Rroxscaffold_4G00311020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0012233
Physical Location & Seq
Forward (+)
33250974 .. 33254925
3952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00311020.1

Sequence Viewer

Length: 510 bp
ATGGCACTCAGAATCGTCCTGAGCCCAGTAACCTCCGTCCGATTGGAGGCCACAAATTCCAACGGTGCTCTTCCCCCACGGAATCCAGACCCGTCGCCCCGACTCTCCTTCTCCAAGCCTTCTTGGGTCGTCCGCACTGAGGCAAGAATGTGTGGGAGAAATGTAGAGGTGGTCGATGAGTCAAATGTTCGTAAAGAAGTAAGAAAGACCCCAGATCCTCCTTGTGATATCTGCACAGGGAGTGGAAGGATTGATTGCCACTTTTGTCAGGGAAAAGGGAGGACAAACTCTGTGGACATGCAAATGCTACCCAAAGGAAAATGGCCAAGATGGTGCAAGACTTGTGGTGGAAGTGGTCTCAGTTACTGCTCCCGCTGCCTTGGAACTGGAGAGTATAGGTATATAATGGGCTTTCATTTCATGAAGATGGATTCAGCTCATACAGGAGACAATTTGAATGTGGTTCAAAGTAATCAAAAACGACGCACTGCTAAGGACCTATATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

18.92

Weight (kDa)

9.37

Isoelectric Point (pI)

31.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012233)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17668 AT3G17668
fragaria_vesca FvH4_7g08430 FvH4_7g08430
malus_domestica MD02G1228500.v1.1
prunus_persica Prupe.2G111200_v2.0.a1 Prupe.2G111200_v2.0.a1 Prupe.2G111200_v2.0.a1
pyrus_communis pycom02g19720
rosa_chinensis RchiOBHm_Chr0c20g0500251
rosa_laevigata RLG00000028995
rosa_multiflora Rmu_sc0010800.1_g000008
rosa_roxburghii Rroxscaffold_4G00311020
rosa_rugosa Rorug01G0165400
rosa_samantha Rh1AG180500 Rh1BG148700 Rh1CG167400 Rh1DG180600
rosa_wichuraiana Rw1G015000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 133, 373
AclWI GGATC 1 cut(s) 209
AcoI YGGCCR 1 cut(s) 323
AcsI RAATTY 1 cut(s) 55
AfiI CCNNNNNNNGG 2 cut(s) 46, 139
AgsI TTSAA 2 cut(s) 457, 467
AluBI AGCT 1 cut(s) 437
AluI AGCT 1 cut(s) 437
Alw21I GWGCWC 1 cut(s) 70
Alw26I GTCTC 2 cut(s) 362, 441
AlwI GGATC 1 cut(s) 209
AlwNI CAGNNNCTG 1 cut(s) 366
AoxI GGCC 2 cut(s) 48, 323
ApeKI GCWGC 1 cut(s) 375
ApoI RAATTY 1 cut(s) 55
AspS9I GGNCC 1 cut(s) 496
AvaII GGWCC 1 cut(s) 496
BalI TGGCCA 1 cut(s) 325
BanII GRGCYC 1 cut(s) 26
Bbv12I GWGCWC 1 cut(s) 70
BbvI GCAGC 1 cut(s) 362
BccI CCATC 2 cut(s) 324, 421
BcoDI GTCTC 2 cut(s) 362, 441
BisI GCNGC 1 cut(s) 376
BlsI GCNGC 1 cut(s) 377
Bme18I GGWCC 1 cut(s) 496
BmgT120I GGNCC 1 cut(s) 496
BmrI ACTGGG 1 cut(s) 20
BmuI ACTGGG 1 cut(s) 20
BpmI CTGGAG 1 cut(s) 408
Bpu10I CCTNAGC 2 cut(s) 20, 492
BsaI GGTCTC 1 cut(s) 362
BsaJI CCNNGG 2 cut(s) 77, 379
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 139
Bse1I ACTGG 2 cut(s) 26, 391
BseDI CCNNGG 2 cut(s) 77, 379
BseLI CCNNNNNNNGG 2 cut(s) 46, 139
BseMII CTCAG 4 cut(s) 11, 22, 129, 373
BseNI ACTGG 2 cut(s) 26, 391
BseXI GCAGC 1 cut(s) 362
BsgI GTGCAG 1 cut(s) 217
BshFI GGCC 2 cut(s) 50, 325
BsiHKAI GWGCWC 1 cut(s) 70
BslI CCNNNNNNNGG 2 cut(s) 46, 139
BsmAI GTCTC 2 cut(s) 362, 441
BsnI GGCC 2 cut(s) 50, 325
Bso31I GGTCTC 1 cut(s) 362
Bsp1286I GDGCHC 2 cut(s) 26, 70
Bsp143I GATC 1 cut(s) 214
BspACI CCGC 2 cut(s) 133, 373
BspANI GGCC 2 cut(s) 50, 325
BspCNI CTCAG 4 cut(s) 12, 21, 130, 372
BspHI TCATGA 1 cut(s) 420
BspPI GGATC 1 cut(s) 209
BspQI GCTCTTC 1 cut(s) 75
BspTNI GGTCTC 1 cut(s) 362
BsrI ACTGG 2 cut(s) 26, 391
BssECI CCNNGG 2 cut(s) 77, 379
BssMI GATC 1 cut(s) 214
BssT1I CCWWGG 1 cut(s) 379
Bst4CI ACNGT 1 cut(s) 65
Bst6I CTCTTC 1 cut(s) 75
BstDEI CTNAG 5 cut(s) 8, 20, 138, 359, 492
BstDSI CCRYGG 1 cut(s) 77
BstKTI GATC 1 cut(s) 217
BstMAI GTCTC 2 cut(s) 362, 441
BstMBI GATC 1 cut(s) 214
BstMWI GCNNNNNNNGC 1 cut(s) 375
BstNSI RCATGY 1 cut(s) 301
BstV1I GCAGC 1 cut(s) 362
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BsuRI GGCC 2 cut(s) 50, 325
BtgI CCRYGG 1 cut(s) 77
BtsI GCAGTG 1 cut(s) 486
BtsIMutI CAGTG 2 cut(s) 135, 486
CaiI CAGNNNCTG 1 cut(s) 366
CciI TCATGA 1 cut(s) 420
Cfr13I GGNCC 1 cut(s) 496
CseI GACGC 1 cut(s) 492
CspCI CAANNNNNGTGG 4 cut(s) 273, 308, 325, 360
CviAII CATG 2 cut(s) 298, 421
CviJI RGCY 6 cut(s) 24, 50, 118, 325, 411, 437
CviKI_1 RGCY 6 cut(s) 24, 50, 118, 325, 411, 437
DdeI CTNAG 5 cut(s) 8, 20, 138, 359, 492
DpnI GATC 1 cut(s) 216
DpnII GATC 1 cut(s) 214
EaeI YGGCCR 1 cut(s) 323
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
Eco130I CCWWGG 1 cut(s) 379
Eco24I GRGCYC 1 cut(s) 26
Eco31I GGTCTC 1 cut(s) 362
Eco32I GATATC 1 cut(s) 229
Eco47I GGWCC 1 cut(s) 496
EcoO109I RGGNCCY 1 cut(s) 496
EcoRV GATATC 1 cut(s) 229
EcoT14I CCWWGG 1 cut(s) 379
EcoT38I GRGCYC 1 cut(s) 26
ErhI CCWWGG 1 cut(s) 379
FaeI CATG 2 cut(s) 301, 424
FaiI YATR 8 cut(s) 299, 396, 402, 404, 422, 441, 502, 504
FatI CATG 2 cut(s) 297, 420
FauI CCCGC 1 cut(s) 380
Fnu4HI GCNGC 1 cut(s) 376
FriOI GRGCYC 1 cut(s) 26
Fsp4HI GCNGC 1 cut(s) 376
GluI GCNGC 1 cut(s) 376
GsuI CTGGAG 1 cut(s) 408
HaeIII GGCC 2 cut(s) 50, 325
HgaI GACGC 1 cut(s) 492
Hin1II CATG 2 cut(s) 301, 424
HinfI GANTC 5 cut(s) 12, 82, 102, 179, 431
Hpy166II GTNNAC 1 cut(s) 295
Hpy188I TCNGA 2 cut(s) 11, 41
Hpy188III TCNNGA 3 cut(s) 19, 86, 421
Hpy8I GTNNAC 1 cut(s) 295
Hpy99I CGWCG 2 cut(s) 97, 486
HpyAV CCTTC 3 cut(s) 118, 129, 240
HpyCH4III ACNGT 1 cut(s) 65
HpyCH4V TGCA 3 cut(s) 234, 301, 336
HpyF10VI GCNNNNNNNGC 1 cut(s) 375
HpyF3I CTNAG 5 cut(s) 8, 20, 138, 359, 492
Hsp92II CATG 2 cut(s) 301, 424
Kzo9I GATC 1 cut(s) 214
LguI GCTCTTC 1 cut(s) 75
LmnI GCTCC 1 cut(s) 374
LpnPI CCDG 8 cut(s) 32, 39, 99, 222, 225, 254, 372, 429
Lsp1109I GCAGC 1 cut(s) 362
MaeIII GTNAC 2 cut(s) 28, 362
MalI GATC 1 cut(s) 216
MboI GATC 1 cut(s) 214
MboII GAAGA 2 cut(s) 62, 436
MflI RGATCY 1 cut(s) 214
MhlI GDGCHC 2 cut(s) 26, 70
MlsI TGGCCA 1 cut(s) 325
MluCI AATT 2 cut(s) 55, 451
MluNI TGGCCA 1 cut(s) 325
MlyI GAGTC 2 cut(s) 96, 188
MmeI TCCRAC 1 cut(s) 84
MnlI CCTC 6 cut(s) 40, 43, 133, 160, 228, 273
Mox20I TGGCCA 1 cut(s) 325
MscI TGGCCA 1 cut(s) 325
MslI CAYNNNNRTG 2 cut(s) 302, 425
Msp20I TGGCCA 1 cut(s) 325
MspA1I CMGCKG 1 cut(s) 375
MwoI GCNNNNNNNGC 1 cut(s) 375
NdeII GATC 1 cut(s) 214
NlaIII CATG 2 cut(s) 301, 424
NspI RCATGY 1 cut(s) 301
PagI TCATGA 1 cut(s) 420
PciSI GCTCTTC 1 cut(s) 75
PfeI GAWTC 3 cut(s) 12, 82, 431
PkrI GCNGC 1 cut(s) 377
PleI GAGTC 2 cut(s) 96, 187
PpsI GAGTC 2 cut(s) 96, 187
PpuMI RGGWCCY 1 cut(s) 496
Psp5II RGGWCCY 1 cut(s) 496
PspPI GGNCC 1 cut(s) 496
PspPPI RGGWCCY 1 cut(s) 496
PstNI CAGNNNCTG 1 cut(s) 366
PsuI RGATCY 1 cut(s) 214
RseI CAYNNNNRTG 2 cut(s) 302, 425
SapI GCTCTTC 1 cut(s) 75
SatI GCNGC 1 cut(s) 376
Sau3AI GATC 1 cut(s) 214
Sau96I GGNCC 1 cut(s) 496
SchI GAGTC 2 cut(s) 96, 188
SduI GDGCHC 2 cut(s) 26, 70
SetI ASST 5 cut(s) 35, 171, 401, 439, 501
SinI GGWCC 1 cut(s) 496
SmiMI CAYNNNNRTG 2 cut(s) 302, 425
Sse9I AATT 2 cut(s) 55, 451
SsiI CCGC 2 cut(s) 133, 373
StyI CCWWGG 1 cut(s) 379
TaaI ACNGT 1 cut(s) 65
TaqI TCGA 1 cut(s) 174
TasI AATT 2 cut(s) 55, 451
TfiI GAWTC 3 cut(s) 12, 82, 431
TscAI CASTG 2 cut(s) 142, 493
TseI GCWGC 1 cut(s) 375
TspDTI ATGAA 3 cut(s) 404, 409, 437
TspGWI ACGGA 2 cut(s) 25, 94
TspRI CASTG 2 cut(s) 142, 493
VpaK11BI GGWCC 1 cut(s) 496
XapI RAATTY 1 cut(s) 55
XceI RCATGY 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.