cut(s) 24, 50, 118, 286, 372
CviKI_1 RGCY 5 cut(s) 24, 50, 118, 286, 372
CviQI GTAC 1 cut(s) 355
DdeI CTNAG 3 cut(s) 8, 320, 453
DpnI GATC 2 cut(s) 177, 212
DpnII GATC 2 cut(s) 175, 210
EaeI YGGCCR 1 cut(s) 284
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
Eco24I GRGCYC 1 cut(s) 26
Eco31I GGTCTC 1 cut(s) 323
EcoT38I GRGCYC 1 cut(s) 26
FaeI CATG 2 cut(s) 262, 385
FaiI YATR 8 cut(s) 153, 260, 363, 365, 383, 402, 463, 465
FatI CATG 2 cut(s) 258, 381
FauI CCCGC 1 cut(s) 341
FblI GTMKAC 1 cut(s) 255
Fnu4HI GCNGC 1 cut(s) 51
FriOI GRGCYC 1 cut(s) 26
Fsp4HI GCNGC 1 cut(s) 51
GluI GCNGC 1 cut(s) 51
GsuI CTGGAG 1 cut(s) 369
HaeIII GGCC 1 cut(s) 286
HapII CCGG 1 cut(s) 173
HgaI GACGC 1 cut(s) 453
Hin1II CATG 2 cut(s) 262, 385
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HinfI GANTC 3 cut(s) 102, 140, 392
HpaII CCGG 1 cut(s) 173
Hpy166II GTNNAC 1 cut(s) 256
Hpy188I TCNGA 2 cut(s) 41, 61
Hpy188III TCNNGA 2 cut(s) 86, 382
Hpy8I GTNNAC 1 cut(s) 256
Hpy99I CGWCG 3 cut(s) 17, 38, 447
HpyAV CCTTC 4 cut(s) 102, 118, 129, 201
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4V TGCA 3 cut(s) 195, 262, 297
HpyF3I CTNAG 3 cut(s) 8, 320, 453
Hsp92II CATG 2 cut(s) 262, 385
Kzo9I GATC 2 cut(s) 175, 210
LguI GCTCTTC 1 cut(s) 75
LmnI GCTCC 1 cut(s) 335
LpnPI CCDG 8 cut(s) 39, 99, 183, 186, 215, 333, 343, 390
MaeIII GTNAC 3 cut(s) 3, 28, 323
MalI GATC 2 cut(s) 177, 212
MboI GATC 2 cut(s) 175, 210
MboII GAAGA 2 cut(s) 62, 397
MflI RGATCY 2 cut(s) 175, 210
MhlI GDGCHC 2 cut(s) 26, 70
MlsI TGGCCA 1 cut(s) 286
MluNI TGGCCA 1 cut(s) 286
MlyI GAGTC 2 cut(s) 96, 149
MnlI CCTC 3 cut(s) 189, 234, 448
Mox20I TGGCCA 1 cut(s) 286
MscI TGGCCA 1 cut(s) 286
MslI CAYNNNNRTG 2 cut(s) 263, 386
Msp20I TGGCCA 1 cut(s) 286
MspA1I CMGCKG 1 cut(s) 336
MspI CCGG 1 cut(s) 173
MspR9I CCNGG 1 cut(s) 173
Mva1269I GAATGC 1 cut(s) 424
NciI CCSGG 1 cut(s) 173
NdeII GATC 2 cut(s) 175, 210
NlaIII CATG 2 cut(s) 262, 385
NlaIV GGNNCC 2 cut(s) 177, 212
NmuCI GTSAC 1 cut(s) 3
NspI RCATGY 1 cut(s) 262
PagI TCATGA 1 cut(s) 381
PciSI GCTCTTC 1 cut(s) 75
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PctI GAATGC 1 cut(s) 424
PfeI GAWTC 1 cut(s) 392
PkrI GCNGC 1 cut(s) 52
PleI GAGTC 2 cut(s) 96, 148
PpsI GAGTC 2 cut(s) 96, 148
PspN4I GGNNCC 2 cut(s) 177, 212
PstNI CAGNNNCTG 1 cut(s) 327
PsuI RGATCY 2 cut(s) 175, 210
RsaI GTAC 1 cut(s) 356
RsaNI GTAC 1 cut(s) 355
RseI CAYNNNNRTG 2 cut(s) 263, 386
SalI GTCGAC 1 cut(s) 254
SapI GCTCTTC 1 cut(s) 75
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 2 cut(s) 175, 210
SchI GAGTC 2 cut(s) 96, 149
ScrFI CCNGG 1 cut(s) 173
SduI GDGCHC 2 cut(s) 26, 70
SetI ASST 1 cut(s) 362
SmiMI CAYNNNNRTG 2 cut(s) 263, 386
SsiI CCGC 4 cut(s) 51, 133, 334, 422
StyD4I CCNGG 1 cut(s) 171
TaaI ACNGT 1 cut(s) 34
TaqI TCGA 1 cut(s) 255
TatI WGTACW 1 cut(s) 354
TauI GCSGC 1 cut(s) 53
TfiI GAWTC 1 cut(s) 392
TscAI CASTG 3 cut(s) 202, 208, 454
TseFI GTSAC 1 cut(s) 3
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 4 cut(s) 140, 365, 370, 398
TspRI CASTG 3 cut(s) 202, 208, 454
XceI RCATGY 1 cut(s) 262
XmiI GTMKAC 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.