AT3G18220

Lipid phosphate phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0007000
Physical Location & Seq
Forward (+)
6247900 .. 6250007
2108 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G18220.1

Sequence Viewer

Length: 927 bp
ATGGCTAAGATAATGCTTGGATCTCACTCGGTTAAGAGCCATGGATGGAAGGTGGCTCGTGAACATCTTTGTGACTGGCTCATCCTCGTAGTCCTCGGTCTCATCGACATTGTACTCAATGTTATCGAGCCTTTTCATCGCTATATTGGACCTGACATGTTAACCGATCTCACTTTCCCATTTTATGAAGACACCATCCCTATGTGGGCTGTCCCGATTATTTGTATATTGGTTCCGATATGCATCTTCATAGTGTACTATTACTATCGAAGAGATGTTTATGATCTTCATCACGCCATTCTCGGTATCGGATTCTCATGTCTTGTGACTGGAGTCACCACTGATTCCATCAAAGACGCGGTCGGTAGGCCACGCCCTAACTTCTTTTACCGATGTTTTCCCAATGGTAAACCGAAATTTCATCCGGATACTAAGGATGTTGTGTGTCATGGAGTTAAAAAGATAATCAAAGAAGGTTACAAGAGTTTCCCTAGTGGTCACACTTCATGGTCATTCGCTGGTTTAACTTTCCTAGCGTGGTACTTATCGGGTAAAATCAAAGTCTTTGACAGAAGAGGTCACGTGGCGAAGCTATGCCTCGTGTTCTTACCGATACTCATATCAATTCTCATCGGAATATCACGCGTAGACGACTATTGGCACCATTGGACCGATGTCTTCGCCGGAGCTATCATCGGAATTTTTGTCGCTTCTTTCTCTTACCTCCACTTTTTTCCTTACCCTTACGACGAAAACGGATGGGCTCCACATGCGTATTTTAGAATGTTGGCGGAGAGGAGCACTGGTCGAGCCACGACGATGACTCGAACCGGTTCTCGAGGAATGTTGGGCAACGACGTTGAGCCTGGCAACTCCGCGTCCTCGCCGCACGATCGCCACCGTGAAAGCACTGATTCTGACTTTTGA

Protein Analysis

308

Amino Acids

35.1

Weight (kDa)

8.4

Isoelectric Point (pI)

29.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP2 PF01569 101 - 242 5.3e-29 PAP2 superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 660
AccI GTMKAC 1 cut(s) 648
AccII CGCG 3 cut(s) 359, 645, 878
AccIII TCCGGA 1 cut(s) 424
AciI CCGC 4 cut(s) 359, 791, 876, 887
AclWI GGATC 1 cut(s) 28
AcsI RAATTY 2 cut(s) 416, 699
AcvI CACGTG 1 cut(s) 583
AfaI GTAC 3 cut(s) 114, 257, 542
AfiI CCNNNNNNNGG 1 cut(s) 205
AflIII ACRYGT 2 cut(s) 156, 643
AgeI ACCGGT 1 cut(s) 830
AjnI CCWGG 1 cut(s) 865
AluBI AGCT 2 cut(s) 592, 689
AluI AGCT 2 cut(s) 592, 689
Alw21I GWGCWC 1 cut(s) 803
Alw26I GTCTC 1 cut(s) 104
AlwI GGATC 1 cut(s) 28
Ama87I CYCGRG 1 cut(s) 837
Aor13HI TCCGGA 1 cut(s) 424
AoxI GGCC 1 cut(s) 368
ApoI RAATTY 2 cut(s) 416, 699
ArsI GACNNNNNNTTYG 2 cut(s) 345, 377
AsiGI ACCGGT 1 cut(s) 830
Asp700I GAANNNNTTC 1 cut(s) 832
AspS9I GGNCC 2 cut(s) 149, 669
AsuHPI GGTGA 1 cut(s) 328
AvaI CYCGRG 1 cut(s) 837
AvaII GGWCC 2 cut(s) 149, 669
BanI GGYRCC 1 cut(s) 660
BanII GRGCYC 1 cut(s) 766
BauI CACGAG 2 cut(s) 57, 599
BbrPI CACGTG 1 cut(s) 583
BbsI GAAGAC 2 cut(s) 195, 670
Bbv12I GWGCWC 1 cut(s) 803
BccI CCATC 4 cut(s) 39, 203, 356, 753
BciT130I CCWGG 1 cut(s) 867
BciVI GTATCC 1 cut(s) 421
BcoDI GTCTC 1 cut(s) 104
BfaI CTAG 2 cut(s) 492, 533
BfuI GTATCC 1 cut(s) 421
BisI GCNGC 1 cut(s) 887
BlsI GCNGC 1 cut(s) 888
Bme1390I CCNGG 1 cut(s) 867
Bme18I GGWCC 2 cut(s) 149, 669
BmeT110I CYCGRG 1 cut(s) 837
BmgT120I GGNCC 2 cut(s) 149, 669
BmiI GGNNCC 3 cut(s) 234, 662, 765
BmrFI CCNGG 1 cut(s) 867
BmsI GCATC 1 cut(s) 252
BoxI GACNNNNGTC 2 cut(s) 332, 674
BpiI GAAGAC 2 cut(s) 195, 670
BpmI CTGGAG 1 cut(s) 351
BsaAI YACGTR 1 cut(s) 583
BsaBI GATNNNNATC 2 cut(s) 242, 288
BsaI GGTCTC 1 cut(s) 104
BsaJI CCNNGG 2 cut(s) 40, 94
BsaWI WCCGGW 2 cut(s) 424, 830
BsaXI ACNNNNNCTCC 2 cut(s) 790, 820
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse118I RCCGGY 1 cut(s) 830
Bse1I ACTGG 3 cut(s) 80, 334, 808
Bse8I GATNNNNATC 2 cut(s) 242, 288
BseAI TCCGGA 1 cut(s) 424
BseBI CCWGG 1 cut(s) 867
BseDI CCNNGG 2 cut(s) 40, 94
BseGI GGATG 6 cut(s) 50, 81, 195, 421, 442, 764
BseJI GATNNNNATC 2 cut(s) 242, 288
BseLI CCNNNNNNNGG 1 cut(s) 205
BseNI ACTGG 3 cut(s) 80, 334, 808
BseRI GAGGAG 1 cut(s) 811
Bsh1236I CGCG 3 cut(s) 359, 645, 878
Bsh1285I CGRYCG 2 cut(s) 363, 895
BshFI GGCC 1 cut(s) 370
BshNI GGYRCC 1 cut(s) 660
BshTI ACCGGT 1 cut(s) 830
BsiEI CGRYCG 2 cut(s) 363, 895
BsiHKAI GWGCWC 1 cut(s) 803
BsiHKCI CYCGRG 1 cut(s) 837
BsiSI CCGG 3 cut(s) 425, 684, 831
BslFI GGGAC 1 cut(s) 197
BslI CCNNNNNNNGG 1 cut(s) 205
BsmAI GTCTC 1 cut(s) 104
BsmFI GGGAC 1 cut(s) 197
BsnI GGCC 1 cut(s) 370
Bso31I GGTCTC 1 cut(s) 104
BsoBI CYCGRG 1 cut(s) 837
Bsp1286I GDGCHC 2 cut(s) 766, 803
Bsp13I TCCGGA 1 cut(s) 424
Bsp143I GATC 4 cut(s) 20, 166, 283, 892
Bsp19I CCATGG 1 cut(s) 40
BspACI CCGC 4 cut(s) 359, 791, 876, 887
BspANI GGCC 1 cut(s) 370
BspEI TCCGGA 1 cut(s) 424
BspFNI CGCG 3 cut(s) 359, 645, 878
BspLI GGNNCC 3 cut(s) 234, 662, 765
BspPI GGATC 1 cut(s) 28
BspT107I GGYRCC 1 cut(s) 660
BspTNI GGTCTC 1 cut(s) 104
BsrFI RCCGGY 1 cut(s) 830
BsrI ACTGG 3 cut(s) 80, 334, 808
BssAI RCCGGY 1 cut(s) 830
BssECI CCNNGG 2 cut(s) 40, 94
BssMI GATC 4 cut(s) 20, 166, 283, 892
BssSI CACGAG 2 cut(s) 57, 599
BssT1I CCWWGG 1 cut(s) 40
Bst2BI CACGAG 2 cut(s) 57, 599
Bst2UI CCWGG 1 cut(s) 867
Bst4CI ACNGT 1 cut(s) 902
Bst6I CTCTTC 2 cut(s) 265, 568
BstBAI YACGTR 1 cut(s) 583
BstDEI CTNAG 2 cut(s) 6, 432
BstDSI CCRYGG 1 cut(s) 40
BstF5I GGATG 6 cut(s) 50, 81, 195, 421, 442, 764
BstFNI CGCG 3 cut(s) 359, 645, 878
BstKTI GATC 4 cut(s) 23, 169, 286, 895
BstMAI GTCTC 1 cut(s) 104
BstMBI GATC 4 cut(s) 20, 166, 283, 892
BstMCI CGRYCG 2 cut(s) 363, 895
BstMWI GCNNNNNNNGC 1 cut(s) 770
BstNI CCWGG 1 cut(s) 867
BstNSI RCATGY 2 cut(s) 160, 773
BstPAI GACNNNNGTC 2 cut(s) 332, 674
BstSCI CCNGG 1 cut(s) 865
BstUI CGCG 3 cut(s) 359, 645, 878
BstV2I GAAGAC 2 cut(s) 195, 670
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
BsuI GTATCC 1 cut(s) 421
BsuRI GGCC 1 cut(s) 370
BtgI CCRYGG 1 cut(s) 40
BtgZI GCGATG 1 cut(s) 122
BtsCI GGATG 6 cut(s) 50, 81, 195, 421, 442, 764
BtsIMutI CAGTG 3 cut(s) 339, 801, 909
Cfr10I RCCGGY 1 cut(s) 830
Cfr13I GGNCC 2 cut(s) 149, 669
CseI GACGC 2 cut(s) 365, 867
Csp6I GTAC 3 cut(s) 113, 256, 541
CspAI ACCGGT 1 cut(s) 830
CviAII CATG 6 cut(s) 41, 157, 318, 449, 507, 770
CviQI GTAC 3 cut(s) 113, 256, 541
DdeI CTNAG 2 cut(s) 6, 432
DpnI GATC 4 cut(s) 22, 168, 285, 894
DpnII GATC 4 cut(s) 20, 166, 283, 892
Eam1104I CTCTTC 2 cut(s) 265, 568
EarI CTCTTC 2 cut(s) 265, 568
EciI GGCGGA 1 cut(s) 806
Eco130I CCWWGG 1 cut(s) 40
Eco24I GRGCYC 1 cut(s) 766
Eco31I GGTCTC 1 cut(s) 104
Eco47I GGWCC 2 cut(s) 149, 669
Eco72I CACGTG 1 cut(s) 583
Eco88I CYCGRG 1 cut(s) 837
EcoRII CCWGG 1 cut(s) 865
EcoT14I CCWWGG 1 cut(s) 40
EcoT22I ATGCAT 1 cut(s) 245
EcoT38I GRGCYC 1 cut(s) 766
ErhI CCWWGG 1 cut(s) 40
FaeI CATG 6 cut(s) 44, 160, 321, 452, 510, 773
FaqI GGGAC 1 cut(s) 197
FatI CATG 6 cut(s) 40, 156, 317, 448, 506, 769
FblI GTMKAC 1 cut(s) 648
Fnu4HI GCNGC 1 cut(s) 887
FokI GGATG 6 cut(s) 57, 68, 182, 408, 449, 771
FriOI GRGCYC 1 cut(s) 766
Fsp4HI GCNGC 1 cut(s) 887
FspBI CTAG 2 cut(s) 492, 533
GluI GCNGC 1 cut(s) 887
GsuI CTGGAG 1 cut(s) 351
HaeIII GGCC 1 cut(s) 370
HapII CCGG 3 cut(s) 425, 684, 831
HgaI GACGC 2 cut(s) 365, 867
Hin1II CATG 6 cut(s) 44, 160, 321, 452, 510, 773
HincII GTYRAC 1 cut(s) 162
HindII GTYRAC 1 cut(s) 162
HinfI GANTC 5 cut(s) 312, 333, 344, 823, 914
HpaI GTTAAC 1 cut(s) 162
HpaII CCGG 3 cut(s) 425, 684, 831
HphI GGTGA 1 cut(s) 328
Hpy166II GTNNAC 5 cut(s) 62, 162, 256, 410, 649
Hpy188I TCNGA 5 cut(s) 237, 311, 635, 698, 919
Hpy188III TCNNGA 4 cut(s) 59, 214, 425, 837
Hpy8I GTNNAC 5 cut(s) 62, 162, 256, 410, 649
Hpy99I CGWCG 3 cut(s) 752, 820, 860
HpyAV CCTTC 2 cut(s) 43, 467
HpyCH4III ACNGT 1 cut(s) 902
HpyCH4IV ACGT 2 cut(s) 582, 858
HpyCH4V TGCA 1 cut(s) 243
HpyF10VI GCNNNNNNNGC 1 cut(s) 770
HpyF3I CTNAG 2 cut(s) 6, 432
HpySE526I ACGT 2 cut(s) 582, 858
Hsp92II CATG 6 cut(s) 44, 160, 321, 452, 510, 773
Kpn2I TCCGGA 1 cut(s) 424
KspAI GTTAAC 1 cut(s) 162
Kzo9I GATC 4 cut(s) 20, 166, 283, 892
LmnI GCTCC 3 cut(s) 686, 769, 798
LweI GCATC 1 cut(s) 252
MaeI CTAG 2 cut(s) 492, 533
MaeII ACGT 2 cut(s) 582, 858
MaeIII GTNAC 6 cut(s) 71, 325, 334, 476, 497, 578
MalI GATC 4 cut(s) 22, 168, 285, 894
MboI GATC 4 cut(s) 20, 166, 283, 892
MboII GAAGA 6 cut(s) 200, 238, 278, 282, 585, 670
MflI RGATCY 1 cut(s) 20
MhlI GDGCHC 2 cut(s) 766, 803
MluCI AATT 3 cut(s) 416, 624, 699
MluI ACGCGT 1 cut(s) 643
MlyI GAGTC 2 cut(s) 342, 817
MnlI CCTC 8 cut(s) 95, 104, 569, 608, 734, 789, 833, 892
Mph1103I ATGCAT 1 cut(s) 245
MroI TCCGGA 1 cut(s) 424
MroXI GAANNNNTTC 1 cut(s) 832
MseI TTAA 4 cut(s) 33, 161, 456, 524
MslI CAYNNNNRTG 3 cut(s) 69, 200, 818
MspI CCGG 3 cut(s) 425, 684, 831
MspR9I CCNGG 1 cut(s) 867
MvaI CCWGG 1 cut(s) 867
MvnI CGCG 3 cut(s) 359, 645, 878
MwoI GCNNNNNNNGC 1 cut(s) 770
NcoI CCATGG 1 cut(s) 40
NdeII GATC 4 cut(s) 20, 166, 283, 892
NlaIII CATG 6 cut(s) 44, 160, 321, 452, 510, 773
NlaIV GGNNCC 3 cut(s) 234, 662, 765
NmuCI GTSAC 5 cut(s) 71, 325, 334, 497, 578
NsiI ATGCAT 1 cut(s) 245
NspI RCATGY 2 cut(s) 160, 773
PaeR7I CTCGAG 1 cut(s) 837
PciI ACATGT 1 cut(s) 156
PcsI WCGNNNNNNNCGW 1 cut(s) 102
PdmI GAANNNNTTC 1 cut(s) 832
PfeI GAWTC 3 cut(s) 312, 344, 914
PflFI GACNNNGTC 1 cut(s) 359
PinAI ACCGGT 1 cut(s) 830
PkrI GCNGC 1 cut(s) 888
Ple19I CGATCG 1 cut(s) 895
PleI GAGTC 2 cut(s) 341, 817
PmaCI CACGTG 1 cut(s) 583
PmlI CACGTG 1 cut(s) 583
PpsI GAGTC 2 cut(s) 341, 817
Ppu21I YACGTR 1 cut(s) 583
PscI ACATGT 1 cut(s) 156
PshAI GACNNNNGTC 2 cut(s) 332, 674
Psp6I CCWGG 1 cut(s) 865
PspCI CACGTG 1 cut(s) 583
PspGI CCWGG 1 cut(s) 865
PspN4I GGNNCC 3 cut(s) 234, 662, 765
PspPI GGNCC 2 cut(s) 149, 669
PsuI RGATCY 1 cut(s) 20
PsyI GACNNNGTC 1 cut(s) 359
PvuI CGATCG 1 cut(s) 895
RsaI GTAC 3 cut(s) 114, 257, 542
RsaNI GTAC 3 cut(s) 113, 256, 541
RseI CAYNNNNRTG 3 cut(s) 69, 200, 818
SaqAI TTAA 4 cut(s) 33, 161, 456, 524
SatI GCNGC 1 cut(s) 887
Sau3AI GATC 4 cut(s) 20, 166, 283, 892
Sau96I GGNCC 2 cut(s) 149, 669
SchI GAGTC 2 cut(s) 342, 817
ScrFI CCNGG 1 cut(s) 867
SduI GDGCHC 2 cut(s) 766, 803
SetI ASST 9 cut(s) 54, 154, 478, 580, 585, 594, 691, 726, 861
SfaNI GCATC 1 cut(s) 252
Sfr274I CTCGAG 1 cut(s) 837
SinI GGWCC 2 cut(s) 149, 669
SlaI CTCGAG 1 cut(s) 837
SmiMI CAYNNNNRTG 3 cut(s) 69, 200, 818
SmlI CTYRAG 1 cut(s) 837
SmoI CTYRAG 1 cut(s) 837
Sse9I AATT 3 cut(s) 416, 624, 699
SsiI CCGC 4 cut(s) 359, 791, 876, 887
SspMI CTAG 2 cut(s) 492, 533
StyD4I CCNGG 1 cut(s) 865
StyI CCWWGG 1 cut(s) 40
TaaI ACNGT 1 cut(s) 902
TaiI ACGT 2 cut(s) 585, 861
TaqI TCGA 6 cut(s) 105, 126, 268, 808, 826, 838
TaqII GACCGA 2 cut(s) 86, 686
TasI AATT 3 cut(s) 416, 624, 699
TatI WGTACW 2 cut(s) 112, 255
TauI GCSGC 1 cut(s) 889
TfiI GAWTC 3 cut(s) 312, 344, 914
Tru1I TTAA 4 cut(s) 33, 161, 456, 524
Tru9I TTAA 4 cut(s) 33, 161, 456, 524
TscAI CASTG 3 cut(s) 346, 808, 916
TseFI GTSAC 5 cut(s) 71, 325, 334, 497, 578
Tsp45I GTSAC 5 cut(s) 71, 325, 334, 497, 578
TspDTI ATGAA 6 cut(s) 125, 201, 238, 278, 410, 495
TspGWI ACGGA 1 cut(s) 771
TspRI CASTG 3 cut(s) 346, 808, 916
Tth111I GACNNNGTC 1 cut(s) 359
VpaK11BI GGWCC 2 cut(s) 149, 669
XapI RAATTY 2 cut(s) 416, 699
XceI RCATGY 2 cut(s) 160, 773
XhoI CTCGAG 1 cut(s) 837
XmiI GTMKAC 1 cut(s) 648
XmnI GAANNNNTTC 1 cut(s) 832
XspI CTAG 2 cut(s) 492, 533
Zsp2I ATGCAT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.